Search results for "thaliana"

showing 10 items of 136 documents

p24 Family Proteins Are Involved in Transport to the Plasma Membrane of GPI-Anchored Proteins in Plants

2020

p24 proteins are a family of type-I membrane proteins that cycle between the endoplasmic reticulum (ER) and the Golgi apparatus via Coat Protein I (COPI)- and COPII-coated vesicles. These proteins have been proposed to function as cargo receptors, but the identity of putative cargos in plants is still elusive. We previously generated an Arabidopsis (Arabidopsis thaliana) quadruple loss-of-function mutant affecting p24 genes from the δ-1 subclass of the p24 delta subfamily (p24δ3δ4δ5δ6 mutant). This mutant also had reduced protein levels of other p24 family proteins and was found to be sensitive to salt stress. Here, we used this mutant to test the possible involvement of p24 proteins in the…

0106 biological sciencesGenotypePhysiologyGlycosylphosphatidylinositolsMutantArabidopsisGolgi ApparatusPlant ScienceEndoplasmic Reticulum01 natural sciencessymbols.namesakeArabidopsisGeneticsArabidopsis thalianaResearch ArticlesbiologyChemistryArabidopsis ProteinsVesicleEndoplasmic reticulumCell MembraneGenetic VariationMembrane ProteinsCOPIGolgi apparatusbiology.organism_classificationCell biologyProtein TransportMembrane proteinMutationsymbols010606 plant biology & botany
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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DNA polymorphism at the FRIGIDA gene in Arabidopsis thaliana : extensive nonsynonymous variation is consistent with local selection for flowering time

2002

FRIGIDA (FRI) is a major gene involved in the regulation of flowering time in Arabidopsis thaliana. Nucleotide variation at this gene was investigated by sequencing 25 field ecotypes collected from western Europe. Genetic diversity at FRI was characterized by a high number of haplotypes and an excess of low-frequency polymorphisms. A large excess of intraspecific nonsynonymous variation associated with low synonymous variation was detected along the first exon in the FRI gene. In contrast, no excess of nonsynonymous divergence was detected between A. thaliana and A. lyrata. The Tajima and McDonald and Kreitman tests, however, suggested that this gene has evolved in a nonneutral fashion. Non…

0106 biological sciencesNonsynonymous substitutionArabidopsisFlowers01 natural sciences03 medical and health sciencesExonGenetics[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyArabidopsis thaliana[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMolecular BiologyGeneEcology Evolution Behavior and SystematicsPhylogenyComputingMilieux_MISCELLANEOUS030304 developmental biologyGeneticsRecombination Genetic0303 health sciencesGenetic diversityPolymorphism GeneticbiologyEcotypeArabidopsis ProteinsHaplotypeGenetic VariationSequence Analysis DNAbiology.organism_classificationMajor genePhenotype010606 plant biology & botany
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NO contributes to cadmium toxicity in Arabidopsis thaliana by mediating an iron deprivation response

2009

Nitric oxide (NO) functions as a cell-signaling molecule in plants. In particular, a role for NO in the regulation of iron homeostasis and in the plant response to toxic metals has been proposed. Here, we investigated the synthesis and the role of NO in plants exposed to cadmium (Cd(2+)), a nonessential and toxic metal. We demonstrate that Cd(2+) induces NO synthesis in roots and leaves of Arabidopsis (Arabidopsis thaliana) seedlings. This production, which is sensitive to NO synthase inhibitors, does not involve nitrate reductase and AtNOA1 but requires IRT1, encoding a major plasma membrane transporter for iron but also Cd(2+). By analyzing the incidence of NO scavenging or inhibition of …

0106 biological sciencesPRIVATION DE FERIronOXYDE NITRIQUE (NO)Arabidopsischemistry.chemical_elementPlant ScienceOxidative phosphorylationBiologyBioinformaticsGenes PlantNitric Oxide01 natural sciencesModels BiologicalPlant RootsNitric oxide[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health scienceschemistry.chemical_compoundGene Expression Regulation PlantArabidopsis thalianaGene030304 developmental biology0303 health sciencesCadmiumARABIDOPSIS THALIANATransporterEndogenous mediatorbiology.organism_classificationCell biologyArticle AddendumUp-RegulationPlant LeavesNG-Nitroarginine Methyl EsterchemistryIron acquisitionResearch Article010606 plant biology & botanyCadmium
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Arabidopsis plants deficient in plastidial glyceraldehyde-3-phosphate dehydrogenase show alterations in abscisic acid (ABA) signal transduction: inte…

2010

Abscisic acid (ABA) controls plant development and regulates plant responses to environmental stresses. A role for ABA in sugar regulation of plant development has also been well documented although the molecular mechanisms connecting the hormone with sugar signal transduction pathways are not well understood. In this work it is shown that Arabidopsis thaliana mutants deficient in plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase (gapcp1gapcp2) are ABA insensitive in growth, stomatal closure, and germination assays. The ABA levels of gapcp1gapcp2 were normal, suggesting that the ABA signal transduction pathway is impaired in the mutants. ABA modified gapcp1gapcp2 gene expressio…

0106 biological sciencesPhysiologyArabidopsisPlant Science01 natural sciencesSerine03 medical and health scienceschemistry.chemical_compoundAmino acid homeostasisPlant Growth RegulatorsGene Expression Regulation PlantArabidopsisArabidopsis thalianaPlastidsAbscisic acidGlyceraldehyde 3-phosphate dehydrogenase030304 developmental biologyglyceraldehyde-3-phosphate dehydrogenase0303 health sciencesbiologyArabidopsis Proteinsorganic chemicalsfungiGlyceraldehyde-3-Phosphate Dehydrogenasesfood and beveragessugar signallingglycolysisbiology.organism_classificationResearch Papers3. Good healthGAPCpchemistryBiochemistryABAABA signal transductionbiology.proteinCarbohydrate MetabolismSignal transductionSugar signal transduction010606 plant biology & botanyAbscisic AcidSignal Transduction
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Xyloglucan endotransglucosylase/hydrolase (XTH) overexpression affects growth and cell wall mechanics in etiolated Arabidopsis hypocotyls.

2013

Abstract: Growth and biomechanics of etiolated hypocotyls from Arabidopsis thaliana lines overexpressing xyloglucan endotransglucosylase/hydrolase AtXTH18, AtXTH19, AtXTH20, and PttXET16-34 were studied. Overexpression of AtXTH18, AtXTH19, and AtXTH20 stimulated growth of hypocotyls, while PttXET16-34 overexpression did not show this effect. In vitro extension of frozen/thawed hypocotyls measured by a constant-load extensiometer started from a high-amplitude initial deformation followed by a slow time-dependent creep. Creep of growing XTH-overexpressing (OE) hypocotyls was more linear in time compared with the wild type at pH 5.0, reflecting their higher potential for long-term extension. X…

0106 biological sciencesPhysiologyArabidopsisPlant ScienceBiologyReal-Time Polymerase Chain Reaction01 natural sciencesHypocotylCell wall03 medical and health sciencesCell WallGene Expression Regulation PlantTensile StrengthArabidopsisArabidopsis thalianaXyloglucan:xyloglucosyl transferaseBiology030304 developmental biology0303 health sciencesAgriculturafungiWild typeGlycosyltransferasesfood and beveragesXyloglucan endotransglucosylasebiology.organism_classificationHypocotylBiochemistryEtiolationBiophysics010606 plant biology & botany
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The grapevine flagellin receptor VvFLS2 differentially recognizes flagellin-derived epitopes from the endophytic growth-promoting bacterium Burkholde…

2014

International audience; The role of flagellin perception in the context of plant beneficial bacteria still remains unclear. Here, we characterized the flagellin sensing system flg22-FLAGELLIN SENSING 2 (FLS2) in grapevine, and analyzed the flagellin perception in the interaction with the endophytic plant growth-promoting rhizobacterium (PGPR) Burkholderia phytofirmans. The functionality of the grapevine FLS2 receptor, VvFLS2, was demonstrated by complementation assays in the Arabidopsis thaliana fls2 mutant, which restored flg22-induced H2O2 production and growth inhibition. Using synthetic flg22 peptides from different bacterial origins, we compared recognition specificities between VvFLS2…

0106 biological sciencesPhysiologyBurkholderia phytofirmans[SDV]Life Sciences [q-bio]flg22ArabidopsisColony Count MicrobialPlant Sciencemedicine.disease_cause01 natural sciencesEpitopesArabidopsisEndophytesArabidopsis thalianaPlant ImmunityVitisDisease ResistancePlant Proteins0303 health sciencesbiologyBurkholderia phytofirmansmicrobe-associated molecular pattern (MAMP)Xanthomonas campestrisPGPR[SDE]Environmental SciencesBotrytispattern recognition receptor (PRR)BurkholderiaMolecular Sequence DataContext (language use)Receptors Cell SurfaceMicrobiology03 medical and health sciencesSpecies Specificitymedicine[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyComputer SimulationAmino Acid Sequenceflagellin sensing030304 developmental biologyPlant DiseasesfungiCell MembraneGenetic Complementation TestPathogenic bacteriabiology.organism_classificationVitis viniferaMutationbiology.proteinReactive Oxygen SpeciesFlagellinBacteria010606 plant biology & botanyFlagellinThe New phytologistReferences
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Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Deficiency Leads to Altered Root Development and Affects the Sugar and Amino Acid Balance in Arab…

2009

[EN] Glycolysis is a central metabolic pathway that, in plants, occurs in both the cytosol and the plastids. The glycolytic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) catalyzes the conversion of glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate with concomitant reduction of NAD(+) to NADH. Both cytosolic (GAPCs) and plastidial (GAPCps) GAPDH activities have been described. However, the in vivo functions of the plastidial isoforms remain unresolved. In this work, we have identified two Arabidopsis (Arabidopsis thaliana) chloroplast/plastid-localized GAPDH isoforms (GAPCp1 and GAPCp2). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism, and steri…

0106 biological sciencesPhysiologyDehydrogenaseSerine biosynthesisPlant Science01 natural sciencesSerine03 medical and health scienceschemistry.chemical_compoundBiosynthesisArabidopsisThalianaBIOQUIMICA Y BIOLOGIA MOLECULARGeneticsArabidopsis thalianaGene-expressionGlyceraldehyde 3-phosphate dehydrogenase030304 developmental biology2. Zero hunger0303 health sciencesCrucial rolebiologybiology.organism_classificationIn-source leavesMolecular characterizationMetabolic pathwayMetabolismBiochemistrychemistryOxidative stressbiology.proteinNAD+ kinaseEscherichia-ColiPathway010606 plant biology & botanyPlant Physiology
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Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking.

2021

Abstract The phytohormone auxin and its directional transport through tissues are intensively studied. However, a mechanistic understanding of auxin-mediated feedback on endocytosis and polar distribution of PIN auxin transporters remains limited due to contradictory observations and interpretations. Here, we used state-of-the-art methods to reexamine the auxin effects on PIN endocytic trafficking. We used high auxin concentrations or longer treatments versus lower concentrations and shorter treatments of natural indole-3-acetic acid (IAA) and synthetic naphthalene acetic acid (NAA) auxins to distinguish between specific and nonspecific effects. Longer treatments of both auxins interfere wi…

0106 biological sciencesPhysiologyEndocytic cycleArabidopsisBREFELDIN-APlant Science01 natural sciencesPROTEIN TRAFFICKINGNaphthaleneacetic AcidsPlant Growth RegulatorsGOLGI-APPARATUSheterocyclic compoundsInternalizationResearch Articlesmedia_commonchemistry.chemical_classification0303 health sciencesAcademicSubjects/SCI01270biologyAcademicSubjects/SCI02288AcademicSubjects/SCI02287AcademicSubjects/SCI02286food and beveragesCorrigendaEndocytosisCell biologyProtein TransportMEMBRANE TRAFFICKINGIntracellulartrans-Golgi NetworkGNOM ARF-GEFAcademicSubjects/SCI01280media_common.quotation_subjectEndocytosisClathrin03 medical and health sciencesAuxinGeneticsEndomembrane systemVACUOLAR TRAFFICKINGPLANT030304 developmental biologyIndoleacetic AcidsArabidopsis ProteinsMEDIATES ENDOCYTOSISCell MembraneBiology and Life SciencesTransporterTRANSPORTchemistrybiology.proteinARABIDOPSIS-THALIANA010606 plant biology & botanyPlant physiology
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Glutathione deficiency of the Arabidopsis mutant pad2-1 affects oxidative stress-related events, defense gene expression and hypersensitive response

2011

L'article original est publié par The American Society of Plant Biologists; International audience; The Arabidopsis (Arabidopsis thaliana) phytoalexin-deficient mutant pad2-1 displays enhanced susceptibility to a broad range of pathogens and herbivorous insects that correlates with deficiencies in the production of camalexin, indole glucosinolates, and salicylic acid (SA). The pad2-1 mutation is localized in the GLUTAMATE-CYSTEINE LIGASE (GCL) gene encoding the first enzyme of glutathione biosynthesis. While pad2-1 glutathione deficiency is not caused by a decrease in GCL transcripts, analysis of GCL protein level revealed that pad2-1 plants contained only 48% of the wild-type protein amoun…

0106 biological sciencesPhysiologyMutantGlutathione reductaseArabidopsisOligosaccharidesPlant Science01 natural scienceschemistry.chemical_compoundAnti-Infective AgentsGene Expression Regulation PlantCamalexinArabidopsis thaliana0303 health sciencesGlutathioneBiochemistryHost-Pathogen InteractionsDisease SusceptibilitySalicylic AcidOxidation-ReductionSignal TransductionHypersensitive responsePhytophthoradisease resistanceBiologyNitric Oxiderespiratory burst oxidase homolog d[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health sciencesStress PhysiologicalGeneticsPlants Interacting with Other Organismsglutathione reductase030304 developmental biologyPlant DiseasesArabidopsis ProteinsCell MembraneWild typeGlutathioneHydrogen Peroxidebiology.organism_classificationMolecular biologyPlant LeavesOxidative StresschemistryMutationglutathione-s-transferaseIsochorismate synthasebiology.proteinglutamate-cysteine ligaseReactive Oxygen Species010606 plant biology & botany
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