0000000000933211

AUTHOR

Donato Cascio

showing 48 related works from this author

HEp-2 Intensity Classification based on Deep Fine-tuning

2020

Fine-tuningOpticsMaterials sciencebusiness.industrybusinessIntensity (heat transfer)Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies
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Automatic Segmentation of HEp-2 Cells Based on Active Contours Model

2018

In the past years, a great deal of effort was put into research regarding Indirect Immunofluorescence techniques with the aim of development of CAD systems. In this work a method for segmenting HEp-2 cells in IIF images is presented. Such task is one of the most challenging of automated IIF analysis, because the segmentation algorithm has to cope with a large heterogeneity of shapes and textures. In order to address this problem, numerous techniques and their combinations were evaluated, in a process aimed at maximizing the figure of merit. The proposed method, for a greater definition of cellular contours, uses the active contours in the last phase of the process. The initial conditions, c…

Active contour modelComputer sciencebusiness.industryHEp-2 cellComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONProcess (computing)Pattern recognitionEllipseDice indexSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Hough transformlaw.inventionRandomized Hough transformHough transformlawPosition (vector)Convergence (routing)SegmentationArtificial intelligencebusinessActive contours modelCells segmentationIIF imagesProceedings of the 2018 3rd International Conference on Biomedical Imaging, Signal Processing
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An Automatic HEp-2 Specimen Analysis System Based on an Active Contours Model and an SVM Classification

2019

The antinuclear antibody (ANA) test is widely used for screening, diagnosing, and monitoring of autoimmune diseases. The most common methods to determine ANA are indirect immunofluorescence (IIF), performed by human epithelial type 2 (HEp-2) cells, as substrate antigen. The evaluation of ANA consist an analysis of fluorescence intensity and staining patterns. This paper presents a complete and fully automatic system able to characterize IIF images. The fluorescence intensity classification was obtained by performing an image preprocessing phase and implementing a Support Vector Machines (SVM) classifier. The cells identification problem has been addressed by developing a flexible segmentati…

Computer scienceSVMKNN02 engineering and technologylcsh:TechnologyIIF imageHough transformlaw.inventionlcsh:Chemistry03 medical and health scienceslawClassifier (linguistics)0202 electrical engineering electronic engineering information engineeringPreprocessorGeneral Materials ScienceSegmentationcell segmentationlcsh:QH301-705.5InstrumentationIIF images030304 developmental biologyFluid Flow and Transfer Processes0303 health sciencesIndirect immunofluorescencelcsh:Tbusiness.industryProcess Chemistry and TechnologyGeneral EngineeringPattern recognitionSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)ROC curvelcsh:QC1-999Computer Science ApplicationsSupport vector machineParameter identification problemFluorescence intensityHough transformlcsh:Biology (General)lcsh:QD1-999lcsh:TA1-2040020201 artificial intelligence & image processingArtificial intelligencelcsh:Engineering (General). Civil engineering (General)businesslcsh:Physicsactive contours modelApplied Sciences
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Mammographic images segmentation based on chaotic map clustering algorithm

2013

Background: This work investigates the applicability of a novel clustering approach to the segmentation of mammographic digital images. The chaotic map clustering algorithm is used to group together similar subsets of image pixels resulting in a medically meaningful partition of the mammography. Methods: The image is divided into pixels subsets characterized by a set of conveniently chosen features and each of the corresponding points in the feature space is associated to a map. A mutual coupling strength between the maps depending on the associated distance between feature space points is subsequently introduced. On the system of maps, the simulated evolution through chaotic dynamics leads…

Cooperative behaviorClustering algorithmsComputer scienceFeature vectorCorrelation clusteringPhysics::Medical PhysicsMass lesionsMicrocalcificationsImage processingBreast NeoplasmsDigital imageSegmentationBreast cancerImage Processing Computer-AssistedCluster AnalysisHumansRadiology Nuclear Medicine and imagingSegmentationComputer visionCluster analysisFeaturesPixelChaotic maps Clustering algorithms Cooperative behavior Segmentation Mammography Features Mass lesions Microcalcifications Breast cancerbusiness.industrySegmentation-based object categorizationCalcinosisSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Radiographic Image EnhancementChaotic mapsRadiology Nuclear Medicine and imagingComputer Science::Computer Vision and Pattern RecognitionFemaleArtificial intelligencebusinessAlgorithmsMammographyResearch Article
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Deep CNN for IIF Images Classification in Autoimmune Diagnostics

2019

The diagnosis and monitoring of autoimmune diseases are very important problem in medicine. The most used test for this purpose is the antinuclear antibody (ANA) test. An indirect immunofluorescence (IIF) test performed by Human Epithelial type 2 (HEp-2) cells as substrate antigen is the most common methods to determine ANA. In this paper we present an automatic HEp-2 specimen system based on a convolutional neural network method able to classify IIF images. The system consists of a module for features extraction based on a pre-trained AlexNet network and a classification phase for the cell-pattern association using six support vector machines and a k-nearest neighbors classifier. The class…

Computer science02 engineering and technologyConvolutional neural networklcsh:TechnologyIIF imageAlexNetlcsh:Chemistry03 medical and health sciencesconvolutional neural networks (CNNs)Autoimmune diseaseClassifier (linguistics)0202 electrical engineering electronic engineering information engineeringGeneral Materials Scienceautoimmune diseasesInstrumentationlcsh:QH301-705.5030304 developmental biologyIIF imagesFluid Flow and Transfer Processes0303 health sciencesDeep cnnIndirect immunofluorescenceaccuracybusiness.industrylcsh:TProcess Chemistry and Technologyk-nearest neighbors (KNN)General EngineeringPattern recognitionIIfClass (biology)lcsh:QC1-999Computer Science ApplicationsSupport vector machinelcsh:Biology (General)lcsh:QD1-999lcsh:TA1-2040System parameters020201 artificial intelligence & image processingsupport vector machine (SVM)Artificial intelligencebusinesslcsh:Engineering (General). Civil engineering (General)lcsh:PhysicsApplied Sciences
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A maChine and deep Learning Approach to predict pulmoNary hyperteNsIon in newbornS with congenital diaphragmatic Hernia (CLANNISH): Protocol for a re…

2021

Introduction Outcome predictions of patients with congenital diaphragmatic hernia (CDH) still have some limitations in the prenatal estimate of postnatal pulmonary hypertension (PH). We propose applying Machine Learning (ML), and Deep Learning (DL) approaches to fetuses and newborns with CDH to develop forecasting models in prenatal epoch, based on the integrated analysis of clinical data, to provide neonatal PH as the first outcome and, possibly: favorable response to fetal endoscopic tracheal occlusion (FETO), need for Extracorporeal Membrane Oxygenation (ECMO), survival to ECMO, and death. Moreover, we plan to produce a (semi)automatic fetus lung segmentation system in Magnetic Resonanc…

Pediatricsmedicine.medical_treatmentretrospective studyDiagnostic RadiologyCohort StudiesStudy ProtocolMathematical and Statistical TechniquesPregnancyMedicine and Health SciencesLung volumesMultidisciplinarymedicine.diagnostic_testRadiology and ImagingStatisticsQRSoftware EngineeringMagnetic Resonance ImagingPulmonary Imagingmachine learningObstetric ProceduresPhysical SciencesEngineering and TechnologyMedicineFemaleCohort studyComputer and Information Sciencesmedicine.medical_specialtyImaging TechniquesHypertension PulmonaryScienceSurgical and Invasive Medical ProceduresResearch and Analysis MethodsPulmonary hypertensionComputer SoftwareDiagnostic MedicineArtificial IntelligenceCongenital Diaphragmatic Hernia Pulmonary Ipertension Deep Learning protocolmedicineExtracorporeal membrane oxygenationHumansHerniaStatistical MethodsRetrospective StudiesFetal surgerybusiness.industrydiaphragmatic herniasegmentationInfant NewbornBiology and Life SciencesNeonatesCongenital diaphragmatic herniadeep learningRetrospective cohort studyMagnetic resonance imagingmedicine.diseaseSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Hernias Diaphragmatic CongenitalbusinessMathematicsDevelopmental BiologyForecasting
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Unsupervised clustering method for pattern recognition in IIF images

2017

Autoimmune diseases are a family of more than 80 chronic, and often disabling, illnesses that develop when underlying defects in the immune system lead the body to attack its own organs, tissues, and cells. Diagnosis of autoimmune pathologies is based on research and identification of antinuclear antibodies (ANA) through indirect immunofluorescence (IIF) method and is performed by analyzing patterns and fluorescence intensity. We propose here a method to automatically classify the centromere pattern based on the grouping of centromeres on the cells through a clustering K-means algorithm. The described method was tested on a public database (MIVIA). The results of the test showed an Accuracy…

business.industryPattern recognitionIIfBiologyIIF imageSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)K-meanIdentification (information)Fluorescence intensityStatistical classificationPattern recognitionPattern recognition (psychology)Autoimmune diseaseAutomatic segmentationArtificial intelligenceUnsupervised clusteringCluster analysisbusinessclustering
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A multi-process system for HEp-2 cells classification based on SVM

2016

An automatic system for pre-segmented IIF images analysis was developed.A non-standard pipeline for supervised image classification was adopted.The system uses a two-level pyramid to retain some spatial information.From each cell image 216 features are extracted.15 SVM classifiers one-against-one have been implemented. This study addresses the classification problem of the HEp-2 cells using indirect immunofluorescence (IIF) image analysis, which can indicate the presence of autoimmune diseases by finding antibodies in the patient serum. Recently, studies have shown that it is possible to identify the cell patterns using IIF image analysis and machine learning techniques. In this paper we de…

Computer scienceSVM02 engineering and technologyImmunofluorescencecomputer.software_genre030218 nuclear medicine & medical imagingImage (mathematics)03 medical and health sciences0302 clinical medicineArtificial IntelligencePyramid0202 electrical engineering electronic engineering information engineeringmedicinePyramid (image processing)Spatial analysisAccuracy1707Contextual image classificationmedicine.diagnostic_testFeatures reductionIndirect immunofluorescencePipeline (software)Class (biology)Settore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)StainingSupport vector machineHep-2 cells classificationSignal Processing020201 artificial intelligence & image processingComputer Vision and Pattern RecognitionData miningcomputerSoftware
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Deep Convolutional Neural Network for HEp-2 fluorescence intensity classification

2019

Indirect ImmunoFluorescence (IIF) assays are recommended as the gold standard method for detection of antinuclear antibodies (ANAs), which are of considerable importance in the diagnosis of autoimmune diseases. Fluorescence intensity analysis is very often complex, and depending on the capabilities of the operator, the association with incorrect classes is statistically easy. In this paper, we present a Convolutional Neural Network (CNN) system to classify positive/negative fluorescence intensity of HEp-2 IIF images, which is important for autoimmune diseases diagnosis. The method uses the best known pre-trained CNNs to extract features and a support vector machine (SVM) classifier for the …

Computer scienceSVM02 engineering and technologyConvolutional neural networklcsh:TechnologyIIF image030218 nuclear medicine & medical imaginglcsh:Chemistry03 medical and health sciences0302 clinical medicineClassifier (linguistics)Autoimmune disease0202 electrical engineering electronic engineering information engineeringGeneral Materials Scienceautoimmune diseasesReceiver operating characteristic (ROC) curveInstrumentationlcsh:QH301-705.5AccuracyIIF imagesFluid Flow and Transfer ProcessesIndirect immunofluorescencebusiness.industrylcsh:TProcess Chemistry and TechnologyGeneral EngineeringPattern recognitionIIfGold standard (test)Convolutional Neural Network (CNN)lcsh:QC1-999Computer Science ApplicationsIntensity (physics)Support vector machineFluorescence intensitylcsh:Biology (General)lcsh:QD1-999lcsh:TA1-2040020201 artificial intelligence & image processingArtificial intelligencebusinesslcsh:Engineering (General). Civil engineering (General)lcsh:Physics
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A Fuzzy Logic C-Means Clustering Algorithm to Enhance Microcalcifications Clusters in Digital Mammograms

2011

The detection of microcalcifications is a hard task, since they are quite small and often poorly contrasted against the background of images. The Computer Aided Detection (CAD) systems could be very useful for breast cancer control. In this paper, we report a method to enhance microcalcifications cluster in digital mammograms. A Fuzzy Logic clustering algorithm with a set of features is used for clustering microcalcifications. The method described was tested on simulated clusters of microcalcifications, so that the location of the cluster within the breast and the exact number of microcalcifications is known.

C-meanCOMPUTER-AIDED DETECTIONComputer scienceCADFuzzy logicSet (abstract data type)Cluster (physics)medicineMammographycancerComputer visionCLASSIFICATION.Cluster analysisbreastmedicine.diagnostic_testbusiness.industryPattern recognitionImage enhancementComputer aided detectionSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)microcalcificationComputingMethodologies_PATTERNRECOGNITIONbreast; cancer; microcalcifications; clustering; fuzzy logic; C-means; COMPUTER-AIDED DETECTION; CLASSIFICATION.Artificial intelligencefuzzy logicbusinessclustering
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A completely automated CAD system for mass detection in a large mammographic database

2006

Mass localization plays a crucial role in computer-aided detection (CAD) systems for the classification of suspicious regions in mammograms. In this article we present a completely automated classification system for the detection of masses in digitized mammographic images. The tool system we discuss consists in three processing levels: (a) Image segmentation for the localization of regions of interest (ROIs). This step relies on an iterative dynamical threshold algorithm able to select iso-intensity closed contours around gray level maxima of the mammogram. (b) ROI characterization by means of textural features computed from the gray tone spatial dependence matrix (GTSDM), containing secon…

Contextual image classificationPixelDatabasemedicine.diagnostic_testComputer scienceImage processingGeneral MedicineImage segmentationmedicine.diseasecomputer.software_genreBreast cancerImage textureComputer-aided diagnosismedicineMedical imagingMammographycomputerMedical Physics
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Computer-Assisted Classification Patterns in Autoimmune Diagnostics: The AIDA Project.

2016

International audience; Antinuclear antibodies (ANAs) are significant biomarkers in the diagnosis of autoimmune diseases in humans, done by mean of Indirect ImmunoFluorescence (IIF) method, and performed by analyzing patterns and fluorescence intensity. This paper introduces the AIDA Project (autoimmunity: diagnosis assisted by computer) developed in the framework of an Italy-Tunisia cross-border cooperation and its preliminary results. A database of interpreted IIF images is being collected through the exchange of images and double reporting and a Gold Standard database, containing around 1000 double reported images, has been settled. The Gold Standard database is used for optimization of …

Pathologymedicine.medical_specialtyTunisiaArticle SubjectAnti-nuclear antibody[SDV]Life Sciences [q-bio]lcsh:MedicineCAD02 engineering and technologyGeneral Biochemistry Genetics and Molecular Biology030218 nuclear medicine & medical imagingAutoimmune Diseases03 medical and health sciences0302 clinical medicine0202 electrical engineering electronic engineering information engineeringImage Processing Computer-AssistedMedicineHumansFluorescent Antibody Technique IndirectIndirect immunofluorescenceGeneral Immunology and Microbiologybusiness.industrylcsh:RIIfPattern recognitionGeneral MedicineGold standard (test)Computer aided detectionSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)3. Good healthFluorescence intensityItalyComputer-aided diagnosisAntibodies Antinuclear020201 artificial intelligence & image processingArtificial intelligencebusinessComputer Aided Diagnosis Immunofluorescence Pattern Classification IIF images Autoimmune diseases SVM ANN HEp-2Research ArticleBioMed research international
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A REST-based framework to support non-invasive and early coeliac disease diagnosis

2019

The health sector has traditionally been one of the early adopters of databases, from the most simple Electronic Health Record (formerly Computer-Based Patient Record) systems in use in general practice, hospitals and intensive care units to big data, multidata based systems used to support diagnosis and care decisions. In this paper we present a framework to support non-invasive and early diagnosis of coeliac disease. The proposed framework makes use of well-known technologies and techniques, both hardware and software, put together in a novel way. The main goals of our framework are: (1) providing users with a reliable and fast repository of a large amount of data; (2) to make such reposi…

0301 basic medicineDecision support systemData processingSIMPLE (military communications protocol)Settore INF/01 - Informaticabusiness.industryComputer scienceBig dataHealth care systemData scienceDatabase03 medical and health sciencesEarly adopter030104 developmental biology0302 clinical medicineSoftwareIntensive careRest (finance)030211 gastroenterology & hepatologybusinessCoeliac disease diagnosis supportHealth care systems
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Energy Recovery of Multiple Charge Sharing Events in Room Temperature Semiconductor Pixel Detectors

2021

Multiple coincidence events from charge-sharing and fluorescent cross-talk are typical drawbacks in room-temperature semiconductor pixel detectors. The mitigation of these distortions in the measured energy spectra, using charge-sharing discrimination (CSD) and charge-sharing addition (CSA) techniques, is always a trade-off between counting efficiency and energy resolution. The energy recovery of multiple coincidence events is still challenging due to the presence of charge losses after CSA. In this work, we will present original techniques able to correct charge losses after CSA even when multiple pixels are involved. Sub-millimeter cadmium–zinc–telluride (CdZnTe or CZT) pixel detectors we…

Physics::Instrumentation and DetectorsCZT pixel detectors030303 biophysicsTP1-1185Radiation01 natural sciencesBiochemistryCoincidenceCollimated lightArticleAnalytical ChemistryCharge sharingcharge-sharing correction03 medical and health sciencesOptics0103 physical sciencesElectrical and Electronic EngineeringInstrumentationPhysics0303 health sciencesCharge sharing; Charge-sharing correction; CZT pixel detectors; Semiconductor pixel detectorscharge sharingPixel010308 nuclear & particles physicsbusiness.industryChemical technologyCounting efficiencyDetectorsemiconductor pixel detectorsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Atomic and Molecular Physics and OpticsPhoton countingbusinessSensors
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A fourier-based algorithm for micro-calcification enhancement in mammographic images

2008

Breast cancer is the most widespread cancer in women in the world; it manifests mostly in two forms: microcalcifications and massive lesions. These two forms differ in density, size, shape and number. Consequently, there are two different kinds of mammographic CAD algorithms: those for microcalcifications detection, and those for massive lesions detection. The microcalcifications detection is a hard task, since they are quite small and often poorly contrasted against the background, especially in images affected by digitization noise. In a CAD system the ROI Hunter plays an important role, because missed microcalcifications at this level are definitely lost. For this reason, highlighting me…

medicine.diagnostic_testComputer scienceMicrocalcificationsCancerMicrocalcificationmedicine.diseaseFouriersymbols.namesakeFourier transformBreast cancerImage preprocessingBreast CancermedicineMedical imagingsymbolsMammographyHard taskCAD systemAlgorithmMammographicMammographic imageCalcification2008 IEEE Nuclear Science Symposium Conference Record
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Mammogram Segmentation by Contour Searching and Mass Lesions Classification with Neural Network

2006

The mammography is the most effective procedure for an early diagnosis of the breast cancer. In this paper, an algorithm for detecting masses in mammographic images will be presented. The database consists of 3762 digital images acquired in several hospitals belonging to the MAGIC-5 collaboration (Medical Applications on a Grid Infrastructure Connection). A reduction of the whole image's area under investigation is achieved through a segmentation process, by means of a ROI Hunter algorithm, without loss of meaningful information. In the following classification step, feature extraction plays a fundamental role: some features give geometrical information, other ones provide shape parameters.…

FIS/07 Fisica applicata (a beni culturali ambientali biologia e medicina)Nuclear and High Energy Physicsneural networkComputer sciencemammographyFeature extractionImage processingDigital imageBreast cancerComputer aided diagnosimedicineMammographySegmentationElectrical and Electronic Engineeringmedicine.diagnostic_testContextual image classificationbusiness.industryPattern recognitionImage segmentationneural networksimage processingNuclear Energy and EngineeringDigital imagingComputer-aided diagnosisImage analysiArtificial intelligencebusinessMammography
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A method to reduce the FP/imm number through CC and MLO views comparison in mammographic images

2008

In this paper we propose a method to reduce the FP/imm number through CC and MLO mammographic views comparison of the same patient. The proposed solution uses the symmetry properties of the breast to compute a geometric transformation that permits to represent the two images in comparable coordinates systems. Through this method, potential pathological ROIs of one of the projections are correlated with the ROIs in the second view. To show the effectiveness of the result we apply the method on a dataset composed of 112 couples of pathological images. Experiments shows that method enables a reduction by up to 700/0 of the FP/imm number detected after the classification step

Breast tissueData setbusiness.industryPathological imageGeometric transformationPattern recognitionSymmetry propertiesReduction (complexity)CorrelationMedical imagingMedicineArtificial intelligenceNuclear medicinebusinessGeometric transformationImage resolutionTransformation geometryMammographicMammographic image2008 IEEE Nuclear Science Symposium Conference Record
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Computer assisted diagnosis (CAD) in mammography. Comparison of diagnostic accuracy of a new algorithm (Cyclopus(R), Medicad) with two commercial sys…

2008

The study compares the diagnostic accuracy (correct identification of cancer) of a new computer-assisted diagnosis (CAD) system (Cyclopus) with two other commercial systems (R2 and CADx). Cyclopus was tested on a set of 120 mammograms on which the two compared commercial systems had been previously tested. The set consisted of mammograms reported as negative, preceding 31 interval cancers reviewed as screening error or minimal sign, and of 89 verified negative controls randomly selected from the same screening database. Cyclopus sensitivity was 74.1% (R2=54.8%; CADx=41.9%) and was higher for interval cancers reviewed as screening error (90.9%; R2=54.5%; CADx=81.8%) compared with those revie…

Settore ING-INF/05 - Sistemi Di Elaborazione Delle Informazionimedicine.medical_specialtymedicine.diagnostic_testbusiness.industryBreast carcinomaSettore FIS/01 - Fisica SperimentaleCADDiagnostic accuracyBreast NeoplasmsGeneral MedicineSensitivity and SpecificitySettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Predictive Value of TestsmedicineComputer-assisted diagnosiMammographyHumansRadiology Nuclear Medicine and imagingMedical physicsFemaleRadiologyDiagnosis Computer-AssistedbusinessAlgorithmsMammography
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Room-Temperature X-ray response of cadmium-zinc-Telluride pixel detectors grown by the vertical Bridgman technique

2020

In this work, the spectroscopic performances of new cadmium–zinc–telluride (CZT) pixel detectors recently developed at IMEM-CNR of Parma (Italy) are presented. Sub-millimetre arrays with pixel pitch less than 500 µm, based on boron oxide encapsulated vertical Bridgman grown CZT crystals, were fabricated. Excellent room-temperature performance characterizes the detectors even at high-bias-voltage operation (9000 V cm−1), with energy resolutions (FWHM) of 4% (0.9 keV), 1.7% (1 keV) and 1.3% (1.6 keV) at 22.1, 59.5 and 122.1 keV, respectively. Charge-sharing investigations were performed with both uncollimated and collimated synchrotron X-ray beams with particular attention to the mitigation o…

Nuclear and High Energy PhysicsPhotonMaterials scienceCdZnTe pixel detectorDot pitchCollimated lightCharge sharinglaw.inventionspectroscopic X-ray imagingchemistry.chemical_compoundlawcharge losseInstrumentationRadiationcharge sharingbusiness.industrySettore FIS/01 - Fisica SperimentaleX-raySynchrotronSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Cadmium zinc tellurideFull width at half maximumCdZnTe pixel detectors; charge losses; charge sharing; spectroscopic X-ray imaging; vertical Bridgman technique; X-ray and gamma-ray detectorsX-ray and gamma-ray detectorschemistryOptoelectronicsvertical Bridgman techniquebusinessX-ray and gamma-ray detector
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Performance of Fine-Tuning Convolutional Neural Networks for HEp-2 Image Classification

2020

The search for anti-nucleus antibodies (ANA) represents a fundamental step in the diagnosis of autoimmune diseases. The test considered the gold standard for ANA research is indirect immunofluorescence (IIF). The best substrate for ANA detection is provided by Human Epithelial type 2 (HEp-2) cells. The first phase of HEp-2 type image analysis involves the classification of fluorescence intensity in the positive/negative classes. However, the analysis of IIF images is difficult to perform and particularly dependent on the experience of the immunologist. For this reason, the interest of the scientific community in finding relevant technological solutions to the problem has been high. Deep lea…

Fine-tuningComputer scienceautoimmune diseaseHEp-202 engineering and technologylcsh:TechnologyConvolutional neural network030218 nuclear medicine & medical imagingImage (mathematics)lcsh:Chemistry03 medical and health sciences0302 clinical medicine0202 electrical engineering electronic engineering information engineeringautoimmune diseasesGeneral Materials Sciencelcsh:QH301-705.5InstrumentationFluid Flow and Transfer ProcessesContextual image classificationReceiver operating characteristiclcsh:Tbusiness.industryProcess Chemistry and TechnologyDeep learningGeneral EngineeringCNNsdeep learningPattern recognitionGold standard (test)lcsh:QC1-999Settore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)IIF testComputer Science Applicationslcsh:Biology (General)lcsh:QD1-999lcsh:TA1-2040Feature (computer vision)020201 artificial intelligence & image processingArtificial intelligencelcsh:Engineering (General). Civil engineering (General)businessfine-tuninglcsh:PhysicsCNNfeatures extractorApplied Sciences
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Automated approach for indirect immunofluorescence images classification based on unsupervised clustering method

2018

Autoimmune diseases (ADs) are a collection of many complex disorders of unknown aetiology resulting in immune responses to self-antigens and are thought to result from interactions between genetic and environmental factors. ADs collectively are amongst the most prevalent diseases in the U.S., affecting at least 7% of the population. The diagnosis of ADs is very complex, the standard screening methods provides seeking and recognizing of Antinuclear Antibodies (ANA) by Indirect ImmunoFluorescence (IIF) based on HEp-2 cells. In this paper an automatic system able to identify and classify the Centromere pattern is presented. The method is based on the grouping of centromeres present on the cell…

medical disorderComputer sciencePopulationFeature extraction02 engineering and technologybiomedical optical imagingmedical image processing030218 nuclear medicine & medical imaging03 medical and health sciences0302 clinical medicineImage textureblood0202 electrical engineering electronic engineering information engineeringSegmentationimage texturecellular biophysicsCluster analysiseducationimage segmentationdiseaseeducation.field_of_studyIndirect immunofluorescenceContextual image classificationbusiness.industryfeature extractionPattern recognitionImage segmentationSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)020201 artificial intelligence & image processingfluorescenceComputer Vision and Pattern RecognitionArtificial intelligencebusinessSoftwareimage classificationIET Computer Vision
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Recognizing the Emergent and Submerged Iceberg of the Celiac Disease: ITAMA Project-Global Strategy Protocol.

2022

Coeliac disease (CD) is frequently underdiagnosed with a consequent heavy burden in terms of morbidity and health care costs. Diagnosis of CD is based on the evaluation of symptoms and anti-transglutaminase antibodies IgA (TGA-IgA) levels, with values above a tenfold increase being the basis of the biopsy-free diagnostic approach suggested by present guidelines. This study showcased the largest screening project for CD carried out to date in school children (n=20,000) aimed at assessing the diagnostic accuracy of minimally invasive finger prick point-of-care tests (POCT) which, combined with conventional celiac serology and the aid of an artificial intelligence-based system, may eliminate t…

Settore INF/01 - Informaticaintestinal biopsypoint-of-care testanti-transglutaminaseguidelinesnegative predictive valueartificial intelligenceESPGHANmucosal depositsPediatricscoeliac diseaseSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Pediatric reports
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Special Issue on Signal Processing and Machine Learning for Biomedical Data

2021

This Special Issue is focused on advanced techniques in signal processing, analysis, modelling, and classification, applied to a variety of medical diagnostic problems. Biomedical data play a fundamental role in many fields of research and clinical practice. Very often the complexity of these data and their large volume makes it necessary to develop advanced analysis techniques and systems. Furthermore, the introduction of new techniques and methodologies for diagnostic purposes, especially in the field of medical imaging, requires new signal processing and machine learning methods. The recent progress in machine learning techniques, and in particular deep learning, revolutionized various f…

Signal processingMedical diagnosticComputer science02 engineering and technologyMachine learningcomputer.software_genrelcsh:Technologylcsh:ChemistryBiomedical data0202 electrical engineering electronic engineering information engineeringGeneral Materials Sciencebiomedical dataInstrumentationlcsh:QH301-705.5Fluid Flow and Transfer ProcessesSignal processingbusiness.industrylcsh:TProcess Chemistry and TechnologyGeneral Engineering021001 nanoscience & nanotechnologylcsh:QC1-999Computer Science ApplicationsVariety (cybernetics)machine learningn/alcsh:Biology (General)lcsh:QD1-999lcsh:TA1-2040020201 artificial intelligence & image processingArtificial intelligence0210 nano-technologybusinesslcsh:Engineering (General). Civil engineering (General)computerlcsh:Physicsdeep learnigApplied Sciences
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MAGIC-5: an Italian mammographic database of digitised images for research

2008

The implementation of a database of digitised mammograms is discussed. The digitised images were collected beginning in 1999 by a community of physicists in collaboration with radiologists in several Italian hospitals as a first step in developing and implementing a computer-aided detection (CAD) system. All 3,369 mammograms were collected from 967 patients and classified according to lesion type and morphology, breast tissue and pathology type. A dedicated graphical user interface was developed to visualise and process mammograms to support the medical diagnosis directly on a high-resolution screen. The database has been the starting point for developing other medical imaging applications,…

AdultLesion typeDatabases Factualmammographic databaseBreast NeoplasmsCADcomputer.software_genreSensitivity and SpecificityDatabaseMedical imagingHumansMedicineMammographyRadiology Nuclear Medicine and imagingGridMedical image processingMedical diagnosisAgedRetrospective StudiesGraphical user interfacecomputer assisted detectionDatabasePoint (typography)medicine.diagnostic_testbusiness.industryMagic (programming)General MedicineMiddle Agedimage processingRadiographic Image EnhancementItalyRadiographic Image Interpretation Computer-AssistedFemaleTomography X-Ray Computedbusinessdatabase; mammography; medical image processing; gridcomputerMammographyLa radiologia medica
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Window-Based Energy Selecting X-ray Imaging and Charge Sharing in Cadmium Zinc Telluride Linear Array Detectors for Contaminant Detection

2023

The spectroscopic and imaging performance of energy-resolved photon counting detectors, based on new sub-millimetre boron oxide encapsulated vertical Bridgman cadmium zinc telluride linear arrays, are presented in this work. The activities are in the framework of the AVATAR X project, planning the development of X-ray scanners for contaminant detection in food industry. The detectors, characterized by high spatial (250 µm) and energy (<3 keV) resolution, allow spectral X-ray imaging with interesting image quality improvements. The effects of charge sharing and energy-resolved techniques on contrast-to-noise ratio (CNR) enhancements are investigated. The benefits of a new energy-resolved …

energy-resolved X-ray imagingcharge sharingsemiconductor pixel detectorsX-ray detectorsElectrical and Electronic EngineeringCZT detectors; charge sharing; semiconductor pixel detectors; X-ray detectors; energy-resolved X-ray imaging; contaminant detectionBiochemistryInstrumentationAtomic and Molecular Physics and Opticscontaminant detectionSettore FIS/03 - Fisica Della MateriaAnalytical ChemistryCZT detectors
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A Microcalcification Detection System in Mammograms based on ANN Clustering

2018

Breast cancer is one of the leading causes to women mortality in the world. Clustered microcalcifications (MCs) in mammograms can be an important early sign of breast cancer, the detection is important to prevent and treat the disease. In this work, we present a novel method for the detection of MCs in mammograms which consists of regions of Interest (ROIs) segmentation, based on a spatial filter that allows the detection of small and large microcalcifications, clustering and classification of MCs by Artificial Neural Network. The system has been tested on a public dataset of digital images and compared with previous approaches. The results demonstrate that the proposed approach could achie…

Computer sciencemammography02 engineering and technology030218 nuclear medicine & medical imaging03 medical and health sciencesDigital image0302 clinical medicineBreast cancer0202 electrical engineering electronic engineering information engineeringmedicineSegmentationSensitivity (control systems)Cluster analysisBreast canceimage segmentationArtificial neural networkbusiness.industryPattern recognitionmedicine.diseaseCad systemROC curveSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)020201 artificial intelligence & image processingArtificial intelligenceMicrocalcificationmedicine.symptombusinessANNclustering
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A Wavelet approach to extract main features from indirect immunofluorescence images

2019

A number of previous studies have shown that IIF image analysis requires complex and sometimes heterogeneous and diversified methods. Robust solutions can be proposed but they need to orchestrate several methods from low-level analysis up to more complex neural networks or SVM for data classification. The contribution intends to highlight the versatility of Wavelet Transform (WT) and their use in various levels of analysis for the classification of IIF images in order to develop a system capable of performing: image enhancement, ROI segmentation and object classification. Therefore, WT was adopted in the de-noise section, segmentation and classification. This analysis allows frequencies cha…

Computer scienceData classificationWavelet Transform02 engineering and technologyPattern Recognition030218 nuclear medicine & medical imaging03 medical and health sciencesSegmentation0302 clinical medicineWaveletRobustness (computer science)IIF dataset0202 electrical engineering electronic engineering information engineeringSegmentationMedical diagnosisSettore INF/01 - InformaticaArtificial neural networkbusiness.industryDenoiseWavelet transformPattern recognitionClassificationSupport vector machine020201 artificial intelligence & image processingArtificial intelligencebusinessProceedings of the 20th International Conference on Computer Systems and Technologies
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Sedimentation of halloysite nanotubes from different deposits in aqueous media at variable ionic strengths

2019

Abstract Halloysite clay is a natural nanomaterial that is attracting a growing interest in colloidal science. The halloysite aqueous dispersion stability is a key aspect for the configuration of a purification protocol as well as to establish the durability of a formulation. A physico-chemical study demonstrated the role of ionic strength and nanotube characteristic sizes on the sedimentation behavior. We highlighted the importance of the electrostatic repulsions exercised between the particles in the settling process. A protocol for image analysis has been proposed to provide robust information from time resolved optical images on the suspensions. In conclusion, we managed to correlate mi…

NanotubeMaterials scienceSedimentation (water treatment)Ionic bondingHalloysite02 engineering and technologyengineering.material010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesHalloysite0104 chemical sciencesNanomaterialsDiffusionColloidColloid and Surface ChemistryChemical engineeringSettlingIonic strengthengineeringImage analysiSedimentationζ potential0210 nano-technologyColloids and Surfaces A: Physicochemical and Engineering Aspects
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A CAD system for nodule detection in low-dose lung CTs based on region growing and a new active contour model

2007

A computer-aided detection (CAD) system for the selection of lung nodules in computer tomography (CT) images is presented. The system is based on region growing (RG) algorithms and a new active contour model (ACM), implementing a local convex hull, able to draw the correct contour of the lung parenchyma and to include the pleural nodules. The CAD consists of three steps: (1) the lung parenchymal volume is segmented by means of a RG algorithm; the pleural nodules are included through the new ACM technique; (2) a RG algorithm is iteratively applied to the previously segmented volume in order to detect the candidate nodules; (3) a double-threshold cut and a neural network are applied to reduce…

medicine.medical_specialtyLung NeoplasmsRadiation DosageModels BiologicalEdge detectionImage processingMedical imagingmedicineHumansDiagnosis Computer-AssistedComputed radiographycomputer-aided diagnosis (CAD)Lungimage segmentationComputed tomographyActive contour modelImage segmentationbusiness.industrycomputed tomographyGeneral MedicineImage segmentationComputer-aided diagnosis (CAD)image processingROC CurveRegion growingComputer-aided diagnosisRadiologyTomographyNeural Networks Computercomputer-aided diagnosis (CAD)image processingcomputed tomographyimage segmentationNuclear medicinebusinessTomography X-Ray ComputedAlgorithms
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Computer-aided diagnosis in digital mammography: comparison of two commercial systems

2014

Aim: Within this work, a comparative analysis of two commercial computer-aided detection or diagnosis (CAD) systems, CyclopusCAD® mammo (v. 6.0) produced by CyclopusCAD Ltd (Palermo, Italy) and SecondLook® (v. 6.1C) produced by iCAD Inc. (OH, USA) is performed by evaluating the results of both systems application on an unique set of mammographic digital images routinely acquired in a hospital structure. Materials & methods: The two CAD systems have been separately applied on a sample set of 126 mammographic digital cases, having been independently diagnosed by two senior radiologists. According to the human diagnosis, the cases in the sample reference set are divided into 61 negatives and 6…

Pathologymedicine.medical_specialtyDigital mammographyRadiological and Ultrasound Technologymedicine.diagnostic_testbusiness.industryCad systemSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Digital imageComputer-aided diagnosisBreast cancer clusters computer-assisted diagnosis FFDM FROC curve mammografy mass lesions microcalcifications performancemedicineMammographyRadiology Nuclear Medicine and imagingRadiologybusiness
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Incomplete Charge Collection at Inter-Pixel Gap in Low- and High-Flux Cadmium Zinc Telluride Pixel Detectors.

2022

The success of cadmium zinc telluride (CZT) detectors in room-temperature spectroscopic X-ray imaging is now widely accepted. The most common CZT detectors are characterized by enhanced-charge transport properties of electrons, with mobility-lifetime products μeτe > 10−2 cm2/V and μhτh > 10−5 cm2/V. These materials, typically termed low-flux LF-CZT, are successfully used for thick electron-sensing detectors and in low-flux conditions. Recently, new CZT materials with hole mobility-lifetime product enhancements (μhτh > 10−4 cm2/V and μeτe > 10−3 cm2/V) have been fabricated for high-flux measurements (high-flux HF-CZT detectors).…

Charge-sharing correctionPhotonsPhysics::Instrumentation and DetectorsX-RaysSettore FIS/01 - Fisica SperimentaleAstrophysics::Instrumentation and Methods for AstrophysicsIncomplete charge collectionBiochemistrySemiconductor pixel detectorsAtomic and Molecular Physics and OpticsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)CZT detectors; charge sharing; incomplete charge collection; charge-sharing correction; semiconductor pixel detectorsAnalytical ChemistryZincCadmium CompoundsElectrical and Electronic EngineeringCharge sharingTelluriumInstrumentationCZT detectorsCadmiumSensors (Basel, Switzerland)
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Fuzzy technique for microcalcifications clustering in digital mammograms

2012

Abstract Background Mammography has established itself as the most efficient technique for the identification of the pathological breast lesions. Among the various types of lesions, microcalcifications are the most difficult to identify since they are quite small (0.1-1.0 mm) and often poorly contrasted against an images background. Within this context, the Computer Aided Detection (CAD) systems could turn out to be very useful in breast cancer control. Methods In this paper we present a potentially powerful microcalcifications cluster enhancement method applicable to digital mammograms. The segmentation phase employs a form filter, obtained from LoG filter, to overcome the dependence from …

Databases FactualMicrocalcificationsBreast NeoplasmsContext (language use)CADcomputer.software_genreSensitivity and SpecificityFuzzy logicClusteringBreast cancerSegmentationBreast cancerC-meansImage Processing Computer-AssistedmedicineCluster AnalysisHumansMammographyRadiology Nuclear Medicine and imagingSegmentationCluster analysisSpatial filtersmedicine.diagnostic_testMultimediabusiness.industryCalcinosisPattern recognitionmedicine.diseaseSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Computer aided detectionFuzzy logicRadiology Nuclear Medicine and imagingFemaleArtificial intelligencebusinesscomputerAlgorithmsMammographyResearch ArticleBreast cancer Microcalcifications Spatial filters Clustering Fuzzy logic C-means Mammography SegmentationBMC Medical Imaging
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Comparative Study of Human and Automated Screening for Antinuclear Antibodies by Immunofluorescence on HEp-2 Cells

2015

Background : Several automated systems had been developed in order to reduce inter-observer variability in indirect immunofluorescence (IIF) interpretation. We aimed to evaluate the performance of a processing system in antinuclear antibodies (ANA) screening on HEp-2 cells. Patients and Methods : This study included 64 ANA-positive sera and 107 ANA-negative sera that underwent IIF on two commercial kits of HEp-2 cells (BioSystems® and Euroimmun®). IIF results were compared with a novel automated interpretation system, the “ Cyclopus CADImmuno®” (CAD). Results : All ANA-positive sera images were recognized as positive by CAD (sensitivity = 100%), while 17 (15.9%) of the ANA-negative sera ima…

Statistics and ProbabilityPathologymedicine.medical_specialtyIndirect immunofluorescenceAnti-nuclear antibodymedicine.diagnostic_testbusiness.industryConcordanceHealth InformaticsIIfImmunofluorescenceHealth Professions (miscellaneous)Settore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Continuous integrationPattern identificationAutoantibodies HEp-2 Immunofluorescence autoimmune diseases automated screening standardization.Health Information ManagementMedicineFine speckledbusinessInternational Journal of Statistics in Medical Research
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Automatic detection of lung nodules in CT datasets based on stable 3D mass–spring models

2012

We propose a computer-aided detection (CAD) system which can detect small-sized (from 3 mm) pulmonary nodules in spiral CT scans. A pulmonary nodule is a small lesion in the lungs, round-shaped (parenchymal nodule) or worm-shaped (juxtapleural nodule). Both kinds of lesions have a radio-density greater than lung parenchyma, thus appearing white on the images. Lung nodules might indicate a lung cancer and their early stage detection arguably improves the patient survival rate. CT is considered to be the most accurate imaging modality for nodule detection. However, the large amount of data per examination makes the full analysis difficult, leading to omission of nodules by the radiologist. We…

medicine.medical_specialtyLung NeoplasmsDatabases FactualHealth InformaticsCADModels BiologicalSensitivity and SpecificityImaging Three-DimensionalSegmentationLung nodulemedicineFalse positive paradoxSegmentation; Lung nodules; Active contours models;Computer tomography (CT); Mass–spring models; Spline curves; Image featuresHumansSegmentationDiagnosis Computer-AssistedStage (cooking)Lung cancerComputer tomography (CT)business.industryNodule (medicine)Image featuresSpline curvemedicine.diseaseSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Computer Science ApplicationsRegion growingMass–spring modelRadiologyTomographymedicine.symptombusinessTomography Spiral ComputedAlgorithmsActive contours model
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Preliminary results of the project A.I.D.A. (Auto Immunity: Diagnosis Assisted by computer)

2014

In this paper, are presented the preliminary results of the A.I.D.A. (Auto Immunity: Diagnosis Assisted by computer) project which is developed in the frame of the cross-border cooperation Italy-Tunisia. According to the main objectives of this project, a database of interpreted Indirect ImmunoFluorescence (IIF) images on HEp 2 cells is being collected thanks to the contribution of Italian and Tunisian experts involved in routine diagnosis of autoimmune diseases. Through exchanging images and double reporting; a Gold Standard database, containing around 1000 double reported IIF images with different patterns including negative tests, has been settled. This Gold Standard database has been us…

Autoimmunity ImmunoFluorescence Database Gold Standard CAD Patterns AccuracySettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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Classifier trained on dissimilarity representation of medical pattern: A comparative study.

2005

In this paper we investigate the feasibility of some typical techniques of pattern recognition for the classification of medical examples. The learning of the classifiers is not made in the traditional features space but it can be made by constructing decision rules on dissimilarity (distance) representations. In such a recognition process a new object is described by its distances to (a subset of) the training samples. Purpose of this work is the development of an automatic classification system which could be useful for radiologists in the investigation of breast cancer. The software has been designed in the framework of the MAGIC-5 collaboration. In the automatic classification system th…

breast cancerLinear Discriminant Analysiclassificationmammography
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Fast Fourier Transform Filtering for Bilateral Mammography Comparison

2010

Bilateral Asymmetry is one of the breast abnormalities that may indicate a cancer in early stage. The computer methods for the bilateral subtraction developed up to now show the problem of large false positives number because the alignment defects. On the other hand the computer methods using FFT approach suffer of a low S/N ratio to distinguish massive lesions from background. In this paper a method (FFT-RF-BMC) is presented to enhanche the bilateral asymmetry using a FFT to detect massive lesions through a Recursive Filtering.

Settore ING-INF/05 - Sistemi Di Elaborazione Delle InformazioniSettore FIS/01 - Fisica SperimentaleCAD mammography FFT Bilateral Mammography Comparison Computer ApplicationsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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CT imaging applied to capillary water absorption in sicilian sedimentary rocks used in cultural heritages

2006

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METODO AUTOMATICO PER LA RIVELAZIONE PRECOCE DI ZONE TUMORALI IN IMMAGINI BIOMEDICHE

2006

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METHOD FOR PROCESSING BIOMEDICAL IMAGES

2007

The present invention relates to a method for highlight and to diagnose regions of interest in biomedical radiographic images, useful in the context of a CAD tool processing operating as recond reader during the normal clinical and screening routine, so to reducing the costs of management of the "double reading" procedure.

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Dissimilarity Application for Medical Imaging Classification

2005

In the traditional way of learning from examples of objects the classifiers are built in a feature space. However, alternative ways can be found by constructing decision rules on dissimilarity (distance) representations. In such a recognition process a new object is described by its distances to (a subset of) die training samples. The use of the dissimilarities is especially of interest when features are difficult to obtain or when they have a little discriminative power. Purpose of this work is the development of an automatic classification system which could be useful for radiologists in the investigation of breast cancer. The software has been designed in the framework of the MAGIC-5 col…

Breast cancerDissimilarityComputer assisted diagnosiComputer aided diagnosimammographyCo-occurrence matrixMedical image processingimage segmentationNeural network
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Diagnosi assistita da computer (CAD) in mammografia. Confronto di accuratezza diagnostica di un nuovo algoritmo (Cyclopus®, Medicad) con due sistemi …

2009

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Metodo di Template Matching per l'Analisi di Immagini

2012

La presente invenzione si riferisce ad un metodo di Template Matching per l’analisi di immagini da ImmunoFluorescenza Indiretta (IFI) per la rivelazione e classificazione automatica di pattern autoanticorpali. L’invenzione qui presentata generalizza il metodo del Template Matching operando innovativamente il mapping del contenuto visuale dell’immagine con particolari funzioni discrete qui denominate “mappatori”; inoltre, utilizzando le informazioni provenienti dalla sovrapposizione dei vari mappatori con un metodo di confronto funzionale, realizza una funzione di correlazione originale. La metodologia descritta nel seguito presenta una flessibilità tale da renderla applicabile a qualsiasi p…

Template Matchingpattern recognitionImmunofluorescenza indirettabioimmaginiSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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METODO DI ELABORAZIONE DI IMMAGINI BIOMEDICHE

2006

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TAC applicata allo studio di rocce sedimentarie utilizzate nei Beni Culturali

2006

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Una tecnica di segmentazione per la rivelazione di patologie mammarie

2004

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Un sistema Automatico per il riconoscimento di lesion i massive in mammografia

2005

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COMPUTER ASSISTED DIAGNOSIS (CAD) IN MAMMOGRAPHY. COMPARISON OF DIAGNOSTIC ACCURACY OF A NEW ALGORITHM (CYCLOPUS®, MEDICAD) WITH TWO COMMERCIAL SYSTE…

2008

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