6533b831fe1ef96bd1298fe9

RESEARCH PRODUCT

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces

Tom CoenyePaul StoodleyGianfranco DonelliTalis JuhnaTalis JuhnaMaria Olívia PereiraAna Margarida SousaAntonio OliverAnália LourençoAnália LourençoHoward CeriRosário OliveiraDarla M. GoeresMark E. ShirtliffFilipa Alexandra Baltar Lobo CoelhoAndreia S. AzevedoHans-curt FlemmingSusana Patrícia LopesNuno F. Azevedo

subject

Microbiology (medical)Databases FactualStandardizationComputer sciencemedia_common.quotation_subjectControl (management)Microbial communitiesGuidelines as TopicDocumentationBioinformaticsArticleBasic medicine03 medical and health sciencesDocumentationData standardizationTerminology as Topic:Basic medicine [Medical and Health sciences]HumansImmunology and AllergyQuality (business)Data interchangeSet (psychology)030304 developmental biologyInterpretabilitymedia_common0303 health sciencesScience & TechnologyGeneral Immunology and Microbiology030306 microbiologyBiofilmResearchMachine-readable formatsComputational Biology:Medicina básica [Ciências médicas e da saúde]General MedicineData scienceMetadataIdentification (information)Infectious DiseasesVocabulary ControlledResearch DesignMedicina básicaBiofilmsSoftware

description

The minimum information about a biofilm experiment (MIABiE) initiative has arisen from the need to find an adequate and scientifically sound way to control the quality of the documentation accompanying the public deposition of biofilm-related data, particularly those obtained using high-throughput devices and techniques. Thereby, the MIABiE consortium has initiated the identification and organization of a set of modules containing the minimum information that needs to be reported to guarantee the interpretability and independent verification of experimental results and their integration with knowledge coming from other fields. MIABiE does not intend to propose specific standards on how biofilms experiments should be performed, because it is acknowledged that specific research questions require specific conditions which may deviate from any standardization. Instead, MIABiE presents guidelines about the data to be recorded and published in order for the procedure and results to be easily and unequivocally interpreted and reproduced. Overall, MIABiE opens up the discussion about a number of particular areas of interest and attempts to achieve a broad consensus about which biofilm data and metadata should be reported in scientific journals in a systematic, rigorous and understandable manner.

https://doi.org/10.1111/2049-632x.12146