Search results for " mechanics"

showing 10 items of 5066 documents

Collective behavior of quorum-sensing run-and-tumble particles in confinement

2016

We study a generic model for quorum-sensing bacteria in circular confinement. Every bacterium produces signaling molecules, the local concentration of which triggers a response when a certain threshold is reached. If this response lowers the motility then an aggregation of bacteria occurs, which differs fundamentally from standard motility-induced phase separation due to the long-ranged nature of the concentration of signal molecules. We analyze this phenomenon analytically and by numerical simulations employing two different protocols leading to stationary cluster and ring morphologies, respectively.

0301 basic medicineCollective behaviorGeneral Physics and AstronomyFOS: Physical sciencesNanotechnologyCondensed Matter - Soft Condensed MatterBacterial Physiological Phenomena01 natural sciencesSignalModels BiologicalQuantitative Biology::Cell BehaviorQuantitative Biology::Subcellular Processes03 medical and health sciences0103 physical sciencesCell Behavior (q-bio.CB)Cluster (physics)Physics - Biological Physics010306 general physicsCondensed Matter - Statistical MechanicsPhysicsStatistical Mechanics (cond-mat.stat-mech)ChemotaxisQuorum SensingQuorum sensing030104 developmental biologyChemical physicsBiological Physics (physics.bio-ph)FOS: Biological sciencesQuantitative Biology - Cell BehaviorSoft Condensed Matter (cond-mat.soft)
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Chip Formation and Control

2008

This chapter provides comprehensive engineering knowledge and modelling techniques applied in description of chip formation in the cutting zone and its separation from the bulk material, flow, and final breaking. Possible classification systems, including different chip shapes and physical mechanisms of their formation, are specified. The mechanisms of brittle fracture-based and shear-type chips are characterized in terms of plastic deformation and fracture mechanics. The models of the shear angle using different mechanical approaches are discussed. In addition, representative examples of FEM simulations of different types of chips for turning and milling operations are presented. Formulas …

0301 basic medicineEngineeringMaterials sciencebusiness.industryChip formationFlow (psychology)Mechanical engineeringFracture mechanicsStructural engineeringManufacturing systemsChip03 medical and health sciences030104 developmental biology0302 clinical medicineMachiningEmbedded system030220 oncology & carcinogenesisShear anglebusinessBrittle fractureComputingMethodologies_COMPUTERGRAPHICS
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Trochoidal motion and pair generation in skyrmion and antiskyrmion dynamics under spin-orbit torques

2018

Magnetic skyrmions are swirling magnetic spin structures that could be used to build next-generation memory and logic devices. They can be characterized by a topological charge that describes how the spin winds around the core. The dynamics of skyrmions and antiskyrmions, which have opposite topological charges, are typically described by assuming a rigid core. However, this reduces the set of variables that describe skyrmion motion. Here we theoretically explore the dynamics of skyrmions and antiskyrmions in ultrathin ferromagnetic films and show that current-induced spin–orbit torques can lead to trochoidal motion and skyrmion–antiskyrmion pair generation, which occurs only for either the…

0301 basic medicineFOS: Physical sciences01 natural sciencesSpin magnetic moment03 medical and health sciencesMesoscale and Nanoscale Physics (cond-mat.mes-hall)0103 physical sciencesElectrical and Electronic Engineering010306 general physicsInstrumentationTopological quantum numberSpin-½PhysicsCondensed Matter - Materials ScienceCondensed Matter - Mesoscale and Nanoscale PhysicsSkyrmionDynamics (mechanics)Materials Science (cond-mat.mtrl-sci)Condensed Matter::Mesoscopic Systems and Quantum Hall EffectHelicitySymmetry (physics)[PHYS.PHYS.PHYS-GEN-PH]Physics [physics]/Physics [physics]/General Physics [physics.gen-ph]Electronic Optical and Magnetic Materials030104 developmental biologyClassical mechanicsOrbit (dynamics)
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Numerical Treatment of the Filament-Based Lamellipodium Model (FBLM)

2017

We describe in this work the numerical treatment of the Filament-Based Lamellipodium Model (FBLM). This model is a two-phase two-dimensional continuum model, describing the dynamics of two interacting families of locally parallel F-actin filaments. It includes, among others, the bending stiffness of the filaments, adhesion to the substrate, and the cross-links connecting the two families. The numerical method proposed is a Finite Element Method (FEM) developed specifically for the needs of this problem. It is comprised of composite Lagrange–Hermite two-dimensional elements defined over a two-dimensional space. We present some elements of the FEM and emphasize in the numerical treatment of t…

0301 basic medicineFinite element spaceNumerical analysisPiecewise constant approximationMechanicsFinite element methodQuantitative Biology::Cell BehaviorQuantitative Biology::Subcellular ProcessesPiecewise linear functionProtein filament03 medical and health sciences030104 developmental biology0302 clinical medicineClassical mechanics030220 oncology & carcinogenesisBending stiffnessLamellipodiumMathematics
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Visualizing the spatiotemporal map of Rac activation in bovine aortic endothelial cells under laminar and disturbed flows.

2017

Disturbed flow can eliminate the alignment of endothelial cells in the direction of laminar flow, and significantly impacts on atherosclerosis in collateral arteries near the bifurcation and high curvature regions. While shear stress induced Rac polarity has been shown to play crucial roles in cell polarity and migration, little is known about the spatiotemporal map of Rac under disturbed flow, and the mechanism of flow-induced cell polarity still needs to be elucidated. In this paper, disturbed flow or laminar flow with 15 dyn/cm2 of average shear stress was applied on bovine aortic endothelial cells (BAECs) for 30 minutes. A genetically-encoded PAK-PBD-GFP reporter was transfected into BA…

0301 basic medicineFluorescence-lifetime imaging microscopyCell Membraneslcsh:MedicineMicrotubulesCell membraneLaminar Flow0302 clinical medicineCell polarityFluorescence microscopeMembrane fluidityCytoskeletonlcsh:ScienceShear StressesCytoskeletonAortaMultidisciplinaryChemistryPhysicsClassical MechanicsCell Polarityrac GTP-Binding Proteinsmedicine.anatomical_structurePhysical SciencesMechanical StressCellular Structures and OrganellesResearch ArticleCell PhysiologyImaging TechniquesMembrane FluidityFluid MechanicsResearch and Analysis MethodsContinuum Mechanics03 medical and health sciencesFluorescence ImagingShear stressmedicineAnimalsFluid Flowlcsh:RBiology and Life SciencesFluid DynamicsLaminar flowCell Biology030104 developmental biologyBiophysicsCattlelcsh:QEndothelium Vascular030217 neurology & neurosurgeryPLoS ONE
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Structural commonalities and deviations in the hierarchical organization of crossed-lamellar shells: A case study on the shell of the bivalve Glycyme…

2016

11 pages; International audience; The structural organization of the palliostracum—the dominant part of the shell which is formed by the mantle cells—of Glycymeris glycymeris (Linné 1758) is comprised of five hierarchical levels with pronounced structural commonalities and deviations from other crossed-lamellar shells. The hierarchical level known as second order lamellae, present within other crossed-lamellar shells, is absent highlighting a short-coming of the currently used nomenclature. On the mesoscale, secondary microtubules penetrate the palliostracum and serve as crack arrestors. Moreover, the growth lamellae follow bent trajectories possibly impacting crack propagation, crack defle…

0301 basic medicineGlycymerisStructural organizationMaterials sciencebiologyMechanical Engineeringcrystal growthtoughnessFracture mechanicsGeometry02 engineering and technology[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials021001 nanoscience & nanotechnologyCondensed Matter Physicsbiology.organism_classification03 medical and health sciencesCrystallography030104 developmental biologybiomimetic (assembly)Mechanics of MaterialsHierarchical organizationGeneral Materials ScienceLamellar structure0210 nano-technologyBiomineralizationJournal of Materials Research
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Evaluation of permeability applicability based on continuum mechanics law in fluid flow through graphene membrane

2019

AbstractGraphene is expected to be used in separation applications such as desalination. However, it is difficult to predict the flow phenomena at the nanoscale using the conventional continuum law. Particularly at a Knudsen number (Kn) of >0.1, which is applied in filtration, it has been reported that not even slip boundary conditions can be applied. In this study, to identify the parameters that affect the applicability of the continuum law, we conducted a fluid permeation simulation using graphene. The deviation of the permeability from that of the continuum model was calculated by changing the channel width, fluid temperature, and fluid type. The result showed that the channel width …

0301 basic medicineNanoscale materialsMultidisciplinaryMaterials scienceContinuum mechanicsContinuum (measurement)lcsh:Rlcsh:MedicineSlip (materials science)PermeationArticleMechanical engineering03 medical and health sciencesPermeability (earth sciences)030104 developmental biology0302 clinical medicineLawFluid dynamicslcsh:QKnudsen numberBoundary value problemGraphenelcsh:Science030217 neurology & neurosurgeryScientific Reports
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Wavelength selection of rippling patterns in myxobacteria

2016

Rippling patterns of myxobacteria appear in starving colonies before they aggregate to form fruiting bodies. These periodic traveling cell density waves arise from the coordination of individual cell reversals, resulting from an internal clock regulating them, and from contact signaling during bacterial collisions. Here we revisit a mathematical model of rippling in myxobacteria due to Igoshin et al.\ [Proc. Natl. Acad. Sci. USA {\bf 98}, 14913 (2001) and Phys. Rev. E {\bf 70}, 041911 (2004)]. Bacteria in this model are phase oscillators with an extra internal phase through which they are coupled to a mean-field of oppositely moving bacteria. Previously, patterns for this model were obtaine…

0301 basic medicinePeriodicityPhase transitionPhase (waves)FOS: Physical sciencesModels BiologicalMotion03 medical and health sciencesQuantum mechanicsWavenumberComputer SimulationMyxococcalesPhysics - Biological PhysicsCondensed Matter - Statistical MechanicsPhysicsStatistical Mechanics (cond-mat.stat-mech)Kuramoto modelNonlinear systemWavelength030104 developmental biologyClassical mechanicsNonlinear DynamicsMean field theoryBiological Physics (physics.bio-ph)RipplingLinear Models
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Stochastic sampling effects favor manual over digital contact tracing.

2020

Isolation of symptomatic individuals, tracing and testing of their nonsymptomatic contacts are fundamental strategies for mitigating the current COVID-19 pandemic. The breaking of contagion chains relies on two complementary strategies: manual reconstruction of contacts based on interviews and a digital (app-based) privacy-preserving contact tracing. We compare their effectiveness using model parameters tailored to describe SARS-CoV-2 diffusion within the activity-driven model, a general empirically validated framework for network dynamics. We show that, even for equal probability of tracing a contact, manual tracing robustly performs better than the digital protocol, also taking into accou…

0301 basic medicinePhysics - Physics and SocietyComputer scienceEpidemiologyScienceComplex networksFOS: Physical sciencesGeneral Physics and AstronomyPhysics and Society (physics.soc-ph)Tracingcomputer.software_genreGeneral Biochemistry Genetics and Molecular BiologyArticleSpecimen Handling03 medical and health sciences0302 clinical medicineHumans030212 general & internal medicineQuantitative Biology - Populations and EvolutionPandemicsCondensed Matter - Statistical Mechanicsstochastic modelProtocol (science)Stochastic ProcessesMultidisciplinaryStatistical Mechanics (cond-mat.stat-mech)Stochastic processDiagnostic Tests RoutineSARS-CoV-2QPopulations and Evolution (q-bio.PE)Sampling (statistics)COVID-19General ChemistryComplex networkModels TheoreticalNetwork dynamics030104 developmental biologyFOS: Biological sciencesScalabilityQuarantineData miningContact TracingcomputerContact tracingAlgorithmsNature communications
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Uhlmann number in translational invariant systems

2019

We define the Uhlmann number as an extension of the Chern number, and we use this quantity to describe the topology of 2D translational invariant Fermionic systems at finite temperature. We consider two paradigmatic systems and we study the changes in their topology through the Uhlmann number. Through the linear response theory we linked two geometrical quantities of the system, the mean Uhlmann curvature and the Uhlmann number, to directly measurable physical quantities, i.e. the dynamical susceptibility and to the dynamical conductivity, respectively.

0301 basic medicineSettore FIS/02 - Fisica Teorica Modelli E Metodi MatematiciMathematics::Analysis of PDEsFOS: Physical scienceslcsh:MedicineCurvatureArticleCondensed Matter - Strongly Correlated Electrons03 medical and health sciences0302 clinical medicineTopological insulatorsInvariant (mathematics)lcsh:ScienceCondensed Matter - Statistical MechanicsMathematicsMathematical physicsPhysical quantityQuantum PhysicsMultidisciplinaryChern classStatistical Mechanics (cond-mat.stat-mech)Strongly Correlated Electrons (cond-mat.str-el)lcsh:RUhlmann number Chern number 2D topological Fermionic systems finite temperature dynamical susceptibility dynamical conductivity030104 developmental biologylcsh:QQuantum Physics (quant-ph)Theoretical physicsLinear response theory030217 neurology & neurosurgeryScientific Reports
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