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RESEARCH PRODUCT

A Push-Pull Mechanism Helps Design Highly Competent G-Quadruplex-DNA Catalysts

Jun ZhouStephanie C. C. Van Der LubbeJean-louis MergnyMingpan ChengDehui QiuJiawei WangJielin ChenHuangxian JuDavid MonchaudCélia Fonseca Guerra

subject

[SDV.BIO]Life Sciences [q-bio]/BiotechnologyDNAzymeDeoxyribozyme010402 general chemistryG-quadruplex01 natural sciencesCatalysischemistry.chemical_compoundPush–pull mechanismG-quadruplex010405 organic chemistryChemistryMechanism (biology)Robustness (evolution)[CHIM.CATA] Chemical Sciences/CatalysisGeneral Chemistry[CHIM.CATA]Chemical Sciences/CatalysisCombinatorial chemistry0104 chemical sciences[SDV.BIO] Life Sciences [q-bio]/Biotechnology[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry[CHIM.THEO] Chemical Sciences/Theoretical and/or physical chemistryNucleic acidHeminDNAHeminElectron density

description

International audience; Massive efforts are currently being invested to improve the performance, versatility, and scope of applications of nucleic acid catalysts. G-quadruplex (G4)/hemin DNAzymes are of particular interest owing to their structural programmability and chemical robustness. However, optimized catalytic efficiency is still bottleneck and the activation mechanism is unclear. Herein, we have designed a series of parallel G4s with different proximal cytosine (dC) derivatives to fine-tune the hemin-binding pocket for G4-DNAzymes. Combining theoretical and experimental methods, we have assessed the dependence of catalytic enhancement on the electronic properties of proximal dCs and demonstrated how proximal dCs activate catalytic proficiency. These results provide interesting clues in recapitulating the push–pull mechanism as the basis of peroxidase activity and help to devise a new strategy to design highly competent DNA catalysts whose performances are of the same order as protease.

10.31635/ccschem.020.202000473https://hal.science/hal-02955772