0000000000303680
AUTHOR
Volker Loeschcke
Responses to Developmental Temperature Fluctuation in Life History Traits of Five Drosophila Species (Diptera: Drosophilidae) from Different Thermal Niches
Simple Summary Most laboratory experiments on insects to date have been conducted using constant temperature settings. Even when the purpose of the study was to investigate effects of temperature, insects have mostly been kept at different but constant temperatures ignoring natural variation in temperature. Here we investigated effects of simple daily temperature fluctuation (22.5/27.5 °C and 20/30 °C) on some development characteristics in five species of fruit flies (Drosophila) originating from areas with different temperature profiles. We demonstrated how species of the same genus can show substantial differences when developing at fluctuating temperatures not always predictable by deve…
The discovery, distribution and diversity of DNA viruses associated withDrosophila melanogasterin Europe
AbstractDrosophila melanogasteris an important model for antiviral immunity in arthropods, but very few DNA viruses have been described from the family Drosophilidae. This deficiency limits our opportunity to use natural host-pathogen combinations in experimental studies, and may bias our understanding of theDrosophilavirome. Here we report fourteen DNA viruses detected in a metagenomic analysis of approximately 6500 pool-sequencedDrosophila, sampled from 47 European locations between 2014 and 2016. These include three new Nudiviruses, a new and divergent Entomopox virus, a virus related toLeptopilina boulardifilamentous virus, and a virus related toMusca domesticasalivary gland hypertrophy…
Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource
Abstract Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last 20 years. A major challenge is the integration of these disparate datasets, often generated using different sequencing technologies and bioinformatic pipelines, which hampers our ability to address questions about the evolution and population structure of this species. Here we address these issues by developing a bioinformatics pipeline that maps pooled sequencing (Pool-Seq) reads from D. melanogaster to a hologenome consisting of fly and symbiont genomes and estimates allele frequenc…
Constant, cycling, hot and cold thermal environments: strong effects on mean viability but not on genetic estimates
It has frequently been suggested that trait heritabilities are environmentally sensitive, and there are genetic trade-offs between tolerating different environments such as hot and cold or constant and fluctuating temperatures. Future climate predictions suggest an increase in both temperatures and their fluctuations. How species will respond to these changes is uncertain, particularly as there is a lack of studies which compare genetic performances in constant vs. fluctuating environments. In this study, we used a nested full-sib/half-sib breeding design to examine how the genetic variances and heritabilities of egg-to-adult viability differ at high and low temperatures with and without da…
A hierarchical analysis of genetic structure and variability in patchily distributed coexisting Chiastocheta species (Diptera:Anthomyiidae)
The pattern of genetic variation in four coexisting fly species of the genus Chiastocheta was studied by allozyme electrophoresis. The fly species are confined to patches of one plant, Trollius europaeus, and thus experience very similar habitat fluctuations. Collection sites were chosen in a hierarchical fashion and F-statistics were estimated at three levels: intraregion, inter-region and total population. Population characteristic genetic parameters were compared within and among species and were related to the hierarchical level. The species were used as replicate experiments for inference of habitat history, and the hierarchical levels were used as inference for specific gene flow patt…
Drosophila Evolution over Space and Time (DEST) : A New Population Genomics Resource
Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last years. A major challenge is the integration of disparate datasets, often generated using different sequencing technologies and bioinformatic pipelines, which hampers our ability to address questions about the evolution of this species. Here we address these issues by developing a bioinformatics pipeline that maps pooled sequencing (Pool-Seq) reads from D. melanogaster to a hologenome consisting of fly and symbiont genomes and estimates allele frequencies using either a heuristic (PoolSNP) or a…
Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
Genetic variation is the fuel of evolution, with standing genetic variation especially important for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of genetic variation in natural populations have been challenging, as comprehensive sampling is logistically difficult, and sequencing of entire populations costly. Here, we address these issues using a collaborative approach, sequencing 48 pooled population samples from 32 locations, and perform the first continent-wide genomic analysis of genetic variation in European Drosophila melanogaster. Our analyses uncover longitudinal population structure, provide evidence for continent-wide selective sweeps, ide…
DOES ENVIRONMENTAL ROBUSTNESS PLAY A ROLE IN FLUCTUATING ENVIRONMENTS?
Fluctuating environments are expected to select for individuals that have highest geometric fitness over the experienced environments. This leads to the prediction that genetically determined environmental robustness in fitness, and average fitness across environments should be positively genetically correlated to fitness in fluctuating environments. Because quantitative genetic experiments resolving these predictions are missing, we used a full-sib, half-sib breeding design to estimate genetic variance for egg-to-adult viability in Drosophila melanogaster exposed to two constant or fluctuating temperatures that were above the species' optimum temperature, during development. Viability in t…
The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe
Drosophila melanogaster is an important model for antiviral immunity in arthropods, but very few DNA viruses have been described from the family Drosophilidae. This deficiency limits our opportunity to use natural host-pathogen combinations in experimental studies, and may bias our understanding of the Drosophila virome. Here, we report fourteen DNA viruses detected in a metagenomic analysis of 6668 pool-sequenced Drosophila, sampled from forty-seven European locations between 2014 and 2016. These include three new nudiviruses, a new and divergent entomopoxvirus, a virus related to Leptopilina boulardi filamentous virus, and a virus related to Musca domestica salivary gland hypertrophy viru…
Can evolution of sexual dimorphism be triggered by developmental temperatures?
Genetic prerequisites for the evolution of sexual dimorphism, sex-specific heritabilities and low or negative genetic correlations between homologous traits in males and females are rarely found. However, sexual dimorphism is evolving rapidly following environmental change, suggesting that sexual dimorphism and its genetic background could be environmentally sensitive. Yet few studies have explored the sensitivity of the genetic background of sexual dimorphism on environmental variation. In this study, on Drosophila melanogaster, we used a large nested full-sib–half-sib breeding design where families were split into four different developmental temperatures: two constant temperature treatme…
The importance of environmental microbes for Drosophila melanogaster during seasonal macronutrient variability
AbstractExperiments manipulating the nutritional environment and the associated microbiome of animals have demonstrated their importance for key fitness components. However, there is little information on how macronutrient composition and bacterial communities in natural food sources vary across seasons in nature and on how these factors affect the fitness components of insects. In this study, diet samples from an orchard compost heap, which is a natural habitat for many Drosophila species and other arthropods, were collected over 9 months covering all seasons in a temperate climate. We developed D. melanogaster on diet samples and investigated stress resistance and life-history traits as w…