0000000000287641

AUTHOR

Sirin Celiksoy

0000-0002-8354-5449

showing 11 related works from this author

Plasmonic nanosensors reveal a height dependence of MinDE protein oscillations on membrane features

2018

6 p.-4 fig.

02 engineering and technologyEscherichia-coli010402 general chemistryCurvature01 natural sciencesBiochemistryCatalysisQuantitative Biology::Subcellular ProcessesColloid and Surface ChemistryNanosensorSpectroscopyPlasmonPhospholipidsHydrophobic residuesPlasmonic nanoparticlesChemistryScatteringSensorsGeneral ChemistryBinding021001 nanoscience & nanotechnology0104 chemical sciencesMembraneMembrane curvatureChemical physics0210 nano-technology
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The role of halide ions in the anisotropic growth of gold nanoparticles: a microscopic, atomistic perspective

2016

We provide a microscopic view of the role of halides in controlling the anisotropic growth of gold nanorods through a combined computational and experimental study. Atomistic molecular dynamics simulations unveil that Br− adsorption is not only responsible for surface passivation, but also acts as the driving force for CTAB micelle adsorption and stabilization on the gold surface in a facet-dependent way. The partial replacement of Br− by Cl− decreases the difference between facets and the surfactant density. Finally, in the CTAC solution, no halides or micellar structures protect the gold surface and further gold reduction should be uniformly possible. Experimentally observed nanoparticle'…

Materials scienceInorganic chemistryGeneral Physics and AstronomyHalideNanoparticle02 engineering and technology010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesMicelle0104 chemical sciencesMolecular dynamicsAdsorptionPulmonary surfactantChemical engineeringColloidal goldNanorodPhysical and Theoretical Chemistry0210 nano-technologyPhysical Chemistry Chemical Physics
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CTAB Stabilizes Silver on Gold Nanorods

2020

We present a study that allows us to explain the chemical changes behind the often observed but so far ununderstood drift of the plasmon resonance of chemically prepared gold nanorods in microfluid...

Materials scienceGeneral Chemical EngineeringMaterials ChemistryNanotechnologyNanorod02 engineering and technologyGeneral ChemistrySurface plasmon resonance010402 general chemistry021001 nanoscience & nanotechnology0210 nano-technology01 natural sciences0104 chemical sciencesChemistry of Materials
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Single Out-of-Resonance Dielectric Nanoparticles as Molecular Sensors.

2021

Light scattering from single nanoparticles and nanostructures is a commonly used readout method for nanosensors. Increasing the spectral sensitivity of resonant nanosensors to changes in their local surrounding has been the focus of many studies. Switching from spectral to intensity monitoring allows one to investigate nonresonant or out-of-resonance dielectric nanoparticles. Here, we systematically compared such dielectric silica nanoparticles with plasmonic gold nanorods by deriving analytical expressions and by performing experiments. The experiments show a similar sensitivity for the detection of an adsorbate layer for both particle types, which is in good agreement with theory. The fla…

NanostructureMaterials sciencePhysics::OpticsNanoparticleBioengineering02 engineering and technologyDielectric01 natural sciencesLight scatteringCondensed Matter::Materials ScienceNanosensorInstrumentationPlasmonFluid Flow and Transfer ProcessesNanotubesbusiness.industryProcess Chemistry and Technology010401 analytical chemistrySurface Plasmon Resonance021001 nanoscience & nanotechnology0104 chemical sciencesNanostructuresSpectral sensitivityOptoelectronicsNanoparticlesNanorodGold0210 nano-technologybusinessACS sensors
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Chemical Interface Damping Depends on Electrons Reaching the Surface.

2017

Metallic nanoparticles show extraordinary strong light absorption near their plasmon resonance, orders of magnitude larger compared to nonmetallic nanoparticles. This "antenna" effect has recently been exploited to transfer electrons into empty states of an attached material, for example to create electric currents in photovoltaic devices or to induce chemical reactions. It is generally assumed that plasmons decay into hot electrons, which then transfer to the attached material. Ultrafast electron-electron scattering reduces the lifetime of hot electrons drastically in metals and therefore strongly limits the efficiency of plasmon induced hot electron transfer. However, recent work has revi…

Work (thermodynamics)ChemistryOrders of magnitude (temperature)ScatteringSurface plasmonGeneral EngineeringPhysics::OpticsGeneral Physics and Astronomy02 engineering and technologyElectron010402 general chemistry021001 nanoscience & nanotechnology01 natural sciences0104 chemical sciencesGeneral Materials ScienceSurface plasmon resonanceElectric currentAtomic physics0210 nano-technologyPlasmonACS nano
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Plasmonic Nanosensors for the Label-Free Imaging of Dynamic Protein Patterns.

2020

We introduce a new approach to monitor the dynamics and spatial patterns of biological molecular assemblies. Our molecular imaging method relies on plasmonic gold nanoparticles as point-like detectors and requires no labeling of the molecules. We show spatial resolution of up to 5 μm and 30 ms temporal resolution, which is comparable to wide-field fluorescence microscopy, while requiring only readily available gold nanoparticles and a dark-field optical microscope. We demonstrate the method on MinDE proteins attaching to and detaching from lipid membranes of different composition for 24 h. We foresee our new imaging method as an indispensable tool in advanced molecular biology and biophysic…

Materials scienceCardiolipinsLipid BilayersMetal NanoparticlesNanotechnologyCell Cycle Proteins02 engineering and technology010402 general chemistry01 natural sciencesNanosensorFluorescence microscopeEscherichia coliGeneral Materials SciencePhysical and Theoretical ChemistryImage resolutionPlasmonAdenosine TriphosphatasesMicroscopyNanotubesEscherichia coli ProteinsPhosphatidylglycerols021001 nanoscience & nanotechnology0104 chemical sciencesMembraneColloidal goldTemporal resolutionPhosphatidylcholinesGoldMolecular imaging0210 nano-technologyThe journal of physical chemistry letters
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Conformational dynamics of a single protein monitored for 24 hours at video rate

2018

We use plasmon rulers to follow the conformational dynamics of a single protein for up to 24 h at a video rate. The plasmon ruler consists of two gold nanospheres connected by a single protein linker. In our experiment, we follow the dynamics of the molecular chaperone heat shock protein 90 (Hsp90), which is known to show “open” and “closed” conformations. Our measurements confirm the previously known conformational dynamics with transition times in the second to minute time scale and reveals new dynamics on the time scale of minutes to hours. Plasmon rulers thus extend the observation bandwidth 3–4 orders of magnitude with respect to single-molecule fluorescence resonance energy transfer a…

0301 basic medicineLetterProtein ConformationMolecular ConformationFOS: Physical sciencesHsp90Bioengineeringsingle molecule02 engineering and technology7. Clean energyQuantitative Biology - Quantitative Methods03 medical and health sciencesMolecular dynamicsFluorescence Resonance Energy TransferNanotechnologyGeneral Materials ScienceHSP90 Heat-Shock ProteinsPhysics - Biological PhysicsQuantitative Methods (q-bio.QM)PlasmonPhysicsVideo rateMechanical EngineeringProtein dynamics92Biomolecules (q-bio.BM)General ChemistrySurface Plasmon Resonance021001 nanoscience & nanotechnologyCondensed Matter PhysicsGold nanospheres030104 developmental biologyFörster resonance energy transferQuantitative Biology - BiomoleculesBiological Physics (physics.bio-ph)Chemical physicsFOS: Biological sciencesprotein dynamicsPlasmon rulernonergodicityGold0210 nano-technologyLinker
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Implantable Sensors Based on Gold Nanoparticles for Continuous Long-Term Concentration Monitoring in the Body.

2021

Implantable sensors continuously transmit information on vital values or biomarker concentrations in bodily fluids, enabling physicians to survey disease progression and monitor therapeutic success. However, currently available technologies still face difficulties with long-term operation and transferability to different analytes. We show the potential of a generalizable platform based on gold nanoparticles embedded in a hydrogel for long-term implanted biosensing. Using optical imaging and an intelligent sensor/reference-design, we assess the tissue concentration of kanamycin in anesthetized rats by interrogating our implanted sensor noninvasively through the skin. Combining a tissue-integ…

Materials scienceMechanical EngineeringAptamerDisease progressionTransferabilityMetal NanoparticlesBioengineeringNanotechnologyHydrogels02 engineering and technologyGeneral ChemistryBiosensing TechniquesProstheses and Implants021001 nanoscience & nanotechnologyCondensed Matter PhysicsRatsOptical imagingIntelligent sensorColloidal goldStill faceAnimalsGeneral Materials ScienceGold0210 nano-technologyBiosensorNano letters
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Intensity-Based Single Particle Plasmon Sensing.

2021

Plasmon sensors respond to local changes of their surrounding environment with a shift in their resonance wavelength. This response is usually detected by measuring light scattering spectra to determine the resonance wavelength. However, single wavelength detection has become increasingly important because it simplifies the setup, increases speed, and improves statistics. Therefore, we investigated theoretically how the sensitivity toward such single wavelength scattering intensity changes depend on the material and shape of the plasmonic sensor. Surprisingly, simple equations describe this intensity sensitivity very accurately and allow us to distinguish the various contributions: Rayleigh…

PhysicsScatteringbusiness.industryMechanical EngineeringPhysics::OpticsBioengineering02 engineering and technologyGeneral Chemistry021001 nanoscience & nanotechnologyCondensed Matter PhysicsLight scatteringSpectral linesymbols.namesakeWavelengthOpticssymbolsGeneral Materials ScienceRayleigh scattering0210 nano-technologySpectroscopybusinessIntensity (heat transfer)PlasmonNano letters
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The role of halide ions in the anisotropic growth of gold nanoparticles: a microscopic, atomistic perspective† †Electronic supplementary information …

2016

We provide a microscopic view of the role of halides in controlling the anisotropic growth of gold nanorods through a combined computational and experimental study.

ChemistryPhysical Chemistry Chemical Physics
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Plasmonic Nanosensors for the Label-Free Imaging of Dynamic Protein Patterns

2020

Additional data to support our work on "Plasmonic Nanosensors for the Label-Free Imaging of Dynamic Protein Patterns" published in the Journal of Physical Chemistry Letters (DOI: 10.1021/acs.jpclett.0c01400) Movies: - S1: MinVideo_EColi.mp4 - S2: MinVideo_DOPC_DOPG_CL.mp4 - S3: MinVideo_DOPC_DOPG.mp4 Audio Files: - S1: MinSound_EColi.mp4 - S2: MinSound_DOPC_DOPG_CL.mp4 - S3: MinSound_DOPC_DOPG.mp4

Label-free NanosensorsProtein PatternsMinDE OscillationsMolecular Imaging
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