0000000000726929

AUTHOR

Philippe J. Sansonetti

showing 5 related works from this author

Functional genomics of Lactobacillus casei establishment in the gut

2014

International audience; Although the composition of the gut microbiota and its symbiotic contribution to key host physiological functions are well established, little is known as yet about the bacterial factors that account for this symbiosis. We selected Lactobacillus casei as a model microorganism to proceed to genomewide identification of the functions required for a symbiont to establish colonization in the gut. As a result of our recent development of a transposon-mutagenesis tool that overcomes the barrier that had prevented L. casei random mutagenesis, we developed a signature-tagged mutagenesis approach combining whole-genome reverse genetics using a set of tagged transposons and in…

Transposable elementLactobacillus caseiMESH: MutationMutagenesis (molecular biology technique)MESH: RabbitsGenomicsBiologyMESH: Genome BacterialGenomedigestive system03 medical and health sciencesIleumLactic acid bacteriaAnimalsMESH: AnimalsGene030304 developmental biologyMESH: MutagenesisGenetics0303 health sciencesMultidisciplinaryMESH: Lactobacillus casei030306 microbiologyMESH: Genomicsdigestive oral and skin physiologyfood and beveragesGenomicsbiology.organism_classificationReverse geneticsCommensalismLacticaseibacillus caseiPNAS PlusMutagenesisMESH: IleumMutationMESH: Genome-Wide Association StudybacteriaRabbitsFunctional genomics[SDV.AEN]Life Sciences [q-bio]/Food and NutritionGenome BacterialGenome-Wide Association Study
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Study of the cwaRS-ldcA Operon Coding a Two-Component System and a Putative L,D-Carboxypeptidase in Lactobacillus paracasei

2020

International audience; The cell surface is the primary recognition site between the bacterium and the host. An operon of three genes, LSEI_0219 (cwaR), LSEI_0220 (cwaS), and LSEI_0221 (ldcA), has been previously identified as required for the establishment of Lactobacillus paracasei in the gut. The genes cwaR and cwaS encode a predicted two-component system (TCS) and ldcA a predicted D-alanyl-D-alanine carboxypeptidase which is a peptidoglycan (PG) biosynthesis enzyme. We explored the functionality and the physiological role of these three genes, particularly their impact on the bacterial cell wall architecture and on the bacterial adaptation to environmental perturbations in the gut. The …

Microbiology (medical)host-microbe interactionOperonAntimicrobial peptidesMutantlcsh:QR1-502peptidoglycanMicrobiologyhost–microbe interactionlcsh:Microbiology03 medical and health scienceschemistry.chemical_compoundantimicrobial peptides[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular Biology[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyGene030304 developmental biologyRegulation of gene expression0303 health sciencesbiology030306 microbiologyChemistryCarboxypeptidase[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyTwo-component regulatory systemcarboxypeptidaselactic acid bacteriaBiochemistrytwo-component systembiology.proteinPeptidoglycan[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriologygene regulation
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Rapid 96-well plates DNA extraction and sequencing procedures to identify genome-wide transposon insertion sites in a difficult to lyse bacterium: La…

2014

International audience; Random transposon mutagenesis followed by adequate screening methods is an unavoidable procedure to characterize genetics of bacterial adaptation to environmental changes. We have recently constructed a mutant library of Lactobacillus casei and we aimed to fully annotate it. However, we have observed that, for L. casei which is a difficult to lyse bacterium, methods used to identify the transposon insertion site in a few mutants (transposon rescue by restriction and recircularization or PCR-based methods) were not transposable for a larger number because they are too time-consuming and sometimes not reliable. Here, we describe a method for large-scale and reliable id…

DNA BacterialGenetics MicrobialMicrobiology (medical)Transposable elementtransposon mutagenesisLactobacillus caseiSanger sequencingMutantMicrobiologyGenomeInsertional mutagenesis03 medical and health sciencesBacterial geneticsMESH: Gene LibraryLactic acid bacteriaMolecular BiologyDNA extractionMESH: High-Throughput Nucleotide SequencingGene Library030304 developmental biologyGenetics0303 health sciencesbiologyMESH: Lactobacillus casei030306 microbiologyHigh-Throughput Nucleotide SequencingMESH: Genetics Microbialbiology.organism_classificationDNA extractionMESH: DNA Bacterial[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyLacticaseibacillus caseiMutagenesis Insertionalgenomic DNAMESH: DNA Transposable ElementsMESH: Mutagenesis InsertionalDNA Transposable ElementsTransposon mutagenesisLactobacillus casei
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Development of an Efficient In Vivo System (P-junc-TpaseIS(1223)) for Random Transposon Mutagenesis of Lactobacillus casei

2012

ABSTRACT The random transposon mutagenesis system P junc -TpaseIS 1223 is composed of plasmids pVI129, expressing IS 1223 transposase, and pVI110, a suicide transposon plasmid carrying the P junc sequence, the substrate of the IS 1223 transposase. This system is particularly efficient in Lactobacillus casei , as more than 10,000 stable, random mutants were routinely obtained via electroporation.

Transposable element[SDV.SA]Life Sciences [q-bio]/Agricultural sciencesTn3 transposonLactobacillus casei[SDV]Life Sciences [q-bio]TransposasesVECTORGenetics and Molecular BiologyDELBRUECKII SUBSP BULGARICUSApplied Microbiology and BiotechnologyBACILLUS-SUBTILIS03 medical and health sciencesPlasmidEscherichia coliSTREPTOCOCCUS[ SDV.SA ] Life Sciences [q-bio]/Agricultural sciencesTransposaseDNA Primers030304 developmental biologyGenetics0303 health sciencesEcologybiologyRandom030306 microbiologyINSERTION SEQUENCESElectroporationbiology.organism_classificationSleeping Beauty transposon systemMolecular biologyGENETRANSFORMATIONGROUP-BBlotting SouthernLacticaseibacillus caseiLactobacillusMutagenesisDNA Transposable ElementsbacteriaTransposon mutagenesisELECTROPORATIONPLASMIDPlasmidsFood ScienceBiotechnology
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Fermentation Products of Commensal Bacteria Alter Enterocyte Lipid Metabolism

2020

eferred to byJia Wen, John F. RawlsFeeling the Burn: Intestinal Epithelial Cells Modify Their Lipid Metabolism in Response to Bacterial Fermentation ProductsCell Host & Microbe, Volume 27, Issue 3, 11 March 2020, Pages 314-316; International audience; Despite the recognized capacity of the gut microbiota to regulate intestinal lipid metabolism, the role of specific commensal species remains undefined. Here, we aimed to understand the bacterial effectors and molecular mechanisms by which Lactobacillus paracasei and Escherichia coli regulate lipid metabolism in enterocytes. We show that L-lactate produced by L. paracasei inhibits chylomicron secretion from enterocytes and promotes lipid stora…

[SDV.IMM] Life Sciences [q-bio]/ImmunologyEnterocyteBiologyGut floraMicrobiologyCell Linelipids03 medical and health sciences0302 clinical medicineLipid oxidationVirologyChylomicronsmedicineEscherichia coliAnimalsSecretionSymbiosis030304 developmental biology0303 health sciencescommensal bacteriaAMPKLipid metabolismMetabolismLacticaseibacillus paracaseiL-lactatebiology.organism_classificationLipid MetabolismCell biologyIntestinesMice Inbred C57BLmedicine.anatomical_structureEnterocytesFermentation[SDV.IMM]Life Sciences [q-bio]/ImmunologyParasitologyFemalelipids (amino acids peptides and proteins)acetatesmall intestine030217 neurology & neurosurgeryChylomicron
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