Search results for " Reading"

showing 10 items of 463 documents

Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids.

2008

Abstract Background Sequences homologous to the gypsy retroelement from Drosophila melanogaster are widely distributed among drosophilids. The structure of gypsy includes an open reading frame resembling the retroviral gene env, which is responsible for the infectious properties of retroviruses. Results In this study we report molecular and phylogeny analysis of the complete env gene from ten species of the obscura group of the genus Drosophila and one species from the genus Scaptomyza. Conclusion The results indicate that in most cases env sequences could produce a functional Env protein and therefore maintain the infectious capability of gypsy in these species.

RetroelementsEvolutionvirusesGenome InsectEndogenous retrovirusSequence alignmentGenes InsectGenes envEvolution MolecularOpen Reading FramesViral Envelope ProteinsPhylogeneticsDrosophilidaeQH359-425AnimalsDrosophilidaeRNA MessengerDrosophila (subgenus)Cloning MolecularGeneEcology Evolution Behavior and SystematicsPhylogenyGeneticsLikelihood FunctionsbiologyModels GeneticReverse Transcriptase Polymerase Chain ReactionEndogenous RetrovirusesDNASequence Analysis DNAbiology.organism_classificationOpen reading frameProtein BiosynthesisDrosophila melanogasterSequence AlignmentResearch ArticleBMC evolutionary biology
researchProduct

The ATC1 gene encodes a cell wall-linked acid trehalase required for growth on trehalose in Candida albicans.

2004

After screening a Candida albicans genome data base, the product of an open reading frame (IPF 19760/CA2574) with 41% identity to Saccharomyces cerevisiae vacuolar acid trehalase (Ath1p) was identified and named Atc1p. The deduced amino acid sequence shows that Atc1p contains an N-terminal hydrophobic signal peptide and 20 potential sites for N-glycosylation. C. albicans homozygous mutants that lack acid trehalase activity were constructed by gene disruption at the two ATC chromosomal alleles. Analysis of these null mutants shows that Atc1p is localized in the cell wall and is required for growth on trehalose as a carbon source. An Atc1p endowed with acid trehalase activity was obtained by …

Saccharomyces cerevisiae ProteinsTime FactorsTranscription GeneticMutantBlotting WesternMolecular Sequence DataTrehalase activityBiologyBiochemistrychemistry.chemical_compoundOpen Reading FramesCell WallCandida albicansAmino Acid SequenceRNA MessengerTrehalaseTrehalaseCandida albicansMolecular BiologyPeptide sequenceAlleleschemistry.chemical_classificationCell-Free SystemModels GeneticSequence Homology Amino AcidReverse Transcriptase Polymerase Chain ReactionStructural geneHomozygoteNuclear ProteinsTrehaloseCell BiologyDNAbiology.organism_classificationPhosphoproteinsTrehaloseCarbonAmino acidProtein Structure TertiaryGlucosechemistryBiochemistryProtein BiosynthesisMutationElectrophoresis Polyacrylamide GelCell DivisionPlasmidsThe Journal of biological chemistry
researchProduct

A DNA region ofTorulaspora delbrueckii containing theHIS3 gene: sequence, gene order and evolution

2003

We cloned a genomic DNA fragment of the yeast Torulaspora delbrueckii by complementation of a Saccharomyces cerevisiae his3 mutant strain. DNA sequence analysis revealed that the fragment contained two complete ORFs, which share a high similarity with S. cerevisiae His3p and Mrp51p, respectively. The cloned TdHIS3 gene fully complemented the his3 mutation of S. cerevisiae, confirming that it encodes for the imidazoleglycerol-phosphate dehydrate of T. delbrueckii. Two additional ORFs, with a high homology to S. cerevisiae PET56 and DED1 genes, were mapped upstream and downstream from TdHIS3 and TdMRP51, respectively. This genetic organization is analogous to that previously found in Saccharo…

Saccharomyces cerevisiae ProteinsTranscription GeneticSequence analysisMolecular Sequence DataSaccharomyces cerevisiaeCell Cycle ProteinsBioengineeringBiologyApplied Microbiology and BiotechnologyBiochemistryHomology (biology)DEAD-box RNA HelicasesEvolution MolecularFungal ProteinsOpen Reading FramesTorulaspora delbrueckiiGeneticsAmino Acid SequenceCloning MolecularORFSDNA FungalGeneHydro-LyasesPhylogenyGeneticsBase SequenceMethyltransferasesbiology.organism_classificationMolecular biologygenomic DNASaccharomycetalesChromosomal regionSequence AlignmentRNA HelicasesBiotechnologyYeast
researchProduct

A genomic study of the inter-ORF distances in Saccharomyces cerevisiae.

2006

The genome of eukaryotic microbes is usually quite compacted. The yeast Saccharomyces cerevisiae is one of the best-known examples. Open reading frames (ORFs) occupy about 75% of the total DNA sequence. The existence of other, non-protein coding genes and other genetic elements leaves very little space for gene promoters and terminators. We have performed an in silico study of inter-ORF distances that shows that there is a minimum distance between two adjacent ORFs that depends on the relative orientation between them. Our analyses suggest that different kinds of promoters and terminators exist with regard to their length and ability to overlap each other. The experimental testing of some p…

Saccharomyces cerevisiaeBioengineeringSaccharomyces cerevisiaeApplied Microbiology and BiotechnologyBiochemistryGenomeDNA sequencingOpen Reading FramesTranscripció genèticaGeneticsORFSLeast-Squares AnalysisGeneGeneticsbiologyReverse Transcriptase Polymerase Chain ReactionPromoterRNA Fungalbiology.organism_classificationBlotting NorthernRandom Amplified Polymorphic DNA TechniqueOpen reading frameTerminator (genetics)Genome FungalBiotechnologyYeast (Chichester, England)
researchProduct

Estudio cuasiexperimental para el análisis del pensamiento crítico en secundaria

2018

Ante la preocupación por los bajos niveles de comprensión lectora del alumnado adolescente y la creciente influencia de modelos externos en sus procesos de construcción identitaria, el presente estudio propone una construcción más activa, reflexiva y autónoma para formar lectores críticos desde la educación literaria. Tras una aproximación a la noción de lectura crítica, la investigación se decanta por un comentario textual orientado al estímulo de dos manifestaciones básicas del pensamiento crítico, como actividad nuclear de una secuencia diseñada y puesta en práctica con un grupo de estudiantes de cuarto curso de Educación Secundaria Obligatoria. Utilizando un diseño cuasiexperimental se …

Secondary educationCritical perspectiveIdentity (social science)análisis literarioEducationCritical thinkingReading comprehensionCritical readingPedagogylcsh:LPsychologyControl (linguistics)Lectura críticaidentidadlcsh:EducationRevista Electrónica de Investigación Educativa
researchProduct

Citing as a sourcing practice: students’ citing self-selected online sources in their essays (Las citas como práctica del uso de las fuentes: las cit…

2020

This study examined upper secondary school students’ citations of self-selected online sources in their essays. Students (n = 140) conducted online inquiry about either effects of social media on people’s quality of life (SM) or allowance of genetic manipulation of organisms (GMO). Students, working either individually or in pairs, explored online sources with the help of a graphic organizer, after which they composed their essays. To capture the quality of citations identified in the essays, they were evaluated in terms of accuracy and richness of source features. Further, regression analysis was used to examine the effect of topic, grade level and work mode on the number and quality of ci…

Secondary level05 social sciences050301 educationsourcingonline readingwritingviittaaminencollaborationEducation050106 general psychology & cognitive sciencesDevelopmental and Educational Psychologyciting0501 psychology and cognitive sciencesSociologyyhteisöllinen oppimineninternetlukeminenKasvatustieteet - Educational sciences0503 educationHumanitieskirjoittaminenJournal for the Study of Education and Development
researchProduct

THE IMPACT OF FAMILY AND INDIVIDUAL FACTORS ON 4TH GRADE STUDENTS’ SELF-CONFIDENCE IN READING LITERACY: RESULTS FROM PIRLS 2016

2021

The self-confidence of a child and an adult is associated with performance and achievement results. It is well-studied, and the correlation has been proved that higher self-efficacy leads to higher achievements and performance, including better performance in reading literacy. It is also known that both a family and a home environment have a tremendous impact on the child’s development and academic performance. This article focuses on the 4 th graders and their family factor impact on the development of a child’s self-confidence and concepts related to self-confidence. The purpose of this article is to define concepts that are closely related to self-confidence and to identify family factor…

Self-efficacyHome environmentmedia_common.quotation_subjecteducationSelf-esteemPIRLS self-confidence self-efficacy self-esteem students’ reading literacySelf-confidenceReading literacyReading (process)Correlation analysisMathematics educationPsychologyResearch questionmedia_commonSOCIETY. INTEGRATION. EDUCATION. Proceedings of the International Scientific Conference
researchProduct

The sequencing of the complete genome of a Tomato black ring virus (TBRV) and of the RNA2 of three Grapevine chrome mosaic virus (GCMV) isolates from…

2014

The complete genome of a Tomato black ring virus isolate (TBRV-Mirs) (RNA1, 7,366 nt and RNA2, 4,640 nt) and the RNA2 sequences (4,437; 4,445; and 4,442 nts) of three Grapevine chrome mosaic virus isolates (GCMV-H6, -H15, and -H27) were determined. All RNAs contained a single open reading frame encoding polyproteins of 254 kDa (p1) and 149 kDa (p2) for TBRV-Mirs RNA1 and RNA2, respectively, and 146 kDa for GCMV RNA2. p1 of TBRV-Mirs showed the highest identity with TBRV-MJ (94 %), Beet ringspot virus (BRSV, 82 %), and Grapevine Anatolian ringspot virus (GARSV, 66 %), while p2 showed the highest identity with TBRV isolates MJ (89 %) and ED (85 %), followed by BRSV (65 %), GCMV (58 %), and GA…

Sequence analysisMolecular Sequence DataNepovirusGenome ViralBiologyDNA sequencingGrapevine chrome mosaic viruslaw.inventionOpen Reading FramesSolanum lycopersicumlawVirologyPlant virusGeneticsCluster AnalysisVitisGrapevine chrome mosaic virusMovement proteinLycopersicon esculentumMolecular BiologyPhylogenyRecombination analysisPolyproteinsRecombination GeneticSequence Homology Amino AcidSequence analysisTomato black ring virusGeneral MedicineSequence Analysis DNATomato black ring virusbiology.organism_classificationVirologyMolecular WeightGenBankRecombinant DNARNA ViralGrapevine
researchProduct

Improved acid tolerance of a recombinant strain of Escherichia coli expressing genes from the acidophilic bacterium Oenococcus oeni.

2001

Aims:Oenococcus oeni is a lactic acid bacterium used in wine fermentation. Two open reading frames (orfB and orfC) were identified in the upstream region of the hsp18 gene, encoding the small heat-shock protein Lo18. Expression of these genes in conditions of acid stress was studied in Escherichia coli. Methods and Results: Sequence analysis showed that orfB encodes a putative transcriptional regulator of the LysR family. The protein encoded by orfC shares homologies with multi-drug resistance systems. Heterologous expression of orfB, orfC and hsp18 genes in Escherichia coli significantly enhanced the viability of the host strain under acidic conditions. Conclusions: It was demonstrated tha…

Sequence analysisMolecular Sequence DataRestriction MappingDNA RecombinantGene Expressionmedicine.disease_causeApplied Microbiology and BiotechnologyMicrobiologyOpen Reading FramesBacterial ProteinsmedicineEscherichia coliAmino Acid SequenceEscherichia coliGeneHeat-Shock ProteinsOenococcus oeniGeneticsbiologyBase Sequencebiology.organism_classificationEnterobacteriaceaeAdaptation PhysiologicalGram-Positive CocciOpen reading frameGenes BacterialHeterologous expressionGenetic EngineeringAcidsOenococcusCell DivisionLeuconostocPlasmidsLetters in applied microbiology
researchProduct

Genetic organization of the mle locus and identification of a mleR-like gene from Leuconostoc oenos

1996

Characterization of the mle locus harboring the malolactic enzyme gene mleA and malate permease gene mleP from Leuconostoc oenos was completed in this study by mRNA analysis. Northern (RNA) blot experiments revealed a 2.6-kb transcript, suggesting an operon structure harboring mleA and mleP genes. Primer extension analysis showed that the mle operon has a single transcription start site located 17 nucleotides upstream of the ATG translation start site for the mleA gene. We found sequences, TTGACT and TATGAT (which are separated by 18 bp), that are closely related to the gram-positive and Escherichia coli consensus promoter sequences. Upstream of the mleA gene, an 894-bp open reading frame t…

Sequence analysisOperonMolecular Sequence DataLeuconostoc oenosMalatesLocus (genetics)BiologyApplied Microbiology and BiotechnologyOpen Reading FramesOperon[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid SequenceLactic AcidGenemalolactic enzymeGeneticsRegulation of gene expressionmalateBase SequenceEcologyLactococcus lactisNucleic acid sequenceChromosome MappingregulationBlotting Northernbiology.organism_classificationMolecular biologyOpen reading frameGenes BacterialLeuconostocResearch ArticleFood ScienceBiotechnologyApplied and Environmental Microbiology
researchProduct