Search results for " modifica"
showing 10 items of 817 documents
Analysis of pseudouridines and other RNA modifications using hydraPsiSeq protocol
2021
Detection of RNA modified nucleotides using deep sequencing can be performed by several approaches, including antibody-driven enrichment and natural or chemically induced RT signatures. However, only very few RNA modified nucleotides generate natural RT signatures and antibody-driven enrichment heavily depends on the quality of antibodies used and may be highly biased. Thus, the use of chemically-induced RT signatures is now considered as the most trusted experimental approach. In addition, the use of chemical reagents allows inclusion of simple "mock-treated" controls, to exclude spontaneous RT arrests, SNPs and other misincorporation-prone sites. Hydrazine is a well-known RNA-specific rea…
Mapping and Quantification of tRNA 2′-O-Methylation by RiboMethSeq
2018
Current development of epitranscriptomics field requires efficient experimental protocols for precise mapping and quantification of various modified nucleotides in RNA. Despite important advances in the field during the last 10 years, this task is still extremely laborious and time-consuming, even when high-throughput analytical approaches are employed. Moreover, only a very limited subset of RNA modifications can be detected and only rarely be quantified by these powerful techniques. In the past, we developed and successfully applied alkaline fragmentation-based RiboMethSeq approach for mapping and precise quantification of multiple 2'-O-methylation residues in ribosomal RNA. Here we descr…
Functionalization and patterning of reactive polymer brushes based on surface reversible addition and fragmentation chain transfer polymerization
2012
We present the synthesis of reactive polymer brushes prepared by surface reversible addition–fragmentation chain transfer polymerization of pentafluorophenyl acrylate. The reactive ester moieties can be used to functionalize the polymer brush film with virtually any functionality by simple post-polymerization modification with amines. Dithiobenzoic acid benzyl-(4-ethyltrimethoxylsilyl) ester was used as the surface chain transfer agent (S-CTA) and the anchoring group onto the silicon substrates. Reactive polymer brushes with adjustable molecular weight, high grafting density, and conformal coverage through the grafting-from approach were obtained. Subsequently, the reactive polymer brushes …
Substrate-Independent Stable and Adherent Reactive Surface Coatings and their Conversion with Amines
2007
To create stable, adherent and reactive surface coatings, a hybrid polymer composed of poly(methylsilsesquioxane) (PMSSQ) and poly(pentafluorophenyl acrylate) PFPA with a M n of 32000 g/mol was prepared by a RAFT polymerization procedure. These hybrid polymer has been used for coating experiments. The PFPA part enabled a variable functionalization of the coating afterwards. The stability on various substrates (e.g. glass, PMMA, steel) was tested in an ISO tape test. These reactive surface coatings were modified using different amines, such as amino-terminated PEG, dodecyl amine and N-isopropyl amine. The conversion was analyzed by FT-IR and contact angle measurements.
Versatile Responsive Surfaces via Hybrid Polymers Containing Acetal Side Groups
2009
Two hybrid polymers, poly(methylsilsesquioxane)-poly(2,2-diethoxyethyl acrylate) and poly-(methylsilsesquioxane)-poly(1,3-dioxolan-2-ylmethyl acrylate), were synthesized and used for preparation of stable surface coatings. Their acetal side groups could be functionalized via solution-dipping with different primary amines and hydroxylamines after acidic deprotection and thus allowed for flexible modification of the surface hydrophilicity. Functionalization with a thermo-responsive polymer resulted in a thermo-responsive surface with temperature-dependent contact angles. Further, the two types of acetals showed different stability toward acidic treatment and could be addressed independently.
Glycidyl methacrylate derivatization of α,β-poly(N-hydroxyethyl)-dl-aspartamide and α,β-polyasparthydrazide
1997
Abstract α,β-Poly(N-hydroxyethyl)- dl -aspartamide (PHEA) and α,β-polyasparthydrazide (PAHy) are two synthetic macromolecules having many potential applications in the field of biomedical sciences. This paper describes the functionalization of PHEA and PAHy with glycidyl methacrylate (GMA), in order to introduce pendant double bonds in their chains. Derivatized PHEA and PAHy (samples PHG and PAG, respectively) at various GMA content have been obtained and characterized. It has been shown that the derivatization reaction can be controlled by varying some parameters as solvent, catalyst, pH, GMA concentration and reaction time. As expected, PAHy reacted more rapidly and more extensively than …
Photochemical Functionalization of Allyl Benzoates by C-H Insertion
2013
The photoreactivity of allyl benzoates, containing an electron-rich double bond, has been explored by irradiation at 305 nm in different solvents. Solvent addition products arising from an insertion of the alpha H–C bonds of THF, dioxane, and i-PrOH to the allylic double bond was realized. The observed reactivity depended on reaction conditions and substitution pattern of the substrate. A DFT study on this unusual reaction was performed allowing the formulation of two mechanistic pathways.
Evaluation and comparison of tailor-made stationary phases based on spherical silica-based beads for capillary electrochromatography via peptide sepa…
2004
Small cyclic peptides have been employed to elucidate the performance of novel sorbents as stationary phases in capillary electrochromatography (CEC). In this paper chain length dependencies for ordinary liquid chromatographic sorbents are reported together with findings acquired on beads specifically designed to suit CEC. The latter, tailor-made, spherical, porous silica exhibits a distinguished surface modification to meet the criteria anticipated to enhance performance profiles in CEC. With well-characterised peptides resembling the analytes, probing of the CEC system in a systematic manner (predominantly via the organic modifier content of the background electrolyte (BE)) reveals insigh…
Hydrogen peroxide sensors for cellular imaging based on horse radish peroxidase reconstituted on polymer-functionalized TiO2 nanorods
2011
We describe the reconstitution of apo-horse radish peroxidase (apo-HRP) onto TiO2 nanorods functionalized with a multifunctional polymer. After functionalization, the horse radish peroxidase (HRP) functionalized TiO2 nanorods were well dispersible in aqueous solution, catalytically active and biocompatible, and they could be used to quantify and image H2O2 which is a harmful secondary product of cellular metabolism. The shape, size and structure of TiO2 nanorods (anatase) were analyzed by transmission electron microscopy (TEM), high resolution TEM (HRTEM), electron diffraction (ED) and X-ray diffraction (XRD). The surface functionalization, HRP reconstitution and catalytic activity were con…
Rod-Length Dependent Aggregation in a Series of Oligo(p-benzamide)-Block-Poly(ethylene glycol) Rod-Coil Copolymers
2005
The synthesis of a series of rod-coil diblock copolymers with flexible poly(ethylene oxide) chains (M n = 5 000 g mol -1 ) and rod blocks consisting of monodisperse oligo(p-benzamide)s is described. The formation of defined supramolecular aggregates in solution as well as the solid state has been analyzed. The length of the oligo(p-benzamide)s has been systematically varied from n = 1 to 7 units. The influence of n on aggregation in chloroform and aqueous solution was investigated by GPC as well as UV-vis spectroscopy. A critical aggregation length was found for chloroform (n = 5) and water (n = 4), below which no aggregation is observed under otherwise identical experimental conditions. Ag…