Search results for " mitochondrial"

showing 10 items of 492 documents

Topology testing of phylogenies using least squares methods

2006

[Background] The least squares (LS) method for constructing confidence sets of trees is closely related to LS tree building methods, in which the goodness of fit of the distances measured on the tree (patristic distances) to the observed distances between taxa is the criterion used for selecting the best topology. The generalized LS (GLS) method for topology testing is often frustrated by the computational difficulties in calculating the covariance matrix and its inverse, which in practice requires approximations. The weighted LS (WLS) allows for a more efficient albeit approximate calculation of the test statistic by ignoring the covariances between the distances.

EvolutionInverseHepacivirusBiologyTopologyDNA MitochondrialLeast squares methodsLeast squaresEvolution MolecularGoodness of fit:CIENCIAS DE LA VIDA::Genética ::Ingeniería genética [UNESCO]Test statisticQH359-425AnimalsHumansLeast-Squares AnalysisPhylogenyEcology Evolution Behavior and SystematicsStatisticPhylogenetic treeCovariance matrixUNESCO::CIENCIAS DE LA VIDA::Genética ::Ingeniería genéticaMethodology ArticlePhylogenies; Least squares methodsClassificationHepatitis CTree (graph theory)Sea UrchinsPhylogenies
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Phylogeography of a Habitat Specialist with High Dispersal Capability: The Savi’s Warbler Locustella luscinioides

2012

In order to describe the influence of Pleistocene glaciations on the genetic structure and demography of a highly mobile, but specialized, passerine, the Savi's Warbler (Locustella luscinioides), mitochondrial DNA sequences (ND2) and microsatellites were analysed in c.330 individuals of 17 breeding and two wintering populations. Phylogenetic, population genetics and coalescent methods were used to describe the genetic structure, determine the timing of the major splits and model the demography of populations. Savi's Warblers split from its sister species c.8 million years ago and have two major haplotype groups that diverged in the early/middle Pleistocene. One of these clades originated in…

Evolutionary Genetics0106 biological sciencesAnimal EvolutionPopulation Dynamicslcsh:MedicinePopulation genetics01 natural sciencesCoalescent theoryWarblerSongbirdslcsh:ScienceGenome EvolutionPhylogenyLikelihood FunctionsPrincipal Component Analysis0303 health scienceseducation.field_of_studyMultidisciplinarybiologyGenomicsEuropePhylogeographyGenetic structureResearch ArticleGene FlowMolecular Sequence DataPopulationDNA Mitochondrial010603 evolutionary biology03 medical and health sciencesAnimalsEvolutionary SystematicseducationBiologyEcosystemDemography030304 developmental biologyAnalysis of VarianceEvolutionary BiologyBase SequenceModels Geneticlcsh:RComputational BiologyLocustella luscinioidesBayes TheoremSequence Analysis DNAbiology.organism_classificationOrganismal EvolutionPhylogeographyGenetics PopulationHaplotypesEvolutionary biologyBiological dispersallcsh:QAnimal MigrationGenome Expression AnalysisPopulation GeneticsMicrosatellite RepeatsPLoS ONE
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Fascioliasis transmission by Lymnaea neotropica confirmed by nuclear rDNA and mtDNA sequencing in Argentina

2009

Fascioliasis is widespread in livestock in Argentina. Among activities included in a long-term initiative to ascertain which are the fascioliasis areas of most concern, studies were performed in a recreational farm, including liver fluke infection in different domestic animal species, classification of the lymnaeid vector and verification of natural transmission of fascioliasis by identification of the intramolluscan trematode larval stages found in naturally infected snails. The high prevalences in the domestic animals appeared related to only one lymnaeid species present. Lymnaeid and trematode classification was verified by means of nuclear ribosomal DNA and mitochondrial DNA marker sequ…

FascioliasisMitochondrial DNAArgentinaZoologyDNA MitochondrialDNA Ribosomal18S ribosomal RNAElectron Transport Complex IVDNA Ribosomal Spacerparasitic diseasesRNA Ribosomal 18SAnimalsFasciola hepaticaRibosomal DNAFreshwater molluscLymnaeaGalba truncatulaGeneral VeterinarybiologyEcologySequence Analysis DNAGeneral MedicineRibosomal RNAbiology.organism_classificationFasciolaLarvaCattleParasitologyType localityVeterinary Parasitology
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2000 years of parallel societies in Stone Age Central Europe.

2013

Farming or Fishing Evidence has been mounting that most modern European populations originated from the immigration of farmers who displaced the hunter-gatherers of the Mesolithic. Bollongino et al. (p. 479 , published online 10 October) present analyses of palaeogenetic and isotopic data from Neolithic human skeletons from the Blätterhöhle burial site in Germany. The analyses identify a Neolithic freshwater fish–eating hunter-gatherer group, living contemporaneously and in close proximity to a Neolithic farming group. While there is some evidence that hunter-gatherer women may have admixed into the farming population, it appears likely that marriage or cultural boundaries between the group…

ForagingMolecular Sequence DataBiologyDNA MitochondrialStone AgeEvolution Molecular03 medical and health sciencesAnimalsHumans0601 history and archaeologyBase sequenceMesolithicHistory Ancient030304 developmental biology0303 health sciencesMultidisciplinary060102 archaeologyBase SequenceEcologybusiness.industryAgriculture06 humanities and the artsAnimal FeedEuropeAgricultureAnimals DomesticAnthropologybusinessScience (New York, N.Y.)
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The Important Role of the Nuclearity, Rigidity, and Solubility of Phosphane Ligands in the Biological Activity of Gold(I) Complexes

2018

A series of 4-ethynylaniline gold(I) complexes containing monophosphane (1,3,5-triaza-7-phosphaadamantane (pta; 2), 3,7-diacetyl-1,3,7-triaza-5-phosphabicyclo[3.3.1]nonane (3), and PR3 , with R=naphthyl (4), phenyl (5), and ethyl (6)) and diphosphane (bis(diphenylphosphino)acetylene (dppa; 7), trans-1,2-bis(diphenylphosphino)ethene (dppet; 8), 1,2-bis(diphenylphosphino)ethane (dppe; 9), and 1,3-bis(diphenylphosphino)propane (dppp; 10)) ligands have been synthesized and their efficiency against tumor cells evaluated. The cytotoxicity of complexes 2-10 was evaluated in human colorectal (HCT116) and ovarian (A2780) carcinoma as well as in normal human fibroblasts. All the complexes showed a hi…

FosfinaMolecular ConformationOrCrystal structureCrystallography X-RayLigandsMedicinal chemistry01 natural scienceskultachemistry.chemical_compoundCoordination ComplexesDiphosphaneSolubilityCytotoxicityta116bcl-2-Associated X ProteinMembrane Potential Mitochondrialbioaktiiviset yhdisteetBiological activitybiological activity of gold(I) complexesAcetyleneProto-Oncogene Proteins c-bcl-2rigidityCompostos d'ornuclearityPhosphineCell SurvivalPhosphinesAntineoplastic Agentsphosphane ligands010402 general chemistryCatalysisCell LineStructure-Activity RelationshipMoleculeHumans010405 organic chemistrysolubilityOrganic ChemistryGeneral ChemistrykompleksiyhdisteetHCT116 Cells0104 chemical sciencesLligandschemistryQuantum TheoryGoldNonaneReactive Oxygen SpeciesGold compoundsChemistry: A European Journal
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Fructose-1,6-Bisphosphate Protects Hippocampal Rat Slices from NMDA Excitotoxicity

2019

Effects of fructose 1,6-bisphosphate (F-1,6-P2) towards N-methyl-d-aspartate NMDA excitotoxicity were evaluated in rat organotypic hippocampal brain slice cultures (OHSC) challenged for 3 h with 30 &mu

Fructose 16-bisphosphateExcitotoxicityFructose-bisphosphate aldolaseorganotypic hippocampal brainslice culturesmedicine.disease_causeHippocampuslcsh:Chemistrychemistry.chemical_compoundenergymetabolismFructose-Bisphosphate Aldolaseenergy metabolismfructose-16-bisphosphatelcsh:QH301-705.5Spectroscopy<i>N</i>-methyl-<span style="font-variant: small-caps">d</span>-aspartatebiologyChemistryorganotypic hippocampal brain slice culturesGlyceraldehyde-3-Phosphate DehydrogenasesGeneral MedicineComputer Science ApplicationsFructose-BisphosphataseNeuroprotective AgentsNMDA receptorexcitotoxicityPhosphofructokinaseN-methyl-d-aspartatemedicine.medical_specialtyN-MethylaspartateFructose 16-bisphosphataseCatalysisArticleInorganic ChemistryNecrosisInternal medicinemitochondrial dysfunctionmedicineAnimalsPhysical and Theoretical ChemistryRats WistarMolecular BiologySettore BIO/10 - BIOCHIMICAOrganic ChemistryAldolase AMetabolismPurine NucleosidesRatsEndocrinologylcsh:Biology (General)lcsh:QD1-999Phosphofructokinases6-bisphosphatebiology.proteinfructose-1; 6-bisphosphate; N-methyl-d-aspartate; excitotoxicity; energymetabolism; mitochondrial dysfunction; organotypic hippocampal brainslice culturesfructose-1
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Applications of flow cytometry to toxicological mycotoxin effects in cultured mammalian cells: a review.

2013

This review gives an overview of flow cytometry applications to toxicological studies of several physiological target sites of mycotoxins on different mammalian cell lines. Mycotoxins are secondary metabolites of fungi that may be present in food, feed, air and water. The increasing presence of mycotoxins in crops, their wide distribution in the food chain, and their potential for toxicity demonstrate the need for further knowledge. Flow cytometry has become a valuable tool in mycotoxin studies in recent years for the rapid analysis of single cells in a mixture. In toxicology, the power of these methods lies in the possibility of determining a wide range of cell parameters, providing valuab…

FusariumCell SurvivalCellToxicologyFlow cytometryMicrobiologyCell Linechemistry.chemical_compoundFusariummedicineAnimalsHumansMycotoxinZearalenoneMammalsMembrane Potential MitochondrialAspergillusmedicine.diagnostic_testbiologyCell growthPenicilliumfood and beveragesAlternariaGeneral MedicineMycotoxinsbiology.organism_classificationFlow Cytometrymedicine.anatomical_structureAspergillusBiochemistrychemistryPenicilliumZearalenoneTrichothecenesFood ScienceFood and chemical toxicology : an international journal published for the British Industrial Biological Research Association
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Enniatin A1, enniatin B1 and beauvericin on HepG2: Evaluation of toxic effects

2015

Hepatotoxicity of three Fusarium mycotoxins, beauvericin (BEA) and two enniatins (ENNs) ENN A1 and ENN B1, in hepatocarcinoma cells (HepG2) were evaluated and compared. Concentrations used were 1.5 and 3 μM at 24, 48 and 72 h for each mycotoxin. Flow cytometry was used to examine enniatins effects on cell proliferation, to characterize the cell cycle phase where the cells blocked and to study the mitochondria role in ENNs-induced apoptosis. ENN B1 treated cells showed a time dependent G1 blockade at both concentrations used. ENN A1 and BEA decreased the apoptotic-necrotic percentage of cells comparing to control and disrupted the MMP as observed by TMRM and ToPro-3 fluorochromes signal. It …

FusariumStereochemistryApoptosisToxicologyFlow cytometryNecrosischemistry.chemical_compoundFusariumDepsipeptidesmedicineHumansMycotoxinCell ProliferationMembrane Potential Mitochondrialbiologymedicine.diagnostic_testCell growthCell CycleStereoisomerismHep G2 CellsGeneral MedicineMycotoxinsCell cyclebiology.organism_classificationMolecular biologyBeauvericinKineticschemistryApoptosisHepatocytesEnniatinFood ScienceFood and Chemical Toxicology
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Beauvericin-induced cytotoxicity via ROS production and mitochondrial damage in Caco-2 cells.

2013

The cytotoxicity of beauvericin (BEA) on human colon adenocarcinoma (Caco-2) cells was studied as a function of time. Moreover, the oxidative damage and cell death endpoints were monitored after 24, 48 and 72 h. After BEA exposure, the IC₅₀ values ranged from 1.9 ± 0.7 to 20.6 ± 6.9 μM. A decrease in reduced glutathione (GSH; 31%) levels, as well as an increase in oxidized glutathione (GSSG, 20%) was observed. In the presence of BEA, reactive oxygen species (ROS) level was highly increased at an early stage with the highest production of 2.0-fold higher than the control that was observed at 120 min. BEA induced cell death by mitochondria-dependent apoptotic process with loss of the mitochon…

G2 PhaseProgrammed cell deathDNA damageCell SurvivalApoptosisBiologyToxicologymedicine.disease_causechemistry.chemical_compoundInhibitory Concentration 50NecrosisDepsipeptidesmedicineHumansIntestinal Mucosachemistry.chemical_classificationMembrane Potential MitochondrialReactive oxygen speciesIonophoresCell growthGeneral MedicineGlutathioneMycotoxinsMolecular biologyGlutathioneBeauvericinCell biologyMitochondriaKineticsOxidative StresschemistryApoptosisLipid PeroxidationCaco-2 CellsReactive Oxygen SpeciesOxidation-ReductionOxidative stressDNA DamageToxicology letters
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TTAS a New Stilbene Derivative that Induces Apoptosis in Leishmania Infantum

2012

Leishmania parasites are able to undergo apoptosis (programmed cell death), similarly to mammalian cells. Recently it was demonstrated in vitro the anti-leishmanial effect of some natural and synthetic stilbenoids including resveratrol and piceatannol. In this study we evaluated the Leishmanicidal activity of a pool of stilbene derivatives which had previously shown high apoptotic efficacy against neoplastic cells. All the compounds tested were capable to decrease the parasite viability in a dose-dependent manner. Trans-stilbenes proved to be markedly more effective than cis-isomers. This was different from that observed in tumor cells in which cis-stilbenes were more potent cytotoxic agent…

G2 PhaseProgrammed cell deathLeishmaniasiSettore MED/17 - Malattie InfettiveImmunologyAntiprotozoal AgentsTUBULINApoptosisResveratrolChromatography AffinityLethal Dose 50chemistry.chemical_compoundGranulocyte-Macrophage Progenitor CellsAnnexin A5Leishmania infantumCytotoxicityCells CulturedMembrane Potential MitochondrialPiceatannolDose-Response Relationship DrugbiologyGeneral MedicineFlow CytometryHematopoietic Stem Cellsbiology.organism_classificationLeishmaniaPROGRAMMED CELL DEATHIn vitroInfectious DiseaseschemistryBiochemistrySTILBENESAntimony Sodium GluconateApoptosisStilbeneElectrophoresis Polyacrylamide GelParasitologyLeishmania infantumCell DivisionLEISHMANIASIS
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