0000000000297416

AUTHOR

Heye Zhang

showing 3 related works from this author

Integration of different cardiac electrophysiological models into a single simulation pipeline

2012

Clinical translation of computational models of the heart has been hampered by the absence of complete and rigorous technical and clinical validation, as well as benchmarking of the developed tools. To address this issue, a dataset containing the cardiac anatomy and fibre orientations from magnetic resonance images (MRI), as well as epicardial transmembrane potentials from optical mapping acquired on ex-vivo porcine hearts, have previously been made available to the community. Image processing techniques were developed to integrate MRI images with electrical information. Different models were tested and compared with the integrated data1, including: i) a new methodology to customize and reg…

Membrane potentialComputational modelmedicine.diagnostic_testbusiness.industryOrientation (computer vision)Cardiac anatomyComputer scienceHeart shapeMagnetic resonance imagingImage processingElectrophysiologyOptical mappingmedicinesymbolsMaximum a posteriori estimationsymbols.heraldic_chargeComputer visionArtificial intelligencebusiness2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)
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OpenCMISS: A multi-physics & multi-scale computational infrastructure for the VPH/Physiome project

2011

The VPH/Physiome Project is developing the model encoding standards CellML (cellml.org) and FieldML (fieldml.org) as well as web-accessible model repositories based on these standards (models.physiome.org). Freely available open source computational modelling software is also being developed to solve the partial differential equations described by the models and to visualise results. The OpenCMISS code (opencmiss.org), described here, has been developed by the authors over the last six years to replace the CMISS code that has supported a number of organ system Physiome projects. OpenCMISS is designed to encompass multiple sets of physical equations and to link subcellular and tissue-level b…

Theoretical computer scienceComputer science0206 medical engineeringBiophysics02 engineering and technologyModels BiologicalBiophysical PhenomenaDomain (software engineering)Computational science03 medical and health sciencesSoftwareEncoding (memory)HumansComputer SimulationMolecular BiologyPhysiological Phenomena030304 developmental biology0303 health sciencesbusiness.industryCellMLData structure020601 biomedical engineeringElasticityFinite element methodElectrophysiological PhenomenaPhysiomeFlow (mathematics)businessSoftwareProgress in Biophysics and Molecular Biology
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Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data towards an Integrated Understanding of Cardi…

2011

International audience; Computational models of the heart at various scales and levels of complexity have been independently developed, parameterised and validated using a wide range of experimental data for over four decades. However, despite remarkable progress, the lack of coordinated efforts to compare and combine these computational models has limited their impact on the numerous open questions in cardiac physiology. To address this issue, a comprehensive dataset has previously been made available to the community that contains the cardiac anatomy and fibre orientations from magnetic resonance imaging as well as epicardial transmembrane potentials from optical mapping measured on a per…

Time FactorsComputer scienceSwine[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/ImagingBiophysics030204 cardiovascular system & hematologyIn Vitro Techniquescomputer.software_genreModels BiologicalBiophysical PhenomenaPersonalizationMembrane PotentialsDiffusionPurkinje Fibers03 medical and health sciences0302 clinical medicine[INFO.INFO-TS]Computer Science [cs]/Signal and Image ProcessingOptical mappingMaximum a posteriori estimation[INFO.INFO-IM]Computer Science [cs]/Medical ImagingAnimalsMolecular Biology030304 developmental biology0303 health sciencesComputational modelCardiac electrophysiologybusiness.industryBiophysical PhenomenaExperimental dataReproducibility of ResultsHeartMagnetic Resonance Imaging[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationElectrophysiological PhenomenaSystems IntegrationSystem integrationArtificial intelligenceData miningbusinesscomputerPericardium[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing
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