0000000000266711

AUTHOR

Nicolas Spinelli

0000-0002-6857-011x

showing 4 related works from this author

Template-Assembled Synthetic G-Quadruplex (TASQ): A Useful System for Investigating the Interactions of Ligands with Constrained Quadruplex Topologies

2010

A new biomolecular device for investigating the interactions of ligands with constrained DNA quadruplex topologies, using surface plasmon resonance (SPR), is reported. Biomolecular systems containing an intermolecular-like G-quadruplex motif 1 (parallel G-quadruplex conformation), an intramolecular G-quadruplex 2, and a duplex DNA 3 have been designed and developed. The method is based on the concept of template-assembled synthetic G-quadruplex (TASQ), whereby quadruplex DNA structures are assembled on a template that allows precise control of the parallel G-quadruplex conformation. Various known G-quadruplex ligands have been used to investigate the affinities of ligands for intermolecular…

Models MolecularDna duplexPorphyrinsStereochemistryOligonucleotides010402 general chemistryG-quadruplexLigands01 natural sciencesCatalysischemistry.chemical_compoundStructure-Activity Relationship[CHIM.ANAL]Chemical Sciences/Analytical chemistry[CHIM]Chemical SciencesComputer SimulationBinding siteSurface plasmon resonancePromoter Regions GeneticNuclear Magnetic Resonance BiomolecularComputingMilieux_MISCELLANEOUSBinding SitesMolecular Structure010405 organic chemistryChemistryOrganic ChemistryGeneral ChemistryDNASurface Plasmon ResonanceAffinities0104 chemical sciencesQuadruplex DNAG-QuadruplexesIntramolecular forceNucleic Acid Conformation[ CHIM.ANAL ] Chemical Sciences/Analytical chemistryDNA
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Prefolded Synthetic G-Quartets Display Enhanced Bioinspired Properties

2016

International audience; A water-soluble template-assembled synthetic G-quartet (TASQ) based on the use of a macrocyclodecapeptide scaffold was designed to display stable intramolecular folds alone in solution. The preformation of the guanine quartet, demonstrated by NMR and CD investigations, results in enhanced peroxidase-type biocatalytic activities and improved quadruplex-interacting properties. Comparison of its DNAzyme-boosting properties with the ones of previously published TASQ revealed that, nowadays, it is the best DNAzyme-boosting agent.

0301 basic medicineModels MolecularGuanineStereochemistryDNAzymewaterSupramolecular chemistryDeoxyribozymednainsights010402 general chemistryG-QuartetsG-quadruplexchemistry[ CHIM ] Chemical Sciences01 natural sciencesCatalysissupramolecular chemistryg-quadruplex structures03 medical and health scienceschemistry.chemical_compoundG-quartets[CHIM]Chemical SciencesrnaComputingMilieux_MISCELLANEOUSligandsbiologyOrganic Chemistry[CHIM.CATA]Chemical Sciences/CatalysisGeneral ChemistryDNA CatalyticSmall moleculeG-quadruplexes0104 chemical sciencesSolutionssmall molecules030104 developmental biologychemistryBiocatalysisIntramolecular forceBiocatalysisNucleic Acid Conformationcyclodecapeptideacid
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Closer to nature: an ATP-driven bioinspired catalytic oxidation process

2013

The capability of DNA to acquire enzyme-like properties has led to the emergence of the so-called DNAzyme field; herein, we take a further leap along this nature-inspired road, demonstrating that a template assembled synthetic G-quartet (TASQ) can act as a pre-catalyst for catalytic peroxidase-mimicking oxidation reactions, whatever its nature (guanine or guanosine-based G-quartets), in an ATP-dependent manner, thereby bringing this bioinspired TASQzyme process even closer to nature.

GuanineDeoxyribozymeGuanosineNanotechnology010402 general chemistry01 natural sciencesRedox[ CHIM ] Chemical SciencesCatalysisCatalysischemistry.chemical_compoundAdenosine TriphosphateMaterials Chemistry[CHIM]Chemical SciencesComputingMilieux_MISCELLANEOUS010405 organic chemistryMetals and AlloysDNA CatalyticGeneral Chemistry[CHIM.CATA]Chemical Sciences/Catalysis0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsG-QuadruplexeschemistryCatalytic oxidationScientific methodCeramics and CompositesOxidation-Reduction
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Surface-immobilized DNAzyme-type biocatalysis

2014

The structure of the double helix of deoxyribonucleic acid (DNA, also called duplex-DNA) was elucidated sixty years ago by Watson, Crick, Wilkins and Franklin. Since then, DNA has continued to hold a fascination for researchers in diverse fields including medicine and nanobiotechnology. Nature has indeed excelled in diversifying the use of DNA: beyond its canonical role of repository of genetic information, DNA could also act as a nanofactory able to perform some complex catalytic tasks in an enzyme-mimicking manner. The catalytic capability of DNA was termed DNAzyme; in this context, a peculiar DNA structure, a quadruple helix also named quadruplex-DNA, has recently garnered considerable i…

StreptavidinSurface PropertiesImmobilized Nucleic AcidsDeoxyribozymeContext (language use)Nanotechnology010402 general chemistryG-quadruplex01 natural sciences[ CHIM ] Chemical Scienceschemistry.chemical_compoundNanobiotechnology[CHIM]Chemical Sciencesheterocyclic compoundsGeneral Materials ScienceComputingMilieux_MISCELLANEOUS010405 organic chemistryDNA Catalytic[CHIM.CATA]Chemical Sciences/Catalysis0104 chemical sciencesG-QuadruplexesPeroxidaseschemistryBiotinylationHelixBiocatalysisOxidation-ReductionDNA
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