0000000000009896
AUTHOR
Gualtiero Basilone
Identifying small pelagic Mediterranean fish schools from acoustic and environmental data using optimized artificial neural networks
Abstract The Common Fisheries Policy of the European Union aims to exploit fish stocks at a level of Maximum Sustainable Yield by 2020 at the latest. At the Mediterranean level, the General Fisheries Commission for the Mediterranean (GFCM) has highlighted the importance of reversing the observed declining trend of fish stocks. In this complex context, it is important to obtain reliable biomass estimates to support scientifically sound advice for sustainable management of marine resources. This paper presents a machine learning methodology for the classification of pelagic species schools from acoustic and environmental data. In particular, the methodology was tuned for the recognition of an…
Pelagic species identification by using a PNN neural network and echo-sounder data
For several years, a group of CNR researchers conducted acoustic surveys in the Sicily Channel to estimate the biomass of small pelagic species, their geographical distribution and their variations over time. The instrument used to carry out these surveys is the scientific echo-sounder, set for different frequencies. The processing of the back scattered signals in the volume of water under investigation determines the abundance of the species. These data are then correlated with the biological data of experimental catches, to attribute the composition of the various fish schools investigated. Of course, the recognition of the fish schools helps to produce very good results, that is very clo…
Seismic stratigraphy of the north-westernmost area of the Malta Plateau (Sicily Channel): The Middle Pleistocene-Holocene sedimentation in a tidally influenced shelf
In this study we present the results of a seismic-stratigraphic analysis of sub-bottom profiles in the north-westernmost area of the Malta Plateau in order to define the depositional mechanisms for the upper Quaternary sequences. During this interval the morphology of the Malta Plateau was characterized by a ramp and bathymetries not exceeding 200 m. Two major unconformities, related to MIS 6 and MIS 2 (the latter corresponding to the Last Glacial Maximum, LGM), characterize the upper Quaternary sequences. The geometries of the recognized seismic units indicate as depositional mechanisms were controlled by subsidence and sea-level fluctuations. In detail, deposits related to the last glacia…
Different key roles of mesoscale oceanographic structures and ocean bathymetry in shaping larval fish distribution pattern: A case study in Sicilian waters in summer 2009
Fish larvae data collected in year 2009 were used to examine the effects of particular environmental conditions on the structure of larvalassemblages in two oligotrophic Mediterranean areas (the Southern Tyrrhenian Sea and the Strait of Sicily). For this purpose, relationships with environmental variables (temperature, salinity and fluorescence), zooplankton biomass, water circulation and bathymetry are discussed. Hydrodynamic conditions resulted very differently between two study areas. The Southern Tyrrhenian Sea was characterized by moderate shallow circulation compared to the Strait of Sicily. In this framework, distribution pattern of larval density in the Tyrrhenian Sea was mainly dri…
STOCHASTIC DYNAMICS OF TWO PICOPHYTOPLANKTON POPULATIONS IN A REAL MARINE ECOSYSTEM
A stochastic reaction-diffusion-taxis model is analyzed to get the stationary distribution along water column of two species of picophytoplankton, that is picoeukaryotes and Prochlorococcus. The model is valid for weakly mixed waters, typical of the Mediterranean Sea. External random fluctuations are considered by adding a multiplicative Gaussian noise to the dynamical equation of the nutrient concentration. The statistical tests show that shape and magnitude of the theoretical concentration profile exhibit a good agreement with the experimental findings. Finally, we study the effects of seasonal variations on picophytoplankton groups, including an oscillating term in the auxiliary equation…
Mercury in fishes from Augusta Bay (southern Italy): risk assessment and health implication
Our study reports on the total mercury (HgT) concentrations measured in the muscles and livers of several benthic, demersal and pelagic fish species caught inside and outside of Augusta Bay (southern Italy), a semi-enclosed marine area, highly contaminated by the uncontrolled (since the 1950s to 1978s) discharge of the largest European petrochemical plant. Mercury levels in fish tissues are discussed with regard to specific habitat, size and/or age of the specimens and HgT distribution in the bottom sediments. Results suggest a still active Hg release mechanism from the polluted sediments to the marine environment. Also, the high HgT concentrations measured in fishes caught in the external …
Dynamics of Two Picophytoplankton Groups in Mediterranean Sea: Analysis of the Deep Chlorophyll Maximum by a Stochastic Advection-Reaction-Diffusion Model
A stochastic advection-reaction-diffusion model with terms of multiplicative white Gaussian noise, valid for weakly mixed waters, is studied to obtain the vertical stationary spatial distributions of two groups of picophytoplankton, i.e., picoeukaryotes and Prochlorococcus, which account about for 60% of total chlorophyll on average in Mediterranean Sea. By numerically solving the equations of the model, we analyze the one-dimensional spatio-temporal dynamics of the total picophytoplankton biomass and nutrient concentration along the water column at different depths. In particular, we integrate the equations over a time interval long enough, obtaining the steady spatial distributions for th…
Evidence of active fluid seepage (AFS) in the southern region of the central Mediterranean Sea
Abstract Active fluid seepage (AFS) at the seafloor is a global phenomenon associated with seafloor morphologies in different geodynamic contexts. Advanced geophysical techniques have allowed geoscientists to characterise pockmarks, mounds and flares associated with AFS. We present a range of new marine geological data acquired in the southern region of the central Mediterranean Sea (northern Sicily continental margin, northwestern Sicily Channel and offshore of the Maltese Islands), which allow us to identify AFSs. AFSs are spatially distributed as clusters, aligned or isolated at different depths, ranging from few decametres offshore of the Maltese Islands; up to 400 m offshore of norther…
Artificial neural networks for fault tollerance of an air-pressure sensor network
A meteorological tsunami, commonly called Meteotsunami, is a tsunami-like wave originated by rapid changes in barometric pressure that involve the displacement of a body of water. This phenomenon is usually present in the sea cost area of Mazara del Vallo (Sicily, Italy), in particular in the internal part of the seaport canal, sometimes making local population at risk. The Institute for Coastal Marine Environment (IAMC) of the National Research Council in Italy (CNR) have already conducted several studies upon meteotsunami phenomenon. One of the project has regarded the creation of a sensors network composed by micro-barometric sensors, located in 4 different stations close to the seaport …
Calcareous nannofossil surface sediment assemblages from the SicilyChannel (central Mediterranean Sea): palaeoceanographic implications.
Quantitative analysis of 67 calcareous nannofossil assemblages from surface sediments recovered in a wide area across the Sicily Channel has been carried out in order to improve the interpretation of palaeontological data based on this planktonic group in a key area for Mediterranean palaeoceanographic studies. The investigation focused on three case studies that demonstrate the high potentiality of such a combined approach, taking into account the recent distribution of taxa or groups of taxa on the sea floor and the palaeontological record. The distribution of reworked specimens over the northern Sicily Channel sea floor validates the role of southern Sicily as a source region for reworke…
Noise Induced Phenomena in the Dynamics of Two Competing Species
Noise through its interaction with the nonlinearity of the living systems can give rise to counter-intuitive phenomena. In this paper we shortly review noise induced effects in different ecosystems, in which two populations compete for the same resources. We also present new results on spatial patterns of two populations, while modeling real distributions of anchovies and sardines. The transient dynamics of these ecosystems are analyzed through generalized Lotka-Volterra equations in the presence of multiplicative noise, which models the interaction between the species and the environment. We find noise induced phenomena such as quasi-deterministic oscillations, stochastic resonance, noise …
Spatio-temporal dynamics of a planktonic system and chlorophyll distribution in a 2D spatial domain: matching model and data
AbstractField data on chlorophyll distribution are investigated in a two-dimensional spatial domain of the Mediterranean Sea by using for phytoplankton abundances an advection-diffusion-reaction model, which includes real values for physical and biological variables. The study exploits indeed hydrological and nutrients data acquired in situ, and includes intraspecific competition for limiting factors, i.e. light intensity and phosphate concentration. As a result, the model allows to analyze how both the velocity field of marine currents and the two components of turbulent diffusivity affect the spatial distributions of phytoplankton abundances in the Modified Atlantic Water, the upper layer…
Pattern Classification from Multi-beam Acoustic Data Acquired in Kongsfjorden
Climate change is causing a structural change in Arctic ecosystems, decreasing the effectiveness that the polar regions have in cooling water masses, with inevitable repercussions on the climate and with an impact on marine biodiversity. The Svalbard islands under study are an area greatly influenced by Atlantic waters. This area is undergoing changes that are modifying the composition and distribution of the species present. The aim of this work is to provide a method for the classification of acoustic patterns acquired in the Kongsfjorden, Svalbard, Arctic Circle using multibeam technology. Therefore the general objective is the implementation of a methodology useful for identifying the a…
The role of noise on the steady state distributions of phytoplankton populations
The spatio-temporal behaviour of total chlorophyll concentration is investigated in the middle of the Tyrrhenian Sea by using a stochastic approach. The study is based on a reaction-diffusion-taxis model, which is used to analyse the dynamics of five phytoplankton groups, responsible for about 80% of the total chlorophyll a inside the euphotic zone of the water column. The analysis is performed by considering: (i) the intraspecific competition of the phytoplanktonic groups for limiting factors, i.e. light intensity and nutrient concentration, (ii) the seasonal changes of environmental variables, and (iii) the random fluctuations of the components of the velocity field and temperature. Speci…
Automatic classification of acoustically detected krill aggregations: A case study from Southern Ocean
Acoustic surveys represent the standard methodology to assess the spatial distribution and abundance of pelagic organisms characterized by aggregative behaviour. The species identification of acoustically observed aggregations is usually performed by taking into account the biological sampling and according to expert-based knowledge. The precision of survey estimates, such as total abundance and spatial distribution, strongly depends on the efficiency of acoustic and biological sampling as well as on the species identification. In this context, the automatic identification of specific groups based on energetic and morphological features could improve the species identification process, allo…
Unsupervised Classification of Acoustic Echoes from Two Krill Species in the Southern Ocean (Ross Sea)
This work presents a computational methodology able to automatically classify the echoes of two krill species recorded in the Ross sea employing scientific echo-sounder at three different frequencies (38, 120 and 200 kHz). The goal of classifying the gregarious species represents a time-consuming task and is accomplished by using differences and/or thresholds estimated on the energy features of the insonified targets. Conversely, our methodology takes into account energy, morphological and depth features of echo data, acquired at different frequencies. Internal validation indices of clustering were used to verify the ability of the clustering in recognizing the correct number of species. Th…
Depositional mechanism of the upper Pliocene-Pleistocene shelf-slope system of the western Malta Plateau (Sicily Channel)
Abstract A high resolution seismic stratigraphic study of the western edge of the Malta Plateau (central Mediterranean Sea) was conducted to reconstruct the depositional mechanisms of the shelf-slope system since the end of the Messinian salinity crisis (MSC; 5.3 Ma). The accurate interpretation of a large grid of variable-resolution seismic reflection profiles (multichannel and Sub Bottom) allows us to identify and map a Plio-Quaternary sedimentary sequence overlying the Messinian evaporites. The stratal pattern of this sequence is the result of a clinoform prograding system that constitutes the internal structure of a sedimentary shelf developed in a ramp about 2° slope with bathymetries …
The Graham Bank (Sicily Channel, central Mediterranean Sea). Seafloor signatures of volcanic and tectonic controls
Abstract Graham Bank is a dominant physiographic element of the NW Sicily Channel (central Mediterranean Sea), affected in the last 100 years by numerous well-documented volcanic eruptions. We present the first results of a geomorphological study where the Graham Bank region in the depth interval 7–350 m was mapped for the first time with multi-beam echosounder and high-resolution seismic and multi-channel seismic reflection profiles. We describe in high resolution the detailed geomorphological features of Graham Bank, and how the superficial expression of different process and dynamics occurring in the sub-seafloor evidence volcanic and tectonic controls on seafloor morphology across a rel…
Stochastic models for phytoplankton dynamics in Mediterranean Sea
Abstract In this paper, we review some results obtained from three one-dimensional stochastic models, which were used to analyze picophytoplankton dynamics in two sites of the Mediterranean Sea. Firstly, we present a stochastic advection–reaction–diffusion model to describe the vertical spatial distribution of picoeukaryotes in a site of the Sicily Channel. The second model, which is an extended version of the first one, is used to obtain the vertical stationary profiles of two groups of picophytoplankton, i.e. Pelagophytes and Prochlorococcus, in the same marine site as in the previous case. Here, we include intraspecific competition of picophytoplanktonic groups for limiting factors, i.e.…
Modeling of Sensory Characteristics Based on the Growth of Food Spoilage Bacteria
During last years theoretical works shed new light and proposed new hypothesis on the mechanisms which regulate the time behaviour of biological populations in different natural systems. Despite of this, the role of environmental variables in ecological systems is still an open question. Filling this gap of knowledge is a crucial task for a deeper comprehension of the dynamics of biological populations in real ecosystems. In this work we study how the dynamics of food spoilage bacteria influences the sensory characteristics of fresh fish specimens. This topic is crucial for a better understanding of the role played by the bacterial growth on the organoleptic properties, and for the quality …
A novel method to simulate the 3D chlorophyll distribution in marine oligotrophic waters
Abstract A 3D advection-diffusion-reaction model is proposed to investigate the abundance of phytoplankton in a difficult-to-access ecosystem such as the Gulf of Sirte (southern Mediterranean Sea) characterized by oligotrophic waters. The model exploits experimentally measured environmental variables to reproduce the dynamics of four populations that dominate phytoplankton community in the studied area: Synechococcus, Prochlorococcus HL, Prochlorococcus LL and picoeukaryotes. The theoretical results obtained for phytoplankton abundances are converted into chl-a and Dvchl-a concentrations, and the simulated vertical chlorophyll profiles are compared to the corresponding experimentally acquir…
A pattern recognition approach to identify biological clusters acquired by acoustic multi-beam in Kongsfjorden
The Svalbardsis one of the most intensively studied marine regions in the Artic; here the composition and distribution of marine assemblages are changing under the effect of global change, and marine communities are monitored in order to understand the long-term effects on marine biodiversity. In the present work, acoustic data collected in the Kongsfjorden using multi-beam technology was analyzed to develop a methodology for identifying and classifying 3D acoustic patterns related to fish aggregations. In particular, morphological, energetic and depth features were taken into account to develop a multi-variate classification procedure allowing to discriminate fish species. The results obta…
Spatio-temporal behaviour of the deep chlorophyll maximum in Mediterranean Sea: Development of a stochastic model for picophytoplankton dynamics
In this paper, by using a stochastic reaction-diffusion-taxis model, we analyze the picophytoplankton dynamics in the basin of the Mediterranean Sea, characterized by poorly mixed waters. The model includes intraspecific competition of picophytoplankton for light and nutrients. The multiplicative noise sources present in the model account for random fluctuations of environmental variables. Phytoplankton distributions obtained from the model show a good agreement with experimental data sampled in two different sites of the Sicily Channel. The results could be extended to analyze data collected in different sites of the Mediterranean Sea and to devise predictive models for phytoplankton dynam…
Distribution and spatial structure of pelagic fish schools in relation to the nature of the seabed in the Sicily Channel (Central Mediterranean).
Hydroacoustic data collected during two echosurveys carried out in the Sicily Channel in 1998 and 2002 were analysed to investigate the distribution and spatial structure of small pelagic fish species in relation to the sedimentological nature of the sea bottom. The study was carried out on two contiguous areas (labelled ZONE 1 and ZONE 2) of the continental shelf off the southern coast of Sicily, characterised by different dominant texture, ‘sand’ for ZONE 1 and ‘clayey-silt’ for ZONE 2. Simultaneous information on small pelagic fish schools and the seabed was obtained using a quantitative echo-sounder (SIMRAD EK500) that measures echoes due to the scattering from both fish schools and the…