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showing 10 items of 8047 documents

Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of…

2017

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, …

0106 biological sciences0301 basic medicineSpeciationlcsh:MedicineAnimal PhylogeneticsCharaciformes01 natural sciencesDatabase and Informatics MethodsRNA Ribosomal 16Slcsh:ScienceDNA extractionPhylogenyData ManagementMultidisciplinaryGeographyPhylogenetic treebiologyEukaryotaPhylogenetic AnalysisPhylogeneticsFreshwater FishPhylogeographyBiogeographyVertebratesCharaciformesSequence AnalysisMonogeneaResearch ArticleComputer and Information SciencesEvolutionary ProcessesBioinformaticsContext (language use)Topology010603 evolutionary biologyHost-Parasite InteractionsElectron Transport Complex IV03 medical and health sciencesExtraction techniquesPhylogeneticsGeneticsAnimalsEvolutionary SystematicsParasite EvolutionTaxonomyHomeodomain ProteinsEvolutionary BiologyPopulation BiologyHost (biology)lcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesDNASequence Analysis DNAbiology.organism_classificationDactylogyridaeResearch and analysis methodsPhylogeographyFish030104 developmental biologyPlatyhelminthsEarth Scienceslcsh:QParasitologyZoologySequence AlignmentPopulation GeneticsPLOS ONE
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Modelling nonlinear dynamics of Crassulacean acid metabolism productivity and water use for global predictions

2021

Crassulacean acid metabolism (CAM) crops are important agricultural commodities in water-limited environments across the globe, yet modeling of CAM productivity lacks the sophistication of widely used C3 and C4 crop models, in part due to the complex responses of the CAM cycle to environmental conditions. This work builds on recent advances in CAM modeling to provide a framework for estimating CAM biomass yield and water use efficiency from basic principles. These advances, which integrate the CAM circadian rhythm with established models of carbon fixation, stomatal conductance, and the soil-plant-atmosphere continuum, are coupled to models of light attenuation, plant respiration, and bioma…

0106 biological sciences0301 basic medicineStomatal conductanceOpuntia ficus-indicawater use efficiencyPhysiologyPlant ScienceAgricultural engineering01 natural sciencescarbon assimilation03 medical and health sciencesAgaveBiomassWater-use efficiencyPhotosynthesisProductivityTranspirationBiomass (ecology)OpuntiaWaterPlant TranspirationCarbonAgave tequilanaSettore AGR/03 - Arboricoltura Generale E Coltivazioni Arboree030104 developmental biologyNonlinear DynamicsCrassulacean acid metabolismbiomaCrassulacean acid metabolismEnvironmental scienceBiomass partitioningWater use010606 plant biology & botany
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Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants

2018

Abstract As part of the risk assessment (RA) requirements for genetically modified (GM) plants, according to Regulation (EU) No 503/2013 and the EFSA guidance on the RA of food and feed from GM plants (EFSA GMO Panel, 2011), applicants need to perform a molecular characterisation of the DNA sequences inserted in the GM plant genome. The European Commission has mandated EFSA to develop a technical note to the applicants on, and checking of, the quality of the methodology, analysis and reporting covering complete sequencing of the insert and flanking regions, insertion site analysis of the GM event, and generational stability and integrity. This Technical Note puts together requirements and r…

0106 biological sciences0301 basic medicineVeterinary (miscellaneous)[SDV]Life Sciences [q-bio]2405 Parasitologymolecularcharacterisationnext‐generation sequencingContext (language use)Plant ScienceComputational biologyGenetically modified cropsBiology01 natural sciencesMicrobiologyGenomeInsert (molecular biology)DNA sequencing03 medical and health sciencessymbols.namesake1110 Plant Sciencegenetically modified organismgenetic stabilityDNA sequencing1106 Food ScienceSanger sequencinggenetically modified organisms2404 Microbiologyrisk assessmentmolecular characterisation10079 Institute of Veterinary Pharmacology and ToxicologyGenetically modified organism3401 Veterinary (miscellaneous)Scientific Opinion030104 developmental biologyNGSsymbols570 Life sciences; biologyAnimal Science and ZoologyParasitologynext-generation sequencing1103 Animal Science and Zoology010606 plant biology & botanyFood ScienceVerification and validation
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Clone-Dependent Expression of Esca Disease Revealed by Leaf Metabolite Analysis

2019

International audience; Grapevine trutk diseases, especially Esca, are of major concern since they gradually alter vineyards worldwide and cause heavy economic losses. The expression of Esca disease symptoms depends on several factors, including the grapevine cultivar. In this context, a possible clone-dependent expression of the Esca disease was studied. Two clones of 'Chardonnay' grown in the same plot were compared according to their developmental and physiological traits, metabolome, and foliar symptom expression. Analysis of their leaf metabolome highlighted differences related to symptom expression. Interestingly, the content of a few specific metabolites exhibited opposite variations…

0106 biological sciences0301 basic medicine[SDV]Life Sciences [q-bio]EscaClone (cell biology)Context (language use)DiseasePlant ScienceBiologylcsh:Plant culture01 natural sciences03 medical and health sciencesMetabolomics[SDV.IDA]Life Sciences [q-bio]/Food engineeringMetabolomelcsh:SB1-1110Cultivargrapevine trunk diseasesComputingMilieux_MISCELLANEOUSOriginal Research2. Zero hungerclonefood and beveragesMetabolite analysismetabolomicsVitis vinifera;grapevine trunk diseases;clone;metabolomics;Esca;3D fluorescenceHorticulture030104 developmental biologyVitis viniferaShoot3D fluorescence[SDV.IB]Life Sciences [q-bio]/Bioengineering010606 plant biology & botany
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Pesticide-induced changes in personality depend on the urbanization level

2017

Globally increasing urbanization causes major anthropogenic changes in ecosystems, drastically altering phenotypes of organisms. Increased contamination is a well-known result of urbanization, and its effect on behaviour has been extensively studied. Yet, animal personality, consistent behavioural variation between individuals, has rarely been investigated in the context of anthropogenic contaminants. Changes in personalities may affect the viability of populations, and even alter community dynamics. We investigated the effects of exposure to a sublethal dose of the commonly used pesticide esfenvalerate on two personality traits, activity and boldness, and compared these effects between rep…

0106 biological sciences0301 basic medicinebiologyBoldnessEcologymedia_common.quotation_subjectContext (language use)Pesticidebiology.organism_classificationAffect (psychology)010603 evolutionary biology01 natural sciences03 medical and health sciences030104 developmental biologyDamselflyUrbanizationPersonalityAnimal Science and ZoologyEcosystemPsychologyEcology Evolution Behavior and Systematicsmedia_commonAnimal Behaviour
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Eco‐evolutionary dynamics driven by fishing : from single species models to dynamic evolution within complex food webs

2020

Evidence of contemporary evolution across ecological time scales stimulated research on the eco‐evolutionary dynamics of natural populations. Aquatic systems provide a good setting to study eco‐evolutionary dynamics owing to a wealth of long‐term monitoring data and the detected trends in fish life‐history traits across intensively harvested marine and freshwater systems. In the present study, we focus on modelling approaches to simulate eco‐evolutionary dynamics of fishes and their ecosystems. Firstly, we review the development of modelling from single‐species to multispecies approaches. Secondly, we advance the current state‐of‐the‐art methodology by implementing evolution of life‐history…

0106 biological sciences0301 basic medicineevoluutiobiologiaEvolutionFishingevoluutioContext (language use)Biology010603 evolutionary biology01 natural sciencesPredation03 medical and health sciencesGeneticsQH359-425life‐history evolutionEcosystemahven14. Life underwaterco‐evolutionravintoketjutEcology Evolution Behavior and SystematicsApex predatorTrophic levelaquatic ecosystemsNatural selectionEcologyFood webEurasian perchlake constanceecosystem dynamicsekosysteemit (ekologia)030104 developmental biologyEurasian Perchcommunity dynamicsfood webspredator‐prey dynamicsGeneral Agricultural and Biological SciencesReviews and Syntheses
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Is it interspecific information use or aggression between putative competitors that steers the selection of nest-site characteristics? A reply to Sla…

2018

0106 biological sciences0301 basic medicinelearningAggressionanimal behaviourZoologyInterspecific competitionCompetitor analysisinformation useBiology010603 evolutionary biology01 natural sciences03 medical and health sciences030104 developmental biologymedicineta1181Animal Science and ZoologyNest sitemedicine.symptomecologycompetitionEcology Evolution Behavior and SystematicsSelection (genetic algorithm)Journal of Avian Biology
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Ancient symbiosis confers desiccation resistance to stored grain pest beetles

2017

AbstractMicrobial symbionts of insects provide a range of ecological traits to their hosts that are beneficial in the context of biotic interactions. However, little is known about insect symbiont-mediated adaptation to the abiotic environment, e.g. temperature and humidity. Here we report on an ancient (~400 Mya) clade of intracellular, bacteriome-located Bacteroidetes symbionts that are associated withgrain and wood pest beetles of the phylogenetically distant families Silvanidae and Bostrichidae. In the saw-toothed grain beetle Oryzaephilus surinamensis, we demonstrate that the symbionts affect cuticle thickness, melanization and hydrocarbon profile, enhancing desiccation resistance and …

0106 biological sciences0301 basic medicinemedia_common.quotation_subjectOryzaephilus surinamensisContext (language use)Insect010603 evolutionary biology01 natural sciences03 medical and health sciencesBotanyGeneticsAnimalsDesiccationSymbiosisEcology Evolution Behavior and SystematicsPhylogenymedia_commonAbiotic componentbiologyEcologyHost Microbial InteractionsEcologyBacteroidetesfungifood and beveragesSilvanidaebiochemical phenomena metabolism and nutritionbiology.organism_classification030104 developmental biologyBostrichidaeWeevilsPEST analysisDesiccation
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The current and future state of animal coloration research

2017

Animal colour patterns are a model system for understanding evolution because they are unusually accessible for study and experimental manipulation. This is possible because their functions are readily identifiable. In this final paper of the symposium we provide a diagram of the processes affecting colour patterns and use this to summarize their functions and put the other papers in a broad context. This allows us to identify significant ‘holes’ in the field that only become obvious when we see the processes affecting colour patterns, and their interactions, as a whole. We make suggestions about new directions of research that will enhance our understanding of both the evolution of colour …

0106 biological sciences0301 basic medicinemedia_common.quotation_subjectZoologyColorModel systemContext (language use)Biology010603 evolutionary biology01 natural sciencesBasic Behavioral and Social ScienceMedical and Health SciencesGeneral Biochemistry Genetics and Molecular BiologyField (computer science)colour pattern functions03 medical and health sciencesSynthesisPerceptionBehavioral and Social ScienceAnimalsFunction (engineering)media_commonCognitive scienceEvolutionary Biologycolour pattern evolutionPigmentationAnimal colorationBiological SciencesInvertebratesanimal colour patterns030104 developmental biologyPhenotypeCamouflageVertebratesMimicryVisual PerceptionGeneral Agricultural and Biological Sciences
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Terpenoid bio-transformations and applications via cell/organ cultures: a systematic review.

2019

Structurally diverse natural products are valued for their targeted biological activity. The challenge of working with such metabolites is their low natural abundance and complex structure, often with multiple stereocenters, precludes large-scale or unsophisticated chemical synthesis. Since select plants contain the enzymatic machinery necessary to produce specialized compounds, tissue cultures can be used to achieve key transformations for large-scale chemical and/or pharmaceutical applications. In this context, plant tissue-culture bio-transformations have demonstrated great promise in the preparation of pharmaceutical products. This review describes the capacity of cultured plant cells t…

0106 biological sciences0303 health sciencesChemistryTerpenesfungiCell Culture TechniquesContext (language use)General MedicinePlants01 natural sciencesApplied Microbiology and BiotechnologyTerpenoid03 medical and health sciences010608 biotechnologyBiochemical engineeringPlant StructuresBiotransformation030304 developmental biologyBiotechnologyCritical reviews in biotechnology
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