Search results for "Agarose"

209 New Fricke gel with high sensitivity and low diffusion for 3D-MRI dosimetry

2018

Purpose Fricke gel (FG) dosimeters are good candidates for 3D dose assessment in biological materials. Their effective atomic number and density are similar to those of soft tissue. In view of their chemical and morphological characteristics, FG serve as dosimeters and as phantoms at the same time. FG dosimeters are obtained by incorporating an acidic aqueous solution of ferrous ions Fe2+ into a gel matrix. In order to address the limitations of gels based on natural matrices, we have studied FG produced with a matrix of poly-vinyl alcohol (PVA) cross-linked with glutaraldehyde (GTA). Materials and methods The proposed gel contains 10% w/v of PVA and GTA of 1%w/v. A common formulation agaro…

Agarose and PVA Fricke gel dosimeters exposed to clinical photons beams: Nuclear Magnetic Resonance Relaxometry and Imaging

2015

Fricke Xylenol Gel (FXG) dosimetric system is based on the radiation induced oxidation of ferrous (Fe2+) to ferric (Fe3+) ions. The application of Fricke gels for ionizing radiation dosimetry is continuously increasing worldwide due to their many favorable properties. However, one of their shortcomings is that ferrous and ferric ions diffuse in the gel matrix. To maintain the spatial integrity of the dose distribution, Fricke gels must be undergoing measurement within a few hours of their irradiation, so that ferric ions remain close to their point of production. Thus, the spatial integrity of the dose distribution in the Fricke gel is maintained. The gel matrix also contributes to the oxid…

Rapid DNA elution procedure from agarose gels.

1996

Increasing voltage gradient electrophoresis of DNA

2007

We developed a method which allows electrophoretic fractionation of DNA in an agarose matrix according to an increasing current gradient, using a previously designed [R. Barbieri, V. Izzo, M.A. Costa, G. Giudice, G. Duro, Anal. Biochem. 212 (1993) 168; M.R. Asaro, V. Izzo, R. Barbieri, J. Chromatogr. A 855 (1999) 723] voltage gradient apparatus. This method allows the separation of different DNA fragments by increasing the distances of the components fractionated in the gel, revealing small differences in the length of different DNA components.

A method for eluting DNA in a wide range of molecular weights from agarose gels

1991

We have developed a simple and rapid method for recovering DNAs of a wide range of molecular weights from agarose gels. A DNA-containing gel slice is placed on a Parafilm sheet in the center of a circular (positive) electrode and covered with a drop of buffer, while a linear (negative) electrode is placed on the top of the gel and driven about 1 mm into the gel itself. When a continuous current is applied, the DNA migrates into the buffer toward the circular electrode. We have obtained almost total recovery of DNAs up to 10 kb in size. Our method may also be used, under appropriate conditions, for higher molecular weight DNAs. The yield and all the biological assays performed on the DNAs ob…

GEL DOSIMETERS FOR RADIOTHERAPY APPLICATIONS: RESULTS OF A “RESEARCH PROJECT OF NATIONAL INTEREST” (PRIN)

2016

Introduction: Gel dosimeters for three-dimensional mapping of radiotherapy doses were introduced at Yale University in the mid-1980’s. Soon after, research and development in this field also started in Italy. Early work was done at the Istituto Superiore di Sanità and at the Universities of Pisa and Milan. Several institutes now collaborate on this topic with the goal of developing new formulations of hydrogel matrices with improved characteristics of stability, sensitivity and spatial resolution compared to those of earlier Fricke-gel and polymer-gel systems. Materials and methods: Contrary to earlier gels based on natural gelling agents, such as porcine skin gelatin and/or agarose, which …

Specific detection of cyclobutane pyrimidine dimers in phytoplankton DNA by a non-radioactive assay based on T4-endonuclease V digestion.

2001

The effect of artificial and natural UV irradiation on DNA in marine phytoplankton Isochrysis galbana monoculture was investigated. The presence of cyclobutane pyrimidine dimers (CPDs) in unlabelled I. galbana DNA was detected by a non-radiometric alkaline filter elution assay after T4-endonuclease V digestion. The quantity of CPDs was estimated by alkaline agarose gel electrophoresis. Precise determination of the amount of DNA in the presence of I. galbana pigments was achieved by oxazole yellow homodimer (YOYO) dye. T4-endonuclease V-sensitive sites frequency (ESS/kb), measured after exposure to 2-40 kJ m(-2) of artificial UV light, increased in a dose-dependent manner. Twelve hours after…

Physics of agarose fluid gels: Rheological properties and microstructure

2021

Agarose, a strongly gelling polysaccharide, is a common ingredient used to optimize the viscoelastic properties of a multitude of food products. Through aggregation of double helices via hydrogen bonds while cooling under quiescent conditions it forms firm and brittle gels. However, this behavior can be altered by manipulating the processing conditions viz shear. For example, gelation under shear leads to microgel particles with large surface area, which in turn leads to completely different rheological properties and texture. Such fluid gels are shown to play an important role in texture modification of foods and beverages for dysphagia patients. In this study, different concentration of a…

Diffusion and sensitivity characteristics of a chemically cross-linked PVA-Fricke gel dosimeter

2016

Introduction: Current radiotherapy techniques implement treatment plans based on volumetric distributions of dose with complex shapes and sharp gradients. The agreement between these plans and the dose that is truly delivered is very challenging to verify. Thus, there is the need for a dosimetric system that is truly three dimensional, sensitive to radiation in each point and tissue equivalent. In this framework, great interest is encountered by radio-chromic gel dosimeters. In order to address the limitations of gels based on natural matrices, some investigators have proposed dosimeters based on poly vinyl alcohol (PVA) made by freezing-thawing cycles. Even though these gels have a low dif…

DNA quantification approach by GE-ICP-SFMS and complementary total phosphorus determination by ICP-SFMS

2006

Quantification of DNA is still a great challenge for scientists in many fields. Here, we present the on-line coupling of gel electrophoresis (GE) and inductively coupled plasma-sector field mass spectrometry (ICP-SFMS) for quantitative purposes. GE conditions are chosen for optimised separations depending on the target analyte composition in terms of DNA chain length. In particular, agarose concentrations are varied in the range 0.6–2.2%, which corresponds to a separation range of DNA from 100 base pairs (bp) to genomic DNA (approximately 3 Mbp). Separated DNA compounds are directly transported at a flow rate of 100 μL min−1 to a Micromist nebuliser which is followed by ICP-SFMS with 31P de…