Search results for " method"
showing 10 items of 10455 documents
Bulk and interfacial properties in colloid-polymer mixtures
2005
Large-scale Monte Carlo simulations of a phase-separating colloid-polymer mixture are performed and compared to recent experiments. The approach is based on effective interaction potentials in which the central monomers of self-avoiding polymer chains are used as effective coordinates. By incorporating polymer nonideality together with soft colloid-polymer repulsion, the predicted binodal is in excellent agreement with recent experiments. In addition, the interfacial tension as well as the capillary length are in quantitative agreement with experimental results obtained at a number of points in the phase-coexistence region, without the use of any fit parameters.
Biophysical approaches for the study of metal-protein interactions
2019
Protein-protein interactions play important roles for a variety of cell functions, often involving metal ions; in fact, metal-ion binding mediates and regulates the activity of a wide range of biomolecules. Enlightening all of the specific features of metal-protein and metal-mediated protein-protein interactions can be a very challenging task; a detailed knowledge of the thermodynamic and spectroscopic parameters and the structural changes of the protein is normally required. For this purpose, many experimental techniques are employed, embracing all fields of Analytical and Bioinorganic Chemistry. In addition, the use of peptide models, reproducing the primary sequence of the metal-binding …
Momentum-dependent interfacial tension in polymer solutions
2002
A model for the interface between a concentrated and a very dilute polymer solution is studied by Monte Carlo simulations at temperatures below the Theta temperature (in bad solvent conditions). The wave-number–dependent interfacial tension γ(q) is extracted from an analysis of the capillary wave amplitudes. It is shown that γ(q) decreases monotonically with q2, while no evidence is found for the predicted increase γ(q) ∝ κq2 with a positive bending rigidity κ of the interface at large q. Consequences for the interpretations of simulations and experiments on interfacial widths are briefly discussed.
‘Intrinsic’ profiles and capillary waves at interfaces between coexisting phases in polymer blends
2001
Abstract Lateral fluctuations in the local position of the center of the interface between coexisting phases in unmixed polymer blends lead to a broadening of interfacial widths; comparing self-consistent field predictions for the ‘intrinsic’ profile to simulations (or experiments), this ‘capillary wave’ broadening needs consideration. This problem has been studied by extensive Monte Carlo simulations of the bond fluctuation model for symmetrical polymer mixtures, both for free interfaces (between bulk phases) and for confined interfaces (in thin films between parallel walls). While the capillary wave predictions at large length scales are confirmed, the extraction of the ‘intrinsic’ profil…
Interfaces between coexisting phases of polymer mixtures: Comparison between Monte Carlo simulations and theoretical predictions
1997
Large scale Monte Carlo investigations of the interface between A-rich and B-rich phases of symmetric binary (AB) polymer mixtures are presented, using the bond fluctuation model of flexible chains with NA=NB=N=32 effective monomers. The temperature range studied, 0.144<T/Tc0.759, includes both the strong and the weak segregation limit. Interfacial free energy and interfacial structure are studied, and compared to predictions based on the selfconsistent field theory. Also the broadening of the interfacial width due to capillary waves is considered, and finite size effects due to the confinement of interfaces in thin films of polymer blends are discussed.
A practical entry to β-aryl-β-alkyl amino alcohols: application to the synthesis of a potent BACE1 inhibitor
2012
The 1,2-addition of alkyl Grignard reagents to readily available N-tert-butanesulfinyl ketimines, bearing an α-silyloxy substituent, proceeds in high yields and excellent diastereocontrol. The utility of the present method was demonstrated by the synthesis, in enantiomerically pure form, of one recently disclosed β-secretase (BACE1) inhibitor.
Monte Carlo simulation of the glass transition in polymeric systems: Recent developments
1995
Abstract The bond fluctuation model on square and s.c. lattices is used as a coarse-grained model for flexible polymers in dense melts. Using an energy that favours long bonds, a conflict is created between the tendency of the bonds to stretch at low temperatures and packing constraints. This simple concept of ‘geometric frustration’ leads to glass transition. Both static and dynamic properties of this model are investigated by Monte Carlo simulations, paying attention to effects found by varying the cooling rate and the chain length N of the polymers. In two and three spatial dimensions an effective (cooling-rate dependent) glass transition temperature T g can be defined, where the system …
Adsorption-induced polymer translocation through a nanopore: a Monte Carlo investigation
2005
Abstract We study the translocation of a coarse-grained flexible polymer through a nanopore in a membrane induced by its adsorption on the trans side of the membrane. Dramatic differences in the threading behavior are observed if the adhesion to the membrane wall, e w , is below or above the adsorption threshold e c r . For e w e c r (weak adsorption) the activation barrier for translocation is at c cis 0 ≈ N / 2 (in terms of the fraction of chain c cis = N cis / N before the pore), independent of chain length N. For e w > e c r this barrier is at a constant (vanishing) number of passed trans monomers for all N. The mean time of chain passage τ trans ∝ c cis 1.3 when c cis c cis 0 . It scal…
Predominance of 2-arylhydrazones of 1,3-diphenylpropane-1,2,3-trione over its proton-transfer products
2001
2-Phenylhydrazones of 1,3-diphenyl-1,2,3-trione are the dominant tautomeric form detected in chloroform solution by 15N NMR chemical shifts. The substituent in the phenylhydrazone moiety does not affect this tautomeric preference. The substituent effect is transmitted effectively only to the hydrazone nitrogen and hydrogen atoms. Ab initio calculations show that the ketohydrazone tautomer is really very much favoured over its proton-transfer products in chloroform solution. The same tautomer was also detected in the crystal state by X-ray crystallography. Copyright © 2001 John Wiley & Sons, Ltd.
Regio- and stereoselective synthesis of constrained enantiomeric β-amino acid derivatives
2008
Abstract Chlorosulfonyl isocyanate addition to (−)- and (+)-apopinene furnished monoterpene-fused β-lactams in highly regio- and stereospecific reactions. β-Lactams 5 and 13 exhibited reactivities similar to those of the cycloalkane-fused analogs and were easily converted to the β-amino acid and its protected derivatives. The base-catalyzed isomerization of the cis -amino ester afforded the corresponding trans -amino acid enantiomers in excellent yields. The complete isomerization is explained by the stability difference, which was estimated by ab initio calculations between the cis- and trans -diastereomers.