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Bioconversion of amino acids into flavouring alcohols and esters by Erwinia carotovora subsp. atroseptica
1991
International audience; Erwinia carotovora subsp. atroseptica produced flavour compounds when infecting endives (Cichorium intybus). These compounds were identified as esters and branched-chain alcohols.They were produced from amino acids and some of them such as methionol, methionol acetate, isobutanol, isobutyl acetate, beta-phenyl ethanol and tryptophol were produced with good yields.
Do the ecological drivers of lake littoral communities match and lead to congruence between organism groups?
2020
AbstractLake littoral environments are heterogeneous, and different organisms typically show specific responses to this environmental variation. We examined local environmental and spatial factors affecting lake littoral biodiversity and the structuring of assemblages of phytoplankton, zooplankton and macroinvertebrates within and among three basins of a large lake system. We explored congruence of species composition and species richness among the studied organism groups to evaluate their general indicator potential to represent spatial variation in other groups. We expected that effects of water chemistry on plankton assemblages were stronger than effects of habitat characteristics. In co…
Factors controlling plankton community production, export flux, and particulate matter stoichiometry in the coastal upwelling system off Peru
2020
Eastern boundary upwelling systems (EBUS) are among the most productive marine ecosystems on Earth. The production of organic material is fueled by upwelling of nutrient-rich deep waters and high incident light at the sea surface. However, biotic and abiotic factors can modify surface production and related biogeochemical processes. Determining these factors is important because EBUS are considered hotspots of climate change, and reliable predictions of their future functioning requires understanding of the mechanisms driving the biogeochemical cycles therein. In this field experiment, we used in situ mesocosms as tools to improve our mechanistic understanding of processes controlling organ…
Plankton Tracker: A novel integrated system to investigate the dynamic sinking behavior in phytoplankton
2020
Abstract Phytoplankton sinking is an important property that can determine community composition, affecting nutrient and light absorption in the photic zone, and influencing biogeochemical cycling via material loss to the deep ocean. To date, the difficulty in exploring the sinking processes is partly due to methodological limitations in measuring phytoplankton sinking rate. However, in the last decade, works have illustrated various methods based on some non-invasive and low perturbing approaches (laser scanner, video-microscopy, fluorescence spectroscopy). In this study, we review the methods for sinking rate estimation and describe the Plankton Tracker, a novel integrated system to inves…
Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates
2012
Marine N<sub>2</sub> fixing microorganisms, termed diazotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N<sub>2</sub>) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic …
Benthic mats offer a potential subsidy to pelagic consumers in tundra pond food webs
2014
We quantified the potential nutritional contribution of benthic mats to pelagic consumers in tundra ponds using three approaches. (1) We compared benthic and pelagic habitats based on their algal biomass and community composition and assessed the dietary quality in terms of fatty acid (FA) concentrations in both habitats. The algal community compositions differed significantly between habitats. Both benthic and pelagic habitats contained saturated and unsaturated FAs, but on average there were more FAs relative to carbon in the pelagic habitat (44 6 29 m gm g C21) than the benthic habitat (23 6 18 m gm g C21) across all studied ponds. (2) We quantified the contribution of benthic mats to th…
Assessing the effect of emergent vegetation in a surface-flow constructed wetland on eutrophication reversion and biodiversity enhancement
2018
Abstract A free water-surface constructed wetland (F4-unit) was created in a Mediterranean protected site to treat eutrophic inflows to the Albufera de Valencia lagoon, and enhance biodiversity. In 2013, the F4-unit was divided into three subunits and planted with different compositions of emergent macrophytes (Phragmites australis, Iris pseudacorus, and a mixture of several macrophytes: F4-Reed, F4-Iris and F4-Mixed subunits). Two nine-month periods were monitored after planting, and water quality variables were measured in the inflows and outflows. Waterfowl occupation and plankton biomass were analyzed to evaluate their role in eutrophication reversion. The low removal efficiencies relat…
Long-Term Phytoplankton Dynamics in a Complex Temporal Realm
2019
AbstractFaced with an environment of accelerated change, the long-term dynamics of biotic communities can be approached to build a consistent and causal picture of the communities’ life. We have undertaken a 25-year monthly-sampling study on the phytoplankton of a meso-oligotrophic lake, paying attention to controlling factors of overall biomass (TB) and taxonomical group biomass (TGBs). Long-term series included decreased trends of TB and TGBs, and multi-scale periodicity. A decadal TB periodicity emerged related to nitrogen concentration and Cryptophytes. Annual periodicities were mainly related to air and water temperature controlling the abundance of Chlorophytes or Dinoflagellates. Int…
Zooplankton abundance: A neglected key element in the evaluation of reservoir water quality
2018
Abstract Based on our results, we propose the use of zooplankton abundance (density or biomass) as an indicator to complement the information currently being used concerning the quality of water in reservoirs. Until now, the Water Framework Directive (EU) for lakes and reservoirs has not included zooplankton because the classification of the water trophic state is based on a bottom-up model: an increase in nutrients implies an increase in primary producers and, therefore, poorer water quality. The use of zooplankton has recently been claimed due to their sensitivity to environmental changes and their control over primary producers. From our work, carried out from 2006 to 2009 (summer and wi…
Brassica tardarae (Brassicaceae), a New Species from a Noteworthy Biotope of South-Western Sicily (Italy)
2020
A new species of Brassica sect. Brassica is described here from Sicily (Italy), which is known to be one of the centers of the diversification of wild taxa of this group. The new species (named Brassica tardarae) is restricted to the carbonate cliffs in the Tardara Gorges between Menfi and Sambuca di Sicilia (Agrigento province), an area with a peculiar geological history and where another strictly endemic species was recently described. The morphological relationships between the new species and other similar taxa are discussed, and an analytical key to the Sicilian taxa belonging to the genus Brassica sect. Brassica is also provided.