6533b835fe1ef96bd129ec34

RESEARCH PRODUCT

Theoretical study of the interaction between sodium ion and a cyclopeptidic tubular structure.

Gianfranco La MannaFrancesco Ferrante

subject

Tubular aggregates alkaline ions DFTModels MolecularNanotubes PeptideNanotubeChemistrySodiumSodiumStackingGlycineMolecular Conformationchemistry.chemical_elementGeneral ChemistryInteraction energyMolecular physicsPeptides CyclicIonComputational MathematicsZigzagComputational chemistryLattice (order)ThermodynamicsComputer SimulationOligopeptides

description

DFT calculations have been carried out to describe the pathway of a sodium ion along the stacking direction of a tubular structure set up by five cyclopeptidic units, which can be considered a suitable model of a hollow tubular structure of indefinite length. A lattice of points inside the tubular structure is defined and the DFT interaction energy values with a sodium ion are obtained. The data allow predicting a zigzag path of the ion inside the hosting structure. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2007

10.1002/jcc.20677https://pubmed.ncbi.nlm.nih.gov/17450556