Search results for " transition"

showing 10 items of 2751 documents

Origin of Enzymatic Kinetic Isotope Effects in Human Purine Nucleoside Phosphorylase

2017

Here we report a study of the effect of heavy isotope labeling on the reaction catalyzed by human purine nucleoside phosphorylase (hPNP) to elucidate the origin of its catalytic effect and of the enzymatic kinetic isotope effect (EKIE). Using quantum mechanical and molecular mechanical (QM/MM) molecular dynamics (MD) simulations, we study the mechanism of the hPNP enzyme and the dynamic effects by means of the calculation of the recrossing transmission coefficient. A free energy surface (FES), as a function of both a chemical and an environmental coordinate, is obtained to show the role of the environment on the chemical reaction. Analysis of reactive and nonreactive trajectories allows us …

010304 chemical physicsChemistryPurine nucleoside phosphorylasevariational transition state theoryGeneral Chemistry010402 general chemistryenzyme catalysis01 natural sciencesChemical reactionCatalysis0104 chemical sciencesEnzyme catalysisCatalysisSolventMolecular dynamicsComputational chemistryenzymatic kinetic isotope effect0103 physical sciencesKinetic isotope effectMoleculeQM/MM methodsprotein motionsACS Catalysis
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A Rotational Thermalization Model for the Calculation of Collisionally Narrowed Isotropic Raman-Scattering Spectra - Application to the Srs-N2 Q-Bran…

1986

Abstract A model for the calculation of collisionally narrowed isotropic. Raman scattering spectra is proposed. In this model, the rotational transition probabilities are calculated within the strong collision approximation, allowing the rotational energy transfer rates to be expressed in terms of the sole individual Q( J ) line broadening coefficients. These transfer rates satisfy both detailed balance principle and unitarity of the scattering matrix in contrast with most of the previous approaches. Under further approximation concerning the rotational distribution of the collisional frequency, simpler expressions for transfer rates are deduced, which do not satisfy necessarily both unitar…

010304 chemical physicsUnitarityScatteringChemistryIsotropyGeneral Physics and AstronomyRotational transitionRotational temperatureDetailed balance01 natural sciencesRotational energy0103 physical sciencesPhysical and Theoretical ChemistryAtomic physics010306 general physicsSpectroscopy
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An investigation of photo- and pressure-induced effects in a pair of isostructural two-dimensional spin-crossover framework materials

2014

International audience; Two new isostructural iron(II) spin-crossover (SCO) framework (SCOF) materials of the type [Fe(dpms)2 (NCX)2 ] (dpms=4,4'-dipyridylmethyl sulfide; X=S (SCOF-6(S)), X=Se (SCOF-6(Se))) have been synthesized. The 2D framework materials consist of undulating and interpenetrated rhomboid (4,4) nets. SCOF-6(S) displays an incomplete SCO transition with only approximately 30 % conversion of high-spin (HS) to low-spin iron(II) sites over the temperature range 300-4 K (T1/2 =75 K). In contrast, the NCSe(-) analogue, SCOF-6(Se), displays a complete SCO transition (T1/2 =135 K). Photomagnetic characterizations reveal quantitative light- induced excited spin-state trapping (LIES…

010405 organic chemistryChemistryIronOrganic ChemistrySpin transitionMineralogyGeneral Chemistry[CHIM.MATE]Chemical Sciences/Material chemistryAtmospheric temperature range010402 general chemistrySpin crossover01 natural sciencesCatalysisLIESST0104 chemical sciencesCoordination polymersChalcogenCrystallographySpin crossoverExcited stateMetastabilityMagnetic propertiesChalcogensIsostructural
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Effect of Guest Molecules on Spin Transition Temperature in Loaded Hofmann‐Like Clathrates with Improved Porosity

2020

The synthesis, crystal structure, magnetic and calorimetric studies of a new clathrate compound of the Hofmann-type spin crossover (SCO) metal-organic framework (MOF) {Fe(bpb)[MII(CN)4]}·xGuest (bpb = bis(4-pyridyl)butadiyne, and MII = Ni, Pt) with characteristic fsc topology is reported. The framework {Fe(bpb)[MII(CN)4]} can host up to 1.5 guest molecules of (trifluoromethyl)benzene and display complete one-step cooperative SCO behavior. Our systematic study on {Fe(bpb)[Pt(CN)4]}·xGuest shows a general reciprocal correlation between the SCO temperature with the volume of the guest molecules.

010405 organic chemistryChemistrySpin transition010402 general chemistry01 natural sciences0104 chemical sciences3. Good healthInorganic ChemistryCrystallographySpin crossoverMoleculeMetal-organic frameworkHost–guest chemistryPorosityEuropean Journal of Inorganic Chemistry
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Variable Cooperative Interactions in the Pressure and Thermally Induced Multistep Spin Transition in a Two-Dimensional Iron(II) Coordination Polymer

2020

Two types of experiments conducted to investigate the effect of pressure on the spin crossover (SCO) properties of the 2D Fe(II) coordination polymer formulated {Fe[bipy(ttr)2]}n are reported, namely, (1) magnetic measurements performed at variable temperature and at fixed pressure and (2) visible spectroscopy at variable pressure and fixed temperature. The magnetic experiments carried out under a hydrostatic pressure constraint of 0.04, 0.08, and 0.8 GPa reveal a two-step spin transition behavior. The characteristic critical temperatures of the spin transition are shifted upward in temperature as pressure increases. The slope of the straight-line of the Tc vs P plot, dTc/dP, is 775 K/GPa a…

010405 organic chemistryCoordination polymerHydrostatic pressureSpin transitionElastic energyThermodynamicsFlory–Huggins solution theory010402 general chemistry01 natural sciences0104 chemical sciencesInorganic Chemistrychemistry.chemical_compoundUltraviolet visible spectroscopychemistrySpin crossoverLattice (order)Physical and Theoretical ChemistryInorganic Chemistry
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A spin-crossover complex based on a 2,6-bis(pyrazol-1-yl)pyridine (1-bpp) ligand functionalized with a carboxylate group

2014

Combining Fe(ii) with the carboxylate-functionalized 2,6-bis(pyrazol-1-yl)pyridine (bppCOOH) ligand results in the spin-crossover compound [Fe(bppCOOH)2](ClO4)2 which shows an abrupt spin transition with a T1/2 of ca. 380 K and a TLIESST of 60 K due to the presence of a hydrogen-bonded linear network of complexes.

010405 organic chemistryStereochemistryLigandSpin transition010402 general chemistry01 natural sciencesMedicinal chemistry3. Good health0104 chemical sciencesInorganic Chemistrychemistry.chemical_compoundLinear networkBPP ligandchemistrySpin crossoverGroup (periodic table)PyridineCarboxylateDalton Transactions
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Shallow vent architecture during hybrid explosive-effusive activity at Cordón Caulle (Chile, 2011-12): Evidence from direct observations and pyroclas…

2013

International audience; In June 2011, an eruption of rhyolite magma began at the Puyehue-Cordón Caulle volcanic complex, southern Chile. By January 2012, explosive activity had declined from sustained pyroclastic (Plinian to sub-Plinian) fountaining to mixed gas and ash jetting punctuated by Vulcanian blasts. This explosive activity was accompanied by synchronous effusion of obsidian lava in a hybrid explosive-effusive eruption. Fortuitous climatic conditions permitted ground-based observation and video recording of transient vent dynamics as well as real-time collection of proximal juvenile ash as it sedimented from the active plume. The main eruptive vent complex and site of lava effusion…

010504 meteorology & atmospheric sciencesLava[SDE.MCG]Environmental Sciences/Global ChangesSilicicPyroclastic rockMineralogyrhyolite010502 geochemistry & geophysics01 natural sciencestube pumiceobsidianGeochemistry and PetrologyPuyehue-Cordón CaulleRhyolite[SDU.STU.VO]Sciences of the Universe [physics]/Earth Sciences/VolcanologyTephraPetrology0105 earth and related environmental sciencesgeographyVulcanian eruptiongeography.geographical_feature_categoryPeléan eruptionexplosive-effusive transitionGeophysicsVolcanopermeabilityGeologyVulcanian
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Taphonomic processes inconsistent with indigenous Mesolithic acculturation during the transition to the Neolithic in the Western Mediterranean

2018

Abstract We applied taphonomic analysis combined with geostatistical approaches to investigate the hypothesis that Cocina cave (Eastern Iberia) represents an acculturation context for the appearance of Neolithic Cardial pottery. In the 1970s, Fortea suggested that this important site was a prime example of acculturation because of the presence of early Neolithic pottery in late Mesolithic contexts. Since that time Cocina cave has been heralded as an example of indigenous hunter-gatherers incorporating Neolithic cultural elements into their lifeways. We analyzed the area excavated by Fortea in the 1970s by digitizing archaeological records and testing the spatial distribution of artifacts us…

010506 paleontologyTaphonomyContext (archaeology)01 natural scienceslaw.inventionPrehistoryCavelaw0601 history and archaeologygeostatisticsRadiocarbon datingMesolithicneolithic transition0105 earth and related environmental sciencesEarth-Surface Processesgeography.geographical_feature_category060102 archaeologytaphonomycocina cave06 humanities and the artsArchaeologytaphonomy; geostatistics; radiocarbon; neolithic transition; cocina caveAcculturationGeographyradiocarbonPottery
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Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers

2019

This article belongs to the Special Issue The Complexity of the Potyviral Interaction Network.

0106 biological sciences0301 basic medicineComplex systemsSystems biologyPotyvirusDiseaseBiologytobacco etch virusSeverity of Illness Index01 natural sciencesArticlePlant VirusesTranscriptomeViral Proteins03 medical and health sciencesPlant-virus interactionpotyvirusGene Expression Regulation PlantVirologyProtein Interaction MappingTobaccoGene Regulatory NetworksProtein Interaction Mapscomplex systemsGenePlant DiseasesGeneticsTransition (genetics)Tobacco etch virusGene Expression Profilingsystems biologyDNBBiotic stressresponse to infectionbiology.organism_classificationplant-virus interactionTobacco etch virusphase transitionsprotein-protein interaction networks030104 developmental biologyInfectious DiseasesPhase transitionsHost-Pathogen InteractionsMutationBiomarker (medicine)BiomarkersSignal Transduction010606 plant biology & botanyViruses
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Much more than a clasp: evolutionary patterns of amplexus diversity in anurans

2020

AbstractThe evolution and diversification of animal reproductive modes have been pivotal questions in behavioural ecology. Amphibians present the highest diversity of reproductive modes among vertebrates, involving various behavioural, physiological and morphological traits. One such feature is the amplexus, which is the clasp or embrace of males on females during reproduction and is found almost universally in anurans. Hypotheses about the origin of amplexus are limited and have not been tested thoroughly, nor have they taken into account evolutionary relationships in most comparative studies. However, these considerations are crucial to an understanding of the evolution of reproductive mo…

0106 biological sciences0303 health sciencesPhylogenetic treemedia_common.quotation_subjectBiologyEvolutionary transitions010603 evolutionary biology01 natural sciencesSexual dimorphism03 medical and health sciencesAmplexusEvolutionary biologyBehavioral ecologyTraitEcology Evolution Behavior and Systematics030304 developmental biologyDiversity (politics)media_commonBiological Journal of the Linnean Society
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