0000000000299474

AUTHOR

Judith Peters

0000-0001-5151-7710

showing 8 related works from this author

PyDSC: a simple tool to treat differential scanning calorimetry data

2020

AbstractHerein, we describe an open-source, Python-based, script to treat the output of differential scanning calorimetry (DSC) experiments, called pyDSC, available free of charge for download at https://github.com/leonardo-chiappisi/pyDSC under a GNU General Public License v3.0. The main aim of this program is to provide the community with a simple program to analyze raw DSC data. Key features include the correction from spurious signals, and, most importantly, the baseline is computed with a robust, physically consistent approach. We also show that the baseline correction routine implemented in the script is significantly more reproducible than different standard ones proposed by propriet…

Computer science030303 biophysicsDSC03 medical and health sciencesSoftwareDifferential scanning calorimetryprotein conformationPhysical and Theoretical ChemistrySpurious relationshipReliability (statistics)0303 health sciencesReproducibilityInstrument controlSIMPLE (military communications protocol)business.industry030302 biochemistry & molecular biologypolymer stabilityCondensed Matter PhysicsKey featuresbaseline correction540 Chemie und zugeordnete Wissenschaftenphase transitionddc:540businessAlgorithmPython
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Proton dynamics in bacterial spores, a neutron scattering investigation

2014

International audience; Results from first neutron scattering experiments on bacterial spores are reported. The elastic intensities and mean square displacements have a non-linear behaviour as function of temperature, which is in agreement with a model presenting more pronounced variations at around 330 K (57 • C) and 400 K (127 • C). Based on the available literature on thermal properties of bacterial spores, mainly referring to differential scanning calorimetry, they are suggested to be associated to main endothermic transitions induced by coat and/or core bacterial response to heat treatment.

Mean squareProton[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM]ChemistryPhysicsQC1-999[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]Dynamics (mechanics)neutron scatteringAnalytical chemistryNeutron scattering[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyEndothermic processEndospore[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyCrystallographybacterial sporesDifferential scanning calorimetry[ PHYS.PHYS.PHYS-BIO-PH ] Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]Thermal[ SDV.BBM.BS ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]
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IN13 Backscattering Spectrometer at ILL: Looking for Motions in Biological Macromolecules and Organisms

2008

In 1998, three partner groups (the French institutions Institut de Biologie Structurale and the Leon Brillouin Laboratory and the Italian Istituto Nazionale per la Fisica della Materia, now merged with the Consiglio Nazionale delle Ricerche, INFM-CNR) applied to operate the thermal backscattering spectrometer IN13, at the Institut Laue Langevin, as a French-Italian Collaborative Research Group (CRG). The plan was to have access to a dedicated spectrometer in order to explore how far neutron scattering could contribute to the understanding of dynamics in biological macromolecules: how “flexible” must be a biological object to perform its function?

PhysicsNuclear and High Energy PhysicsSpectrometerbusiness.industryneutron scattering02 engineering and technologytechnique010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesAtomic and Molecular Physics and Optics0104 chemical sciencesspectrometryOpticsinstrumentbiological physics[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det]0210 nano-technologybusinessComputingMilieux_MISCELLANEOUS
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Anomalous water dynamics in brain: a combined diffusion magnetic resonance imaging and neutron scattering investigation

2019

International audience; Water diffusion is an optimal tool for investigating the architecture of brain tissue on which modern medical diagnostic imaging techniques rely. However, intrinsic tissue heterogeneity causes systematic deviations from pure free-water diffusion behaviour. To date, numerous theoretical and empirical approaches have been proposed to explain the non-Gaussian profile of this process. The aim of this work is to shed light on the physics piloting water diffusion in brain tissue at the micrometre-to-atomic scale. Combined diffusion magnetic resonance imaging and first pioneering neutron scattering experiments on bovine brain tissue have been performed in order to probe dif…

Medical diagnosticMaterials science[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/ImagingQuantitative Biology::Tissues and OrgansPhysics::Medical PhysicsBiomedical EngineeringBiophysicsproton dynamicsBioengineeringbrain imagingNeutron scatteringBiochemistryAtomic unitsBiomaterials03 medical and health sciences0302 clinical medicineTissue heterogeneityWater dynamicsNuclear magnetic resonancemedicineAnimalsDiffusion (business)030304 developmental biologydiffusion magnetic resonance imaging0303 health sciencesProton dynamicmedicine.diagnostic_testneutron scatteringBrainWaterMagnetic resonance imagingwater diffusionLife Sciences–Physics interfaceMagnetic Resonance ImagingSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Neutron Diffraction[SDV.IB.IMA] Life Sciences [q-bio]/Bioengineering/ImagingBovine brainBrain imaging; Diffusion magnetic resonance imaging; Neutron scattering; Proton dynamics; Water diffusionCattle030217 neurology & neurosurgeryBiotechnology
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Mobility of a Mononucleotide within a Lipid Matrix: A Neutron Scattering Study

2017

International audience; An essential question in studies on the origins of life is how nucleic acids were first synthesized and then incorporated into compartments about 4 billion years ago. A recent discovery is that guided polymerization within organizing matrices could promote a non-enzymatic condensation reaction allowing the formation of RNA-like polymers, followed by encapsulation in lipid membranes. Here, we used neutron scattering and deuterium labelling to investigate 5'-adenosine monophosphate (AMP) molecules captured in a multilamellar phospholipid matrix. The aim of the research was to determine and compare how mononucleotides are captured and differently organized within matric…

0301 basic medicinemultilamellar lipid matrix[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]neutron scattering; multilamellar lipid matrix; mononucleotide mobility; hydrationPhospholipidNeutron scattering010402 general chemistry01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyArticle03 medical and health scienceschemistry.chemical_compoundMoleculelcsh:ScienceLipid bilayerEcology Evolution Behavior and Systematicschemistry.chemical_classification[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM]neutron scatteringPaleontologyPolymer0104 chemical sciencesmononucleotide mobility[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]030104 developmental biologyMembranechemistryBiochemistryDeuteriumPolymerizationSpace and Planetary ScienceChemical physicslcsh:Qlipids (amino acids peptides and proteins)hydration
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Experimental evidence for a liquid-liquid crossover in deeply cooled confined water.

2014

International audience; In this work we investigate, by means of elastic neutron scattering, the pressure dependence of mean square displacements (MSD) of hydrogen atoms of deeply cooled water confined in the pores of a three-dimensional disordered SiO 2 xerogel; experiments have been performed at 250 and 210 K from atmospheric pressure to 1200 bar. The " pressure anomaly " of supercooled water (i.e., a mean square displacement increase with increasing pressure) is observed in our sample at both temperatures; however, contrary to previous simulation results and to the experimental trend observed in bulk water, the pressure effect is smaller at lower (210 K) than at higher (250 K) temperatur…

liquid-liquid transitionPhase transitionPACS: 64.70.Ja 64.70.pm 25.40.DnMaterials scienceNeutron diffractionGeneral Physics and AstronomyThermodynamicsNeutron scatteringSettore FIS/03 - Fisica Della MateriaPhase TransitionNuclear magnetic resonanceWater Movementsglass transitionElastic neutron scattering[PHYS.COND]Physics [physics]/Condensed Matter [cond-mat]SupercoolingElastic neutron scattering; calorimetry; glass transition; liquid-liquid transitionAtmospheric pressure[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Structural Biology [q-bio.BM]Calorimetry Differential ScanningWaterSilicon DioxideSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Cold Temperature[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]Neutron DiffractionModels ChemicalGlass transitioncalorimetryHydrophobic and Hydrophilic InteractionsAmbient pressureBar (unit)HydrogenPhysical review letters
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Water Dynamics in Neural Tissue

2013

Water dynamics in post-mortem two-years old bovine cerebral right hemisphere has been investigated through Elastic and Quasi-elastic Neutron Scattering. Experimental parameters such as stability in time of the proton dynamics, data reproducibility and changes in the tissues dynamics upon the conservation protocol, cryogenic towards formalin addition, have been carefully investigated. Results are extremely encouraging and comparisons to magnetic resonance imaging findings are discussed.

ReproducibilityMaterials sciencemedicine.diagnostic_testProtonneutron scatteringDynamics (mechanics)proton dynamicsGeneral Physics and AstronomyMagnetic resonance imagingNeutron scatteringNuclear magnetic resonanceWater dynamicsmedicineRight hemispherediffusion magnetic resonance imagingJournal of the Physical Society of Japan
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The effects of pressure on the energy landscape of proteins

2018

AbstractProtein dynamics is characterized by fluctuations among different conformational substates, i.e. the different minima of their energy landscape. At temperatures above ~200 K, these fluctuations lead to a steep increase in the thermal dependence of all dynamical properties, phenomenon known as Protein Dynamical Transition. In spite of the intense studies, little is known about the effects of pressure on these processes, investigated mostly near room temperature. We studied by neutron scattering the dynamics of myoglobin in a wide temperature and pressure range. Our results show that high pressure reduces protein motions, but does not affect the onset temperature for the Protein Dynam…

0301 basic medicineMaterials science[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]lcsh:MedicineProtein dynamicsNeutron scatteringMolecular Dynamics Simulation01 natural sciencesArticleBiomaterials03 medical and health sciencesMolecular dynamicschemistry.chemical_compoundProtein Domains0103 physical sciencesThermalPressureAnimalsElastic neutron scatteringHorses010306 general physicslcsh:ScienceComputingMilieux_MISCELLANEOUSRange (particle radiation)Quantitative Biology::BiomoleculesMultidisciplinaryMyoglobinProtein dynamicslcsh:RTemperatureEnergy landscape030104 developmental biologyTemperature and pressureMyoglobinchemistrySoft MatterChemical physicsThermodynamicslcsh:QMolecular BiophysicsScientific Reports
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