Search results for "yellow"

showing 10 items of 115 documents

Excitation-Wavelength-Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila

2018

Photoactive yellow proteins (PYPs) make up a diverse class of blue-light-absorbing bacterial photoreceptors. Electronic excitation of the p-coumaric acid chromophore covalently bound within PYP results in triphasic quenching kinetics; however, the molecular basis of this behavior remains unresolved. Here we explore this question by examining the excitation-wavelength dependence of the photodynamics of the PYP from Halorhodospira halophila via a combined experimental and computational approach. The fluorescence quantum yield, steady-state fluorescence emission maximum, and cryotrapping spectra are demonstrated to depend on excitation wavelength. We also compare the femtosecond photodynamics …

LightKineticsQuantum yieldMolecular Dynamics Simulation010402 general chemistryPhotochemistryPhotoreceptors Microbial01 natural sciencesBiochemistry/dk/atira/pure/sustainabledevelopmentgoals/life_below_waterStructure-Activity RelationshipBacterial Proteins0103 physical sciencesSDG 14 - Life Below Waterta116Photoactive Yellow ProteinsQuenching (fluorescence)ta114010304 chemical physicsChemistryHalorhodospira halophilaHydrogen BondingChromophoreFluorescence0104 chemical sciencesHalorhodospira halophilaFemtosecondExcitationBiochemistry
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Neuronal activity triggers uptake of hematopoietic extracellular vesicles in vivo

2019

Communication with the hematopoietic system is a vital component of regulating brain function in health and disease. Traditionally, the major routes considered for this neuroimmune communication are by individual molecules such as cytokines carried by blood, by neural transmission, or, in more severe pathologies, by the entry of peripheral immune cells into the brain. In addition, functional mRNA from peripheral blood can be directly transferred to neurons via extracellular vesicles (EVs), but the parameters that determine their uptake are unknown. Using varied animal models that stimulate neuronal activity by peripheral inflammation, optogenetics, and selective proteasome inhibition of dop…

LipopolysaccharidesMaleGene ExpressionStimulationHippocampusBiochemistryStereotaxic Techniques0302 clinical medicineShort ReportsAnimal CellsMedicine and Health SciencesPremovement neuronal activityBiology (General)Routes of AdministrationNeurons0303 health sciencesBrain MappingKainic AcidBrainAnimal ModelsPeripheralCell biologyHaematopoiesisBioassays and Physiological AnalysisExperimental Organism SystemsHippocampus ; Yellow flourescent protein ; Intravenous injections ; Marker genes ; Gene expression ; Neurons ; Microglial cells ; OptogeneticsFemaleCellular TypesSignal TransductionProteasome Endopeptidase ComplexQH301-705.5Yellow Fluorescent ProteinMice TransgenicGlial CellsMouse ModelsStimulus (physiology)BiologyResearch and Analysis Methods03 medical and health sciencesExtracellular VesiclesImmune systemModel OrganismsIn vivoIntravenous InjectionsGeneticsAnimalsddc:610Molecular Biology TechniquesMolecular BiologyMicroglial Cells030304 developmental biologyInflammationPharmacologyMessenger RNABlood CellsUbiquitinDopaminergic NeuronsBiology and Life SciencesProteinsMarker GenesCell BiologyNeurophysiological AnalysisOptogeneticsLuminescent ProteinsCellular NeuroscienceAnimal Studies030217 neurology & neurosurgeryNeuroscience
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Pyramidal and nonpyramidal callosal cells in the striate cortex of the adult rat

1994

The aim of this study has been to determine the neuronal types (pyramidal and nonpyramidal) within the rat's visual cortex, which project through the corpus callosum. To this end, the morphology and laminar distribution of callosal cells have been investigated by combining Diamidino Yellow retrograde tracing with intracellular injection of Lucifer Yellow in slightly fixed tissue slices. The visual callosal projection arises from pyramidal cells of diverse morphology in layers II to VIb, as well as from several modified pyramids located mainly in layers II, IV (star pyramids) and VIb (horizontal or inverted pyramids and related forms of spiny stellate cells). Our results indicate that in rat…

Lucifer yellowGeneral NeuroscienceAnatomyBiologyCorpus callosumRetrograde tracingMultipolar neuronchemistry.chemical_compoundmedicine.anatomical_structureVisual cortexnervous systemchemistrymedicineHepatic stellate cellAxoplasmic transportNeuroscienceIntracellularJournal of Comparative Neurology
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Complement pore genesis observed in erythrocyte membranes by fluorescence microscopic single-channel recording

1991

The formation and opening of single complement pores could be directly observed in erythrocyte ghosts by confocal laser-scanning microscopy employing the recently introduced method of fluorescence microscopic single-channel recording. Resealed sheep erythrocyte ghosts were incubated with human complement. By limiting the concentration of C8, the eighth component of complement, the fraction of cells rendered permeable for the small polar fluorescent probe Lucifer Yellow was varied between 0.50 and 0.90. Under each condition the flux rate, k, of Lucifer Yellow was determined for a substantial number of ghosts. By analysing the sample population distribution of k the flux rate k1 of ghosts wit…

Lucifer yellowPhotolysisSheepScanning electron microscopeConfocalErythrocyte MembraneAnalytical chemistryComplement System ProteinsCell BiologyModels TheoreticalIsoquinolinesBiochemistryFluorescenceKineticschemistry.chemical_compoundMonomerMembraneMicroscopy FluorescencechemistryMicroscopyFluorescence microscopeAnimalsMolecular BiologyFluorescent DyesResearch ArticleBiochemical Journal
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Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome

2018

Phytochromes are red-light photoreceptors that were first characterized in plants, with homologs in photosynthetic and non-photosynthetic bacteria known as bacteriophytochromes (BphPs). Upon absorption of light, BphPs interconvert between two states denoted Pr and Pfr with distinct absorption spectra in the red and far-red. They have recently been engineered as enzymatic photoswitches for fluorescent-marker applications in non-invasive tissue imaging of mammals. This article presents cryo- and room-temperature crystal structures of the unusual phytochrome from the non-photosynthetic myxobacterium Stigmatella aurantiaca (SaBphP1) and reveals its role in the fruiting-body formation of this ph…

MODULE0301 basic medicinePHOTOACTIVE YELLOW PROTEINSIGNALING MECHANISMabsorption spectraMutantfotobiologiaphytochromesBiochemistryyhteyttäminenbakteeritSTIGMATELLA-AURANTIACA03 medical and health sciencesFRUITING BODY FORMATIONGeneral Materials ScienceMolecular replacementStigmatella aurantiacalcsh:ScienceUNUSUAL BACTERIOPHYTOCHROMEPHOTOCONVERSIONHistidine030102 biochemistry & molecular biologybiologyPhytochromeChemistryCRYSTALLOGRAPHYta1182photosynthetic bacteriaphotoreceptorsGeneral ChemistryChromophoreCondensed Matter Physicsbiology.organism_classification030104 developmental biologyCHROMOPHORE-BINDING DOMAINBiophysicsmyxobacterialcsh:Q3111 BiomedicinePhotosynthetic bacteriaproteiinitMOLECULAR REPLACEMENTBinding domainIUCrJ
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Sub-chronic variable stress induces sex-specific effects on glutamatergic synapses in the nucleus accumbens

2017

Men and women manifest different symptoms of depression and under current diagnostic criteria, depression is twice as prevalent in woman. However, little is known of the mechanisms contributing to these important sex differences. Sub-chronic variable stress (SCVS), a rodent model of depression, induces depression-like behaviors in female mice only, modeling clinical evidence of higher susceptibility to mood disorders in women. Accumulating evidence indicates that altered neuroplasticity of excitatory synapses in the nucleus accumbens (NAc) is a key pathophysiological feature of susceptibility to social stress in males. Here we investigated the effects of SCVS on pre- and post-synaptic prote…

Male0301 basic medicinesex differenceVesicular glutamate transporter 1Nucleus accumbensMedium spiny neuronmedium spiny neuronArticleNucleus Accumbens03 medical and health sciencesGlutamatergicchemistry.chemical_compound0302 clinical medicineStress PhysiologicalstreNeuroplasticityAnimalsSocial stressSex CharacteristicsLucifer yellowNeuronal PlasticityNeuroscience (all)biologynucleus accumbenGeneral NeurosciencePost-Synaptic DensityMice Inbred C57BL030104 developmental biologychemistryplasticitySynapsesVesicular Glutamate Transport Protein 1depressionVesicular Glutamate Transport Protein 2biology.proteinExcitatory postsynaptic potentialFemaleNeuroscience030217 neurology & neurosurgeryNeuroscience
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Malignantly transformed non-parenchymal liver epithelial cells and transformed oval cells suppress the homotypical gap junctional intercellular commu…

1995

Isolated rat liver parenchymal cells (PC) were co-cultured with a non-parenchymal rat liver epithelial cell line (NEC) or with an oval cell line. The homotypical gap junctional intercellular communication (GJIC) between the liver PC was measured after microinjection of Lucifer Yellow by dye transfer. The rat liver PC were dye coupled between 87% and 100% for at least 1 week in both co-cultures, in contrast to PC In monoculture between which no dye coupling was left after 1 week. When liver PC were co-cultured with a transformed and tumorigenic NEC or with a transformed and tumorigenic oval cell line the homotypical GJIC between the liver PC was drastically decreased with culture time, and t…

MaleCancer ResearchPathologymedicine.medical_specialtyCell CommunicationBiologyMalignant transformationRats Sprague-Dawleychemistry.chemical_compoundCell–cell interactionmedicineAnimalsMicroinjectionCell Line TransformedLucifer yellowGap junctionGap JunctionsGeneral MedicineEpitheliumCell biologyRatsmedicine.anatomical_structurechemistryLiverCell cultureIntracellularCarcinogenesis
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Gap junctional intercellular communication of cultured rat liver parenchymal cells is stabilized by epithelial cells and their isolated plasma membra…

1994

The gap junctional intercellular communication (GJIC) determined by measuring dye coupling with Lucifer yellow, decreased within 3 d from 66% to 28% in monocultures of rat liver parenchymal cells. Coculturing of the parenchymal cells with a nonparenchymal epithelial cell line from rat liver resulted in increased and stabilized intercellular communication (83% after 3 d). The presence of isolated plasma membrane vesicles of the nonparenchymal epithelial cells also stabilized the intercellular communication between the liver parenchymal cells (70% after 3 d). When liver parenchymal cells were cocultured with a rat liver fibroblast cell line the gap junctional communication between the parench…

MalePathologymedicine.medical_specialtyCell CommunicationBiologyCell junctionRats Sprague-DawleyCellular and Molecular Neurosciencechemistry.chemical_compoundCell–cell interactionmedicineAnimalsFibroblastMolecular BiologyCells CulturedPharmacologyLucifer yellowCell MembraneGap junctionGap JunctionsEpithelial CellsCell BiologyEpitheliumRatsCell biologymedicine.anatomical_structureLiverchemistryHepatocyteMolecular MedicineIntracellularExperientia
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Continuous-wave dual-wavelength operation at 1062 and 1338nm in Nd3+:YAl3(BO3)4 and observation of yellow laser light generation at 592nm by their se…

2009

Abstract We report simultaneous oscillation in continuous wave at 1062 and 1337 nm in a Nd 3+ :YAl 3 (BO 3 ) 4 nonlinear crystal associated to the infrared laser channels 4 F 3/2  →  4 I 11/2 and 4 F 3/2  →  4 I 13/2 of Nd 3+ . Generation of yellow laser light at 592 nm produced by Type I self-sum-frequency-mixing of both fundamental infrared laser waves is observed under non-optimal phase matching conditions.

Materials sciencebusiness.industryOscillationInfraredFrequency mixingFar-infrared laserYellow laser lightNonlinear opticsAtomic and Molecular Physics and OpticsElectronic Optical and Magnetic MaterialsCrystalOpticsContinuous waveElectrical and Electronic EngineeringPhysical and Theoretical ChemistrybusinessOptics Communications
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Contamination by trace metals and their trophic transfer to the biota in a Mediterranean coastal system affected by gull guano

2013

Transitional environments are vulnerable interface systems, ecologically connected with adjacent systems by several biotic or abiotic flows. The coastal system of the Marinello ponds (Tyrrhenian Sea, Italy) is affected by a colony of yellow-legged gulls Larus michahellis (Naumann, 1840), resident on the cliff beside the ponds. To investigate the role of the gull colony as a potential source of allochthonous non-essential trace metals (As, Cd, Pb and total mercury, THg) and the consequent metal trophic transfer to the biota in the ponds, we collected guano, surface sediment and biota from 3 ponds with different levels of avian input. The highest concentrations were observed in guano and surf…

Mediterranean climateEcologybiologyContaminants; Biomagnification; Seabird; Yellow-legged gull; Allochthonous input; Stable isotope; Mediterranean lagoonYellow-legged gullEcologyBiomagnificationMediterranean lagoonBiotaSeabirdContaminantAquatic ScienceContaminationLarus michahellisbiology.organism_classificationAllochthonous inputStable isotopebiology.animalGuanoEnvironmental scienceSeabirdEcology Evolution Behavior and SystematicsBiomagnificationTrophic level
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