0000000000064464

AUTHOR

Alexander Björling

showing 6 related works from this author

Ubiquitous Structural Signaling in Bacterial Phytochromes

2015

The phytochrome family of light-switchable proteins has long been studied by biochemical, spectroscopic and crystallographic means, while a direct probe for global conformational signal propagation has been lacking. Using solution X-ray scattering, we find that the photosensory cores of several bacterial phytochromes undergo similar large-scale structural changes upon red-light excitation. The data establish that phytochromes with ordinary and inverted photocycles share a structural signaling mechanism and that a particular conserved histidine, previously proposed to be involved in signal propagation, in fact tunes photoresponse.

0303 health sciencesBacteriaPhytochromeProtein dynamicsta1182BiologyX-ray scattering010402 general chemistryBioinformaticsphytochromes01 natural sciences0104 chemical sciences/dk/atira/pure/sustainabledevelopmentgoals/clean_water_and_sanitation03 medical and health sciencesprotein dynamicsBiophysicsGeneral Materials SciencePhytochromePhysical and Theoretical ChemistrySignal transductionSDG 6 - Clean Water and SanitationHistidinesignal transduction030304 developmental biologyJournal of Physical Chemistry Letters
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Structural photoactivation of a full-length bacterial phytochrome

2016

Time-resolved x-ray solution scattering reveals the conformational signaling mechanism of a bacterial phytochrome.

Models Molecular0301 basic medicineProtein ConformationAstrophysics::High Energy Astrophysical Phenomena116 Chemical sciencesPhotoreceptors MicrobialphytochromesQuantitative Biology::Cell BehaviorStructure-Activity Relationship03 medical and health sciencesProtein structureBacterial ProteinsStructural BiologyDeinococcus radioduransBotanyResearch Articles219 Environmental biotechnologyMultidisciplinarybiologyPhytochromeHistidine kinaseta1182SciAdv r-articlesDeinococcus radioduransChromophorebiology.organism_classificationKineticsMicrosecond030104 developmental biologyStructural changephotoactivationBiophysicsPhytochromeFunction (biology)Research Article
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Light-induced Changes in the Dimerization Interface of Bacteriophytochromes

2015

Phytochromes are dimeric photoreceptor proteins that sense red light levels in plants, fungi, and bacteria. The proteins are structurally divided into a light-sensing photosensory module consisting of PAS, GAF, and PHY domains and a signaling output module, which in bacteriophytochromes typically is a histidine kinase (HK) domain. Existing structural data suggest that two dimerization interfaces exist between the GAF and HK domains, but their functional roles remain unclear. Using mutational, biochemical, and computational analyses of the Deinococcus radiodurans phytochrome, we demonstrate that two dimerization interfaces between sister GAF and HK domains stabilize the dimer with approximat…

Histidine KinaseLightProtein ConformationMutantCrystallography X-RayBiochemistryProtein structureBacterial Proteinsx-ray scatteringcell signalingDeinococcusMolecular BiologybiologyPhytochromeHistidine kinaseMutagenesista1182Photoreceptor proteinDeinococcus radioduransCell Biologybiology.organism_classificationphotoreceptormolecular dynamicsProtein Structure TertiaryBiochemistryhigh performance liquid chromatography (HPLC)BiophysicsDeinococcusPhytochromeDimerizationProtein KinasesmutagenesisMolecular BiophysicsJournal of Biological Chemistry
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Light-induced structural changes in a monomeric bacteriophytochrome

2016

International audience; Phytochromes sense red light in plants and various microorganism. Light absorption causes structural changes within the protein, which alter its biochemical activity. Bacterial phytochromes are dimeric proteins, but the functional relevance of this arrangement remains unclear. Here, we use time-resolved X-ray scattering to reveal the solution structural change of a monomeric variant of the photosensory core module of the phytochrome from Deinococcus radiodurans. The data reveal two motions, a bend and a twist of the PHY domain with respect to the chromophore-binding domains. Infrared spectroscopy shows the refolding of the PHY tongue. We conclude that a monomer of th…

0301 basic medicineAllosteric regulationInfrared spectroscopyBiological Systems010402 general chemistry01 natural sciencesARTICLES03 medical and health scienceschemistry.chemical_compoundSDG 17 - Partnerships for the Goalslcsh:QD901-999[CHIM]Chemical SciencesInstrumentationSpectroscopyRadiationPhytochromebiologyChemistryMolecular biophysicsta1182/dk/atira/pure/sustainabledevelopmentgoals/partnershipsDeinococcus radioduransBiochemical ActivityCondensed Matter Physicsbiology.organism_classification0104 chemical sciences030104 developmental biologyMonomerStructural changebacterial phytochromesBiophysicslcsh:CrystallographyStructural Dynamics
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Signal amplification and transduction in phytochrome photosensors

2014

[Introduction] Page 2 of 20 Sensory proteins must relay structural signals from the sensory site over large distances to regulatory output domains. Phytochromes are a major family of red-light sensing kinases that control diverse cell ular functions in plants, bacteria, and fungi. 1-9 Bacterial phytochro mes consist of a photosensory core and a C-te rminal regulatory domain. 10,11 Structures of photosensory cores are reported in the resting state 12-18 and conformational responses to light activat ion have been proposed in the vicinity of the chromophore. 19-23 However, the structure of the signalling state and the mechanism of downstream signal re lay through the photosensory core remain e…

Models MolecularLight Signal TransductionProtein ConformationCrystallography X-RayArticleProtein structureBacterial Proteinsmolecular biophysicsDeinococcusBinding siteCalcium signalingBinding SitesMultidisciplinarybiokemiabiologyPhytochrometa1182Deinococcus radioduransChromophorebiology.organism_classificationBiochemistryBiophysicsDeinococcusPhytochromeTransduction (physiology)röntgenkristallografiaNature
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Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase

2017

Sensor histidine kinases are central to sensing in bacteria and in plants. They usually contain sensor, linker, and kinase modules and the structure of many of these components is known. However, it is unclear how the kinase module is structurally regulated. Here, we use nano- to millisecond time-resolved X-ray scattering to visualize the solution structural changes that occur when the light-sensitive model histidine kinase YF1 is activated by blue light. We find that the coiled coil linker and the attached histidine kinase domains undergo a left handed rotation within microseconds. In a much slower second step, the kinase domains rearrange internally. This structural mechanism presents a t…

Models MolecularkinaasitentsyymitHistidine KinaseLightProtein ConformationScienceQCrystallography X-RayArticleProtein Structure SecondaryaktivointiBacterial ProteinsProtein DomainsX-Ray DiffractionphotoactivationScattering Small AngleNanotechnologysensor histidine kinasesNature Communications
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