0000000000379143

AUTHOR

Ecosse L. Lamoureux

showing 4 related works from this author

Classification of SD-OCT Volumes for DME Detection: An Anomaly Detection Approach

2016

International audience; Diabetic Macular Edema (DME) is the leading cause of blindness amongst diabetic patients worldwide. It is characterized by accumulation of water molecules in the macula leading to swelling. Early detection of the disease helps prevent further loss of vision. Naturally, automated detection of DME from Optical Coherence Tomography (OCT) volumes plays a key role. To this end, a pipeline for detecting DME diseases in OCT volumes is proposed in this paper. The method is based on anomaly detection using Gaussian Mixture Model (GMM). It starts with pre-processing the B-scans by resizing, flattening, filtering and extracting features from them. Both intensity and Local Binar…

SD-OCTgenetic structuresComputer scienceLocal binary patternsDiabetic macular edema[ INFO.INFO-CV ] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]01 natural sciences010309 optics03 medical and health sciencesGaussian Mixture Model0302 clinical medicine[INFO.INFO-CV] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Optical coherence tomography0103 physical sciencesmedicineComputer visionSensitivity (control systems)Local Binary PatternBlindnessmedicine.diagnostic_testbusiness.industryAnomaly (natural sciences)[INFO.INFO-CV]Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]medicine.diseaseMixture modeleye diseasesDiabetic Macular EdemaOutlierAnomaly detectionArtificial intelligencebusiness030217 neurology & neurosurgery
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Classification of SD-OCT Volumes Using Local Binary Patterns: Experimental Validation for DME Detection

2016

International audience; This paper addresses the problem of automatic classification of Spectral Domain OCT (SD-OCT) data for automatic identification of patients with Diabetic Macular Edema (DME) versus normal subjects. Optical Coherence Tomography (OCT) has been a valuable diagnostic tool for DME, which is among the most common causes of irreversible vision loss in individuals with diabetes. Here, a classification framework with five distinctive steps is proposed and we present an extensive study of each step. Our method considers combination of various pre-processings in conjunction with Local Binary Patterns (LBP) features and different mapping strategies. Using linear and non-linear cl…

genetic structures[INFO.INFO-IM] Computer Science [cs]/Medical Imaging[ SPI.SIGNAL ] Engineering Sciences [physics]/Signal and Image processing[ INFO.INFO-CV ] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]0302 clinical medicine[INFO.INFO-CV] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Segmentationlcsh:OphthalmologySpeckleLBPDiagnosisPrevalencePreprocessorComputer visionSegmentationmedicine.diagnostic_test[ INFO.INFO-IM ] Computer Science [cs]/Medical ImagingExperimental validationDiabetic Macular Edema[ SDV.MHEP.OS ] Life Sciences [q-bio]/Human health and pathology/Sensory OrgansOptical Coherence Tomography[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processingResearch ArticleArticle SubjectLocal binary patterns03 medical and health sciencesSpeckle patternOptical coherence tomography[ SDV.MHEP ] Life Sciences [q-bio]/Human health and pathologyMedical imagingmedicineDME[INFO.INFO-IM]Computer Science [cs]/Medical ImagingCoherence (signal processing)Texture[SDV.MHEP.OS]Life Sciences [q-bio]/Human health and pathology/Sensory OrgansRetinopathy[SPI.SIGNAL] Engineering Sciences [physics]/Signal and Image processingbusiness.industry[INFO.INFO-CV]Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Pattern recognitioneye diseasesOphthalmologyOCTlcsh:RE1-994030221 ophthalmology & optometryImagesArtificial intelligencebusiness030217 neurology & neurosurgery[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology
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Genetic variants linked to myopic macular degeneration in persons with high myopia: CREAM Consortium.

2019

Purpose: To evaluate the roles of known myopia-associated genetic variants for development of myopic macular degeneration (MMD) in individuals with high myopia (HM), using case-control studies from the Consortium of Refractive Error and Myopia (CREAM). Methods: A candidate gene approach tested 50 myopia-associated loci for association with HM and MMD, using meta-analyses of case-control studies comprising subjects of European and Asian ancestry aged 30 to 80 years from 10 studies. Fifty loci with the strongest associations with myopia were chosen from a previous published GWAS study. Highly myopic (spherical equivalent [SE] ≤ -5.0 diopters [D]) cases with MMD (N = 348), and two sets of cont…

Refractive errorCandidate genegenetic structuresEmmetropiaGenome-wide association studySensory disorders Donders Center for Medical Neuroscience [Radboudumc 12]Macular DegenerationMathematical and Statistical TechniquesMedicine and Health SciencesMyopiaGeriatric OphthalmologyDioptreVisual ImpairmentsAged 80 and overMultidisciplinaryQRetinal DegenerationStatisticsRGenomicsMetaanalysisPhenotypeResearch DesignPhysical SciencesMedicineRetinal DisordersFemaleAnatomyResearch Articlemedicine.medical_specialtyScienceOcular AnatomySingle-nucleotide polymorphismResearch and Analysis MethodsRetinaOcular SystemOphthalmologyGeneticsGenome-Wide Association StudiesmedicineHumansStatistical Methodsbusiness.industryGene Expression ProfilingCase-control studyBiology and Life SciencesComputational BiologyGenetic VariationCorrectionHuman GeneticsMacular degenerationGenome Analysismedicine.diseaseeye diseasesOphthalmologyGenetic LociGeriatricsMacular DisordersCase-Control StudiesEyessense organsbusinessHeadMathematicsPloS one
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Classification of SD-OCT volumes with multi pyramids, LBP and HOG descriptors: application to DME detections.

2016

This paper deals with the automated detection of Diabetic Macular Edema (DME) on Optical Coherence Tomography (OCT) volumes. Our method considers a generic classification pipeline with preprocessing for noise removal and flattening of each B-Scan. Features such as Histogram of Oriented Gradients (HOG) and Local Binary Patterns (LBP) are extracted and combined to create a set of different feature vectors which are fed to a linear-Support Vector Machines (SVM) Classifier. Experimental results show a promising sensitivity/specificity of 0.75/0.87 on a challenging dataset.

Support Vector Machinegenetic structuresDatabases FactualComputer science[INFO.INFO-IM] Computer Science [cs]/Medical Imaging02 engineering and technology[ SPI.SIGNAL ] Engineering Sciences [physics]/Signal and Image processing[ INFO.INFO-CV ] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]01 natural sciences[INFO.INFO-CV] Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]0202 electrical engineering electronic engineering information engineeringImage Processing Computer-AssistedSegmentationComputer visionmedicine.diagnostic_test[ INFO.INFO-IM ] Computer Science [cs]/Medical ImagingDiabetic retinopathyHistogram of oriented gradientsmedicine.anatomical_structure020201 artificial intelligence & image processing[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processingTomography Optical CoherenceLocal binary patternsFeature vectorDiabetic macular edemaFeature extractionComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONImage processingSensitivity and SpecificityMacular Edema010309 opticsOptical coherence tomographyHistogram0103 physical sciencesmedicine[INFO.INFO-IM]Computer Science [cs]/Medical ImagingHumansMacular edema[SPI.SIGNAL] Engineering Sciences [physics]/Signal and Image processingRetinaDiabetic Retinopathybusiness.industry[INFO.INFO-CV]Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]Pattern recognitionImage segmentationmedicine.diseaseeye diseasesSupport vector machineComputingMethodologies_PATTERNRECOGNITIONsense organsArtificial intelligencebusinessAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
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