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showing 10 items of 16837 documents

Efficient estimation of generalized linear latent variable models.

2019

Generalized linear latent variable models (GLLVM) are popular tools for modeling multivariate, correlated responses. Such data are often encountered, for instance, in ecological studies, where presence-absences, counts, or biomass of interacting species are collected from a set of sites. Until very recently, the main challenge in fitting GLLVMs has been the lack of computationally efficient estimation methods. For likelihood based estimation, several closed form approximations for the marginal likelihood of GLLVMs have been proposed, but their efficient implementations have been lacking in the literature. To fill this gap, we show in this paper how to obtain computationally convenient estim…

0106 biological sciencesMultivariate statisticsMultivariate analysisComputer scienceBinomials01 natural sciencesPolynomials010104 statistics & probabilityAmoebastilastolliset mallitestimointiProtozoansLikelihood FunctionsMultidisciplinaryApproximation MethodsStatistical ModelsSimulation and ModelingApplied MathematicsStatisticsQLinear modelREukaryotaLaplace's methodData Interpretation StatisticalPhysical SciencesVertebratesMedicineAlgorithmAlgorithmsResearch ArticleOptimizationScienceLatent variableResearch and Analysis Methods010603 evolutionary biologygeneralized linear latent variable modelsSet (abstract data type)BirdsAnimalsComputer Simulation0101 mathematicsta112OrganismsBiology and Life SciencesStatistical modelMarginal likelihoodAlgebraAmniotesMultivariate AnalysisLinear ModelsMathematicsSoftwarePLoS ONE
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Changing winter conditions in the boreal forest : the effects of fluctuating temperature and predation risk on activity and physiological stress leve…

2016

Due to global climate change, the winter conditions in the North are predicted to change, as the time with an intact insulating snow cover gets shorter or disappears altogether. For small mammals, this could cause exposure to strong temperature fluctuations and increased predation risk, inducing severe stress and leading to alterations in the physical condition and behavior. To test this, we exposed bank voles (Myodes glareolus) to different temperature regimes and cues of predator threat under laboratory conditions. The test animals experienced either a stable but cool temperature regime resembling the stable conditions under snow cover, or an unstable temperature regime with cold nights a…

0106 biological sciencesMyodesunstable temperatureEcology05 social sciencesGlobal warmingClimate changeNocturnalBiology010603 evolutionary biology01 natural sciencesPredationstressclimate changeAnimal ecologypredation riskClimate change scenariotalvi0501 psychology and cognitive sciencesAnimal Science and ZoologyEcosystem050102 behavioral science & comparative psychologyCircadian rhythmEcology Evolution Behavior and Systematics
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Phenology of Emergence by Mediterranean Sympatric Cave-Dwelling Bats During Their Breeding Period

2017

The emergence of cave-dwelling bats can be influenced by multiple variables, such as diurnal predator evasion, energetic requirements, and prey abundance. This work aimed to determine emergence patterns of cave-dwelling bat species from roosts over the April–July 2013 period in the Valencian Community (East Spain) by infrared camera and acoustic recordings. We observed that Miniopterus schreibersii left earliest followed by the Myotis myotis/blythii group and Myotis capaccinii and finally Myotis escalerai. This pattern of emergence was observed in four roosts with no significant differences. Miniopterus schreibersii tended to display quicker flight in open areas, compared to the Myotis genu…

0106 biological sciencesMyotis escaleraibiologyPhenology010604 marine biology & hydrobiologyZoologyMyotis myotisbiology.organism_classification010603 evolutionary biology01 natural sciencesPredationCrepuscularSympatric speciationAnimal Science and ZoologyMyotis capacciniiPredatorActa Chiropterologica
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Contribución al conocimiento de los murciélagos (Mammalia, Chiroptera) del Parque Natural de Penyagolosa (provincia de Castellón)

2019

Se exponen los principales resultados obtenidos en los muestreos efectuados en agosto de 2004 en el Parque Natural de Penyagolosa. La comunidad de quirópteros del Parque Natural está integrada por al menos 14 especies. Diez de ellas fueron localizadas en los muestreos, siendo ocho nuevas citas tras ellos. La revisión de la bibliografía e informes técnicos más recientes permiten añadir las restantes cuatro especies. De entre las especies localizadas en los muestreos, destacan las forestales Plecotus auritus (Linnaeus, 1758) y Barbastella barbastellus (Schreber, 1774); las fisurícolas Pipistrellus pipistrellus (Schreber, 1774) y Eptesicus serotinus (Schreber, 1774) y la cavernícola Myotis esc…

0106 biological sciencesMyotis escaleraiespañachiropteraPopulationContext (language use)010603 evolutionary biology01 natural sciencespenyagolosaEptesicus serotinusPipistrellus pipistrelluseducationEcology Evolution Behavior and Systematicseducation.field_of_studybiologyEcologycastellón010604 marine biology & hydrobiologydistribuciónRestricted distributionbiology.organism_classificationBarbastella barbastellusGeographyQL1-991Plecotus auritusAnimal Science and ZoologyZoologyGraellsia
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New national and regional bryophyte records, 43

2015

During the examination of a collection made by the authors in 2009 in San Pedro de Atacama (Antofagasta Region, Chile) one specimen was identified as Bryum incacorralis Herzog, a moss not previously known from Chile (Müller, 2009) and easily confused with some species of Philonotis Brid. (Ochi, 1980). Comparison with the type material confirmed its identity (Holotype: Bolivia, Cochabamba: an Felsen der "Estradillas" bei Incacorral, 3000 m, Herzog s.n., JE! no. 04003475). Bryum incacorralis was first described by Herzog (1909) based on material collected in Cochabamba (Bolivia), and later recorded by Griffin (1977) and O'Shea (2010) from Venezuela. It is placed in the so-called sect. "Alpini…

0106 biological sciencesNeotropicsBryaceaebiologyForestryBryophytaPlant Sciencebiology.organism_classification010603 evolutionary biology01 natural sciencesBryaceaeCiencias BiológicasGeographyBryophyteChile[SDE.BE]Environmental Sciences/Biodiversity and EcologyCiencias de las Plantas BotánicaCIENCIAS NATURALES Y EXACTASEcology Evolution Behavior and SystematicsComputingMilieux_MISCELLANEOUS010606 plant biology & botany
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Nucleotide Variability at the Acetyl Coenzyme A Carboxylase Gene and the Signature of Herbicide Selection in the Grass Weed Alopecurus myosuroides (H…

2004

Acetyl coenzyme A carboxylase (ACCase) is the target of highly effective herbicides. We investigated the nucleotide variability of the ACCase gene in a sample of 18 black-grass (Alopecurus myosuroides [Huds.]) populations to search for the signature of herbicide selection. Sequencing 3,396 bp encompassing ACCase herbicide-binding domain in 86 individuals revealed 92 polymorphisms, which formed 72 haplotypes. The ratio of nonsynonymous versus synonymous substitutions was very low, in agreement with ACCase being a vital metabolic enzyme. Within black grass, most nonsynonymous substitutions were related to resistance to ACCase-inhibiting herbicides. Differentiation between populations was stro…

0106 biological sciencesNonsynonymous substitutionMolecular Sequence DataStatistics as TopicBiologyGenes PlantPoaceae01 natural sciencesLinkage DisequilibriumNucleotide diversity03 medical and health sciences[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyGeneticsVULPIN[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMolecular BiologyGeneAllelesPhylogenyComputingMilieux_MISCELLANEOUSEcology Evolution Behavior and SystematicsSelection (genetic algorithm)030304 developmental biologychemistry.chemical_classificationGenetics0303 health sciencesPolymorphism GeneticBase SequenceModels GeneticHaplotypeAlopecurus myosuroidesGenetic VariationDNASequence Analysis DNAPesticidebiology.organism_classificationProtein Structure TertiaryEnzymeHaplotypeschemistrySoftwareAcetyl-CoA Carboxylase010606 plant biology & botanyMolecular Biology and Evolution
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A miniature world in decline. European Red List of Mosses, Liverworts and Hornworts

2019

AimThis Red List is a summary of the conservation status of the European species of mosses, liverworts and hornworts, collectively known as bryophytes, evaluated according to IUCN’s Guidelines for Application of IUCN Red List Criteria at Regional Level. It provides the first comprehensive, region-wide assessment of bryophytes and it identifies those species that are threatened with extinction at a European level, so that appropriate policy measures and conservation actions, based on the best available evidence, can be taken to improve their status.ScopeAll bryophytes native to or naturalised in Europe (a total of 1,817 species), have been included in this Red List. In Europe, 1,796 species …

0106 biological sciencesNot evaluatedData deficientNear-threatened speciesEcologyBiodiversity15. Life on landthreatened bryophytes species IUCN Europe010603 evolutionary biology01 natural sciencesGeography13. Climate actionThreatened speciesIUCN Red ListConservation statusBryophyte14. Life underwater010606 plant biology & botany
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Atlas of Finnish bats

2019

This atlas is based on information in museum collections, literature, databases and unpublished data. In the last 150 years, the number of bat species in Finland increased from six to thirteen. Of these, five are common and regularly breeding (Eptesicus nilssonii, Myotis brandtii, Myotis daubentonii, Myotis mystacinus, Plecotus auritus), and eight rare (Eptesicus serotinus, Myotis dasycneme, Myotis nattereri, Nyctalus noctula, Pipistrellus nathusii, Pipistrellus pipistrellus, Pipistrellus pygmaeus, Vespertilio murinus), of which breeding of two (M. nattereri, P. nathusii) have been confirmed. The total number of records in the study is 11 234, of which 9717 are identified to species. The re…

0106 biological sciencesNyctalus noctuladatabasesbatsZoologyHABITAT USEunpublished data010603 evolutionary biology01 natural sciencesPipistrellus nathusiiPipistrellus pygmaeustietokannatlepakotEptesicus serotinusPIPISTRELLUS-NATHUSIIPipistrellus pipistrelluskirjallisuuskatsauksetEcology Evolution Behavior and SystematicsNature and Landscape ConservationlajistokartoitusEcologybiologymuseokokoelmatRANGE010604 marine biology & hydrobiologyMyotis nattereriliteraturelevinneisyysROOSTS15. Life on landbiology.organism_classificationMyotis mystacinusGeography1181 Ecology evolutionary biologyWINTERAnimal Science and ZoologyMyotis dasycnememuseum collections
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Ecdysone and ecdysterone in physogastric termite queens and eggs of Macrotermes bellicosus and Macrotermes subhyalinus

1978

Abstract Physogastric queens and freshly laid eggs of two species of termites ( Macrotermes bellicosus and Macrotermes subhyalinus ) are found to contain high levels of ecdysteroids (molting hormones) as indicated by radioimmunoassay and Musca bioassay. Ecdysteroids are accumulated in the ovaries of the queen and then stored in the eggs since newly laid eggs contain ecdysteroid concentrations similar to those found in the ovaries. Gas chromatography-mass spectrometry demonstrates that ecdysone (α-ecdysone) as well as ecdysterone (β-ecdysone) are present in queen ovaries and in eggs and that ecdysone is quantitatively the more important ecdysteroid in both ovary and eggs.

0106 biological sciencesOvum/*analysisEcdysoneanimal structuresInsectaEcdysteroneeducationOvary (botany)Ecdysterone/*analysis01 natural sciencesMacrotermes bellicosus03 medical and health scienceschemistry.chemical_compoundEndocrinologyInsects/*analysisHemolymphHemolymphBotanyHemolymph/analysisAnimals030304 developmental biologyOvum0303 health sciencesEcdysteroidintegumentary systembiologyfungiOvarybiology.organism_classification3. Good health010602 entomologyEcdysteroneEcdysone/*analysischemistryOvary/analysisembryonic structuresAnimal Science and ZoologyFemaleMuscaMoultingEcdysone
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Laurel extracts inhibit quorum sensing, virulence factors and biofilm of foodborne pathogens

2020

Antimicrobial, antibiofilm, anti-Quorum sensing (QS) and virulence factors inhibitory capacity of different polarity Laurus nobilis extracts against several pathogenic microorganisms were studied. Some extracts exhibited antibiotic effect against Staphylococcus aureus multidrug-resistant strains. However, all extracts (100 µg/mL) inhibited to some extent the biofilm of most bacteria tested (until 40% for Gram-negative and 76% for Gram-positive). Hexane (HE) and chloroform extract (CE) were potent inhibitors of S. aureus biofilm and the microscopies further confirmed an important reduction in adherent cells. Polystyrene surfaces coated with these extracts showed a decrease in bacterial adhes…

0106 biological sciencesPYOCYANINVirulenceSwarming motilitymedicine.disease_cause01 natural sciencesMicrobiology//purl.org/becyt/ford/1 [https]chemistry.chemical_compound0404 agricultural biotechnologyPyocyanin010608 biotechnologymedicine//purl.org/becyt/ford/1.6 [https]biologyENZYME INHIBITIONPseudomonas aeruginosaChemistryBiofilm04 agricultural and veterinary sciencesbiology.organism_classification040401 food scienceSWARMINGQuorum sensingStaphylococcus aureusBIOFILMBacteriaFATTY ACIDSFood Science
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