0000000000247923

AUTHOR

Roghaeih Ashrafi

0000-0001-8224-5893

showing 10 related works from this author

Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth (Parasemia plantaginis).

2013

Many plants and animals advertise unpalatability through warning signals in the form of colour and shape. Variation in warning signals within local populations is not expected because they are subject to directional selection. However, mounting evidence of warning signal variation within local populations suggests that other selective forces may be acting. Moreover, different selective pressures may act on the individual components of a warning signal. At present, we have a limited understanding about how multiple selection processes operate simultaneously on warning signal components, and even less about their temporal and spatial dynamics. Here, we examined temporal variation of several w…

EstoniaGenetic MarkersMaleAposematismMothsSignalDNA MitochondrialSpatio-Temporal AnalysisGene FrequencyParasemia plantaginisGeneticsAnimalsWings AnimalSelection GeneticEcology Evolution Behavior and SystematicsSelection (genetic algorithm)FinlandCell NucleusWingbiologyDirectional selectionEcologyPigmentationGenetic VariationSequence Analysis DNAbiology.organism_classificationVariation (linguistics)Genetics PopulationPhenotypeEvolutionary biologyGenetic structureta1181Microsatellite RepeatsMolecular ecology
researchProduct

The effect of a temperature-sensitive prophage on the evolution of virulence in an opportunistic bacterial pathogen

2019

AbstractViruses are key actors of ecosystems and have major impacts on global biogeochemical cycles. Prophages deserve particular attention as they are ubiquitous in bacterial genomes and can enter a lytic cycle when triggered by environmental conditions. We explored how temperature affects the interactions between prophages and other biological levels by using an opportunistic pathogen, the bacterium Serratia marcescens, that harbours several prophages and that had undergone an evolution experiment under several temperature regimes. We found that the release of one of the prophages was temperature-sensitive and malleable to evolutionary changes. We further discovered that the virulence of …

2. Zero hungerAbiotic componentGenetics0303 health sciencesExperimental evolution030306 microbiologyHost (biology)VirulenceBacterial genome sizeBiologyTemperateness03 medical and health sciencesLytic cycle13. Climate actionProphage030304 developmental biology
researchProduct

Bacteriophage Resistance Affects Flavobacterium columnare Virulence Partly via Mutations in Genes Related to Gliding Motility and the Type IX Secreti…

2021

Increasing problems with antibiotic resistance have directed interest toward phage therapy in the aquaculture industry. However, phage resistance evolving in target bacteria is considered a challenge. To investigate how phage resistance influences the fish pathogen Flavobacterium columnare, two wild-type bacterial isolates, FCO-F2 and FCO-F9, were exposed to phages (FCO-F2 to FCOV-F2, FCOV-F5, and FCOV-F25, and FCO-F9 to FCL-2, FCOV-F13, and FCOV-F45), and resulting phenotypic and genetic changes in bacteria were analyzed. Bacterial viability first decreased in the exposure cultures but started to increase after 1 to 2 days, along with a change in colony morphology from original rhizoid to …

Phage therapyGliding motilitymedicine.medical_treatmentvirusesVirulenceApplied Microbiology and BiotechnologyFlavobacteriumMicrobiologyBacteriophage03 medical and health sciencesFish DiseasesAntibiotic resistanceBacterial ProteinsFlavobacteriaceae InfectionsmedicineEnvironmental MicrobiologyAnimalsBacteriophagesPathogenBacterial Secretion Systems030304 developmental biology0303 health sciencesEcologybiologyVirulence030306 microbiologyFishesbiology.organism_classificationFlavobacterium columnareMutationBacteriaFood ScienceBiotechnologyApplied and environmental microbiology
researchProduct

Application of high resolution melting assay (HRM) to study temperature-dependent intraspecific competition in a pathogenic bacterium

2017

AbstractStudies on species’ responses to climate change have focused largely on the direct effect of abiotic factors and in particular temperature, neglecting the effects of biotic interactions in determining the outcome of climate change projections. Many microbes rely on strong interference competition; hence the fitness of many pathogenic bacteria could be a function of both their growth properties and intraspecific competition. However, due to technical challenges in distinguishing and tracking individual strains, experimental evidence on intraspecific competition has been limited so far. Here, we developed a robust application of the high-resolution melting (HRM) assay to study head-to…

0106 biological sciences0301 basic medicineGenotypeClimate ChangeScienceintraspecific competitionmedia_common.quotation_subject030106 microbiologyZoologymedicine.disease_causeFlavobacterium010603 evolutionary biology01 natural sciencesArticleCompetition (biology)Intraspecific competitionHigh Resolution Melt03 medical and health sciencesmedicineAnimalsmedia_commonAbiotic componentMultidisciplinarybiologyStrain (chemistry)EcologyQFishesTemperatureRpathogenic bacteriaPathogenic bacteriabiology.organism_classificationhigh-resolution melting (HRM) assay13. Climate actionFlavobacterium columnareMedicinelämpötilaGenetic FitnessBacteriaScientific Reports
researchProduct

Rearing background and exposure environment together explain higher survival of aquaculture fish during a bacterial outbreak

2019

1.Parasitic diseases represent one of the greatest challenges for aquaculture worldwide and there is an increasing emphasis on ecological solutions to prevent infections. One proposed solution is enriched rearing, where traditional stimulus‐poor rearing tanks are equipped with different types of structures to increase habitat complexity. Such spatial enrichment is known to increase survival of fish during parasite epidemics, but the underlying mechanisms are still unclear. 2.We studied whether enriched rearing affected infection of an important fish pathogen Flavobacterium columnare in young Atlantic salmon (Salmo salar) and sea‐migrating brown trout (Salmo trutta). First, we used natural b…

ympäristötekijätenriched rearingDisease epidemiologyZoologyBiologyinfektiotatlantinlohiflavobacterium columnarebakteeritBrown troutbrown trouttaimenkalanviljelyAquacultureGenetic variationvesiviljely (kalatalous)Ecologybusiness.industrydisease epidemiologylohikalatantibiootitOutbreakbiology.organism_classificationkalatauditgeneettinen muunteluFlavobacterium columnareFish <Actinopterygii>businesshenkiinjääminen
researchProduct

Broad thermal tolerance is negatively correlated with virulence in an opportunistic bacterial pathogen

2018

Predicting the effects of global increase in temperatures on disease virulence is challenging, especially for environmental opportunistic bacteria, because pathogen fitness may be differentially affected by temperature within and outside host environment. So far, there is very little empirical evidence on the connections between optimal temperature range and virulence in environmentally growing pathogens. Here, we explored whether the virulence of an environmentally growing opportunistic fish pathogen, Flavobacterium columnare, is malleable to evolutionary changes via correlated selection on thermal tolerance. To this end, we experimentally quantified the thermal performance curves (TPCs) f…

0106 biological sciences0301 basic medicinelämmönsietoGrowing seasonVirulenceZoology010603 evolutionary biology01 natural sciencesthermal tolerancethermal performance curvesbakteerit03 medical and health sciencesOpportunistic pathogenGeneticsPathogenEcology Evolution Behavior and Systematics2. Zero hungerGenetic diversitybiologyHost (biology)opportunistic pathogenta1182virulenssiOriginal Articlesilmastonmuutoksetbiology.organism_classificationvirulenceclimate changetaudinaiheuttajat030104 developmental biology13. Climate actionFlavobacterium columnareta1181Original ArticleGeneral Agricultural and Biological SciencesBacteriaEvolutionary Applications
researchProduct

A multilocus sequence analysis scheme for characterization of Flavobacterium columnare isolates

2015

Background Columnaris disease caused by Flavobacterium columnare is a serious problem in aquaculture, annually causing large economic losses around the world. Despite considerable research, the molecular epidemiology of F. columnare remains poorly understood. Methods We investigated the population structure and spatiotemporal changes in the genetic diversity of F. columnare population in Finland by using a multilocus sequence typing (MLST) and analysis (MLSA) based on DNA sequence variation within six housekeeping genes. A total of 83 strains of F. columnare were collected from eight different areas located across the country between 2003 and 2012. Results Partial sequencing of six housekee…

Microbiology (medical)DNA BacterialGenotypeSequence analysisPopulationMolecular Sequence DataSequence HomologyclonalityAquacultureMLST/MLSA schemeMicrobiologyFlavobacteriumFlavobacterium columnareFish DiseasesFlavobacteriaceae InfectionsGenetic variationAnimalsCluster Analysis14. Life underwatereducationRecombination rateFinlandPhylogenyGeneticsrecombination rateClonalFrameGenetic diversityeducation.field_of_studyMolecular EpidemiologyGenes EssentialbiologyPhylogenetic treeMolecular epidemiologyGenetic VariationSequence Analysis DNAbiology.organism_classificationFlavobacterium columnareMultilocus sequence typingResearch ArticleClonalityMultilocus Sequence TypingBMC Microbiology
researchProduct

Effect of resource availability on evolution of virulence and competition in an environmentally transmitted pathogen

2018

Understanding ecological and epidemiological factors driving pathogen evolution in contemporary time scales is a major challenge in modern health management. Pathogens that replicate outside the hosts are subject to selection imposed by ambient environmental conditions. Increased nutrient levels could increase pathogen virulence by pre-adapting for efficient use of resources upon contact to a nutrient rich host or by favouring transmission of fast-growing virulent strains. We measured changes in virulence and competition in Flavobacterium columnare, a bacterial pathogen of freshwater fish, under high and low nutrient levels. To test competition between strains in genotype mixtures, we devel…

0301 basic medicineAC LYASE ACTIVITYfish diseaseFLEXIBACTER-COLUMNARISDIVERSITYAquacultureApplied Microbiology and BiotechnologybakteeritFish DiseasesAquacultureRAPID EVOLUTIONPathogen1183 Plant biology microbiology virologymedia_commonresource competitionEcologybiologyVirulenceFishesvirulenssibacteriumBiological EvolutionADAPTIVE EVOLUTIONqPCRtaudinaiheuttajatESCHERICHIA-COLIFISH FARMSTRADE-OFFGenotypeympäristötekijätmedia_common.quotation_subject030106 microbiologyZoologyVirulenceMicrobiologyFlavobacteriumCompetition (biology)Nutrient density03 medical and health sciencesFlavobacterium columnareAnimalsravinnepitoisuusHost (biology)business.industryta1183FLAVOBACTERIUM-COLUMNAREIN-VITRO PASSAGESbiology.organism_classificationkalatauditinterference competitionFlavobacterium columnareta1181businessBacteria
researchProduct

Roles of adenine methylation and genetic mutations in adaptation to different temperatures in Serratia marcescens

2019

AbstractEpigenetic modifications can contribute to adaptation, but the relative contributions of genetic and epigenetic variation are unknown. Previous studies on the role of epigenetic changes in adaptation in eukaryotes have nearly exclusively focused on cytosine methylation (m5C), while prokaryotes exhibit a richer system of methyltransferases targetting adenines (m6A) or cytosines (m4C, m5C). DNA methylation in prokaryotes has many roles, but its potential role in adaptation still needs further investigation. We collected phenotypic, genetic, and epigenetic data using single molecule real-time sequencing of clones of the bacterium Serratia marcescens that had undergone experimental evol…

GeneticsRegulation of gene expressionCancer ResearchExperimental evolutionMethyltransferaseDNA methylationPhenotypic traitMethylationEpigeneticsAdaptationBiologyMolecular BiologyPhenotype
researchProduct

Data from: Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth (Parasemia plantaginis)

2014

Many plants and animals advertise unpalatability through warning signals in the form of colour and shape. Variation in warning signals within local populations is not expected because they are subject to directional selection. However, mounting evidence of warning signal variation within local populations suggests that other selective forces may be acting. Moreover, different selective pressures may act on the individual components of a warning signal. At present, we have a limited understanding about how multiple selection processes operate simultaneously on warning signal components, and even less about their temporal and spatial dynamics. Here, we examined temporal variation of several w…

medicine and health care2009-2011UV-signalingcolour polymorphismFluctuating PopulationsLife SciencesMedicineParasemia plantaginisMelanization
researchProduct