Search results for " fingerprint"

Wickerhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds.

2013

In the present work, we investigated the phylogenetic position and phenotypic characteristics of eight yeast isolates collected from migratory birds on the island of Ustica, Italy. A phylogenetic analysis based on the D1/D2 region of the large-subunit rRNA gene showed that all isolates clustered as a single separate lineage within the Wickerhamomyces clade. They exhibited distinct morphological and physiological characteristics and were clearly separated from their closest relatives, Wickerhamomyces lynferdii, Wickerhamomyces anomalus and Wickerhamomyces subpelliculosus, in blastn searches. On the basis of the isolation source, physiological features and molecular strain typing carried out …

Inter-laboratory evaluation of the ISO standard 11063 "Soil quality -- Method to directly extract DNA from soil samples"

2011

International audience; Extracting DNA directly from micro-organisms living in soil is a crucial step for the molecular analysis of soil microbial communities. However, the use of a plethora of different soil DNA extraction protocols, each with its own bias, makes accurate data comparison difficult. To overcome this problem, a method for soil DNA extraction was proposed to the International Organization for Standardization (ISO) in 2006. This method was evaluated by 13 independent European laboratories actively participating in national and international ring tests. The reproducibility of the standardized method for molecular analyses was evaluated by comparing the amount of DNA extracted, …

Copper Dynamics and Impact on Microbial Communities in Soils of Variable Organic Status

2008

International audience; The effect of soil organic status on copper impact was investigated by means of a microcosm study carried out on a vineyard soil that had been amended with varying types of organic matter during a previous long-term field experiment. Soil microcosms were contaminated at 250 mg Cu kg−1 and incubated for 35 days. Copper distribution and dynamics were assessed in the solid matrix by a sequential extraction procedure and in the soil solution by measuring total and free exchangeable copper concentrations. Copper bioavailability was also measured with a whole-cell biosensor. Modifications of microbial communities were assessed by means of biomass-C measurements and charact…

Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study

2013

This work was presented at the 6th Journée Scientifique du Réseau Français de Métabolomique et Fluxomique, Nantes, May 2012 and at the 8th International Conference of the Metabolomics Society, Washington, June 2012This work was presented at the 6th Journée Scientifique du Réseau Français de Métabolomique et Fluxomique, Nantes, May 2012 and at the 8th International Conference of the Metabolomics Society, Washington, June 2012; The metabo-ring initiative brought together five nuclear magnetic resonance instruments (NMR) and 11different mass spectrometers with the objective of assessing the reliability of untargeted metabolomics approaches in obtaining comparable metabolomics profiles. This wa…

A mathematical method for determining genome divergence and species delineation using AFLP.

2002

The delineation of bacterial species is presently achieved using direct DNA-DNA relatedness studies of whole genomes. It would be helpful to obtain the same genomically based delineation by indirect methods, provided that descriptions of individual genome composition of bacterial genomes are obtained and included in species descriptions. The amplified fragment length polymorphism (AFLP) technique could provide the necessary data if the nucleotides involved in restriction and amplification are fundamental to the description of genomic divergences. Firstly, in order to verify that AFLP analysis permits a realistic exploration of bacterial genome composition, the strong correspondence between …

Impact of a new bio-pesticide produced by Paenibacillus sp. strain B2 on the genetic structure and density of soil bacterial communities

2007

The effect of paenimyxin, a new biopesticide produced by Paenibacillus sp. strain B2, on the density of soil bacterial communities was assessed by colony counting and by 16S rDNA and nirK quantitative polymerase chain reaction (PCR). Paenimyxin had a negative effect on the bacterial colony-forming unit (CFU) number, which was significantly reduced 2 and 4 days after treatment. The effect of paenimyxin on cultivatable bacteria was negligible 7 days after treatment. Approximately 107 16S rDNA sequences per gram of soil (dry weight) were detected by quantitative PCR in all samples. Paenimyxin did not affect the quantification of 16S rDNA or of the denitrifying bacterial community. In addition,…

HPTLC fingerprinting—rapid method for the differentiation of honeys of different botanical origin based on the composition of the lipophilic fractions

2018

Bee honey possess various nutritional and medicinal functions, which are the result of its diverse chemical composition. The numerous bioactive compounds in honey come from flower nectar

New chemiometric technique applied to traceability of Sicilian honey of Sulla (Hedysarum coronarium L.)

The consumers have an increasing interest about food traceability with respect to safety, quality and typicality issues. Food traceability is an important issue in food safety and quality control, with impacts on food security, its quantity and overall availability. Furthermore, the possibility of tracing the origin of foodstuff is assuming an increasingly important role at the legislative level, as a tool that may allow to prove on product authenticity and to control adulteration. So, establish systems to trace food products through specified stages of production, processing and distribution play a key role also to ensure food safety. In the last years, several of analytical techniques hav…

An efficient grid-based RF fingerprint positioning algorithm for user location estimation in heterogeneous small cell networks

2014

This paper proposes a novel technique to enhance the performance of grid-based Radio Frequency (RF) fingerprint position estimation framework. First enhancement is an introduction of two overlapping grids of training signatures. As the second enhancement, the location of the testing signature is estimated to be a weighted geometric center of a set of nearest grid units whereas in a traditional grid-based RF fingerprinting only the center point of the nearest grid unit is used for determining the user location. By using the weighting-based location estimation, the accuracy of the location estimation can be improved. The performance evaluation of the enhanced RF fingerprinting algorithm was c…

Radio frequency fingerprinting for outdoor user equipment localization

2017

The recent advancements in cellular mobile technology and smart phone usage have opened opportunities for researchers and commercial companies to develop ubiquitous low cost localization systems. Radio frequency (RF) fingerprinting is a popular positioning technique which uses radio signal strength (RSS) values from already existing infrastructures to provide satisfactory user positioning accuracy in indoor and densely built outdoor urban areas where Global Navigation Satellite System (GNSS) signal is poor and hard to reach. However a major requirement for the RF fingerprinting to maintain good localization accuracy is the collection and updating of large training database. The Minimization…