Search results for "Amino acid sequence"

showing 10 items of 1296 documents

Common genetic denominators for Ca++-based skeleton in Metazoa: role of osteoclast-stimulating factor and of carbonic anhydrase in a calcareous spong…

2012

Calcium-based matrices serve predominantly as inorganic, hard skeletal systems in Metazoa from calcareous sponges [phylum Porifera; class Calcarea] to proto- and deuterostomian multicellular animals. The calcareous sponges form their skeletal elements, the spicules, from amorphous calcium carbonate (ACC). Treatment of spicules from Sycon raphanus with sodium hypochlorite (NaOCl) results in the disintegration of the ACC in those skeletal elements. Until now a distinct protein/enzyme involved in ACC metabolism could not been identified in those animals. We applied the technique of phage display combinatorial libraries to identify oligopeptides that bind to NaOCl-treated spicules: those oligop…

Anatomy and PhysiologyMarine and Aquatic Scienceslcsh:MedicineBiochemistryCalcium Chloridechemistry.chemical_compoundMolecular Cell BiologySycon raphanuslcsh:ScienceCarbonic AnhydrasesSclerocytechemistry.chemical_classification0303 health sciencesMultidisciplinaryCalcareous spongebiology030302 biochemistry & molecular biologyIntracellular Signaling Peptides and ProteinsRecombinant ProteinsAmorphous calcium carbonatePoriferaEnzymesChemistrymedicine.anatomical_structureBiochemistryMedicineOligopeptidesResearch ArticleBiotechnologyDNA ComplementaryMolecular Sequence DataMarine BiologyCalcium Carbonate03 medical and health sciencesSponge spiculeOsteoclastCarbonic anhydraseChemical BiologymedicineAnimalsAmino Acid SequenceBiology030304 developmental biologySequence Homology Amino AcidEvolutionary Developmental Biologylcsh:Rbiology.organism_classificationEnzymechemistryEarth Sciencesbiology.proteinCalciumlcsh:QPeptidesPhysiological ProcessesDevelopmental BiologyPLoS ONE
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Factors influencing the interaction of herpes simplex virus glycoprotein C with the third component of complement.

1992

The factors influencing the interaction of herpes simplex virus (HSV) glycoprotein C (gC) with the third component of complement (C3) were investigated in this study. The ability of gC of HSV type 1 (gC-1) to bind to the C3b fragment of C3 was found to be influenced by cell specific processing of gC-1 in a different manner, binding being remarkably enhanced in some cell lines following removal of sialic acid residues. Testing several intertypic recombinants of HSV we found that only strains expressing gC-1 exhibited binding to C3b, even though their genome consisted mainly of HSV-2 sequences in some recombinants. Expression of type-2 glycoproteins gB, gD, gE, gG, gH, and gI did not alter th…

AnionsRosette FormationMolecular Sequence DataBiologyIn Vitro Techniquesmedicine.disease_causeViruschemistry.chemical_compoundStructure-Activity RelationshipViral Envelope ProteinsVirologymedicineTumor Cells CulturedAnimalsHumansSimplexvirusAmino Acid SequenceVero Cellschemistry.chemical_classificationHeparinTemperatureGeneral MedicineNeomycinHerpesvirus glycoprotein BVirologySialic acidHerpes simplex viruschemistryComplement C3bVero cellbiology.proteinAntibodyGlycoproteinmedicine.drugProtein BindingArchives of virology
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Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa)

2001

Recently the term Urmetazoa, as the hypothetical metazoan ancestor, was introduced to highlight the finding that all metazoan phyla including the Porifera (sponges) are derived from one common ancestor. Sponges as the evolutionarily oldest, still extant phylum, are provided with a complex network of structural and functional molecules. Analyses of sponge genomes from Demospongiae (Suberites domuncula and Geodia cydonium), Calcarea (Sycon raphanus) and Hexactinellida (Aphrocallistes vastus) have contributed also to the reconstruction of the evolutionary position of Metazoa with respect to Fungi. Furthermore, these analyses have provided evidence that the characteristic evolutionary novelties…

AnkyrinsMolecular Sequence DataReceptors Cell SurfaceEvolution MolecularGeneticsMelanogasterAnimalsHumansAmino Acid SequenceViridiplantaeSycon raphanusPhylogenyCaenorhabditis elegansGeneticsGenomeSequence Homology Amino AcidbiologyPhylumImmunityGeneral Medicinebiology.organism_classificationPoriferaSuberites domunculaSpongeGenesHomo sapiensGene
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Neuroglobin and cytoglobin: fresh blood to the vertebrate globin family

2002

Neuroglobin and cytoglobin are two recently discovered members of the vertebrate globin family. Both are intracellular proteins endowed with hexacoordinated heme-Fe atoms, in their ferrous and ferric forms, and display O2 affinities comparable with that of myoglobin. Neuroglobin, which is predominantly expressed in nerve cells, is thought to protect neurons from hypoxic–ischemic injury. It is of ancient evolutionary origin, and is homologous to nerve globins of invertebrates. Cytoglobin is expressed in many different tissues, although at varying levels. It shares common ancestry with myoglobin, and can be traced to early vertebrate evolution. The physiological roles of neuroglobin and cytog…

AnnelidaMolecular Sequence DataNeuroglobinNerve Tissue ProteinsHemeReview ArticleBiochemistryMicechemistry.chemical_compoundbiology.animalGeneticsAnimalsHumansAmino Acid SequenceGlobinMolecular BiologyHemeZebrafishConserved SequenceZebrafishBrain ChemistrybiologyCytoglobinCytoglobinBrainVertebratebiology.organism_classificationMolecular biologyGlobinsCell biologyOxygenMyoglobinchemistryNeuroglobinSequence AlignmentFunction (biology)EMBO reports
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The transcriptome of Echinostoma caproni adults: further characterization of the secretome and identification of new potential drug targets.

2013

Abstract Echinostomes are cosmopolitan parasites that infect a large number of different warm-blooded hosts, both in nature and in the laboratory. They also constitute an important group of food-borne trematodes of public health importance mainly in Southeast Asia and the Far East. In addition, echinostomes are an ideal model to study several aspects of intestinal helminth biology, since they present a number of advantages. For example, echinostomes are large worms whose life cycle is relatively easy to maintain in the laboratory. Recently, several studies documented their great value in the study of intestinal helminth–vertebrate host relationship. Detailed knowledge of their genome, trans…

AnthelminticsEchinostomiasisProteomeved/biologyved/biology.organism_classification_rank.speciesBiophysicsComputational biologyHelminth ProteinsBiologyBiochemistryMolecular biologyGenomeHomology (biology)TranscriptomeSecretory proteinMetabolomicsDrug Delivery SystemsEchinostomaProteomeHelminthsAnimalsAmino Acid SequenceModel organismJournal of proteomics
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Antibody Induction Directed against the Tumor-Associated MUC4 Glycoprotein

2015

Mucin glycoproteins are important diagnostic and therapeutic targets for cancer treatment. Although several strategies have been developed to explore anti-tumor vaccines based on MUC1 glycopeptides, only few studies have focused on vaccines directed against the tumor-associated MUC4 glycoprotein. MUC4 is an important tumor marker overexpressed in lung cancer and uniquely expressed in pancreatic ductual adenocarcinoma. The aberrant glycosylation of MUC4 in tumor cells results in an exposure of its peptide backbone and the formation of tumor-associated glycopeptide antigens. Due to the low immunogenicity of these endogenous structures, their conjugation with immune stimulating peptide or prot…

Antibodies NeoplasmMolecular Sequence DataCancer VaccinesBiochemistryEpitopeEpitopesMiceAntigenAntibody SpecificityCell Line TumorTetanus ToxoidAnimalsHumansAmino Acid SequenceMolecular BiologyMUC1chemistry.chemical_classificationMice Inbred BALB CMucin-4biologyImmune SeraImmunogenicityVaccinationOrganic ChemistryToxoidGlycopeptidePancreatic NeoplasmschemistryTandem Repeat SequencesImmunologybiology.proteinMolecular MedicineFemalesense organsAntibodyGlycoproteinChemBioChem
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Antibody Complementarity-Determining Regions (CDRs) Can Display Differential Antimicrobial, Antiviral and Antitumor Activities

2008

9 p. Background: Complementarity-determining regions (CDRs) are immunoglobulin (Ig) hypervariable domains that determine specific antibody (Ab) binding. We have shown that synthetic CDR-related peptides and many decapeptides spanning the variable region of a recombinant yeast killer toxin-like antiidiotypic Ab are candidacidal in vitro. An alanine-substituted decapeptide from the variable region of this Ab displayed increased cytotoxicity in vitro and/or therapeutic effects in vivo against various bacteria, fungi, protozoa and viruses. The possibility that isolated CDRs, represented by short synthetic peptides, may display antimicrobial, antiviral and antitumor activities irrespective of Ab…

Antifungal AgentsBIOCHEMISTRY AND MOLECULAR BIOLOGYMolecular Sequence DataImmunologylcsh:MedicineAntineoplastic AgentsMicrobial Sensitivity TestsComplementarity determining regionBiologyAntiviral AgentsOncology/Skin CancersAntibodiesMiceMicrobiology/Applied MicrobiologyAntigenBiochemistry/Protein ChemistryInfectious Diseases/Fungal InfectionsIn vivoCell Line TumorCandida albicansInfectious Diseases/Viral InfectionsAnimalsHumansAmino Acid Sequencelcsh:SciencePeptide sequenceMultidisciplinaryMEDICINElcsh:RAntimicrobialComplementarity Determining RegionsVirologyIn vitroOncologyBiochemistryViral replicationAGRICULTURAL AND BIOLOGICAL SCIENCESVirology/Immunodeficiency VirusesHIV-1biology.proteinlcsh:QAntibodyResearch ArticlePLoS ONE
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Pga13 in Candida albicans is localized in the cell wall and influences cell surface properties, morphogenesis and virulence.

2011

The fungal cell wall is an essential organelle required for maintaining cell integrity and also plays an important role in the primary interactions between pathogenic fungi and their hosts. PGA13 encodes a GPI protein in the human pathogen Candida albicans, which is highly up-regulated during cell wall regeneration in protoplasts. The Pga13 protein contains a unique tandem repeat, which is present five times and is characterized by conserved spacing between the four cysteine residues. Furthermore, the mature protein contains 38% serine and threonine residues, and therefore probably is a highly glycosylated cell wall protein. Consistent with this, a chimeric Pga13-V5 protein could be localiz…

Antifungal AgentsSurface PropertiesCellMorphogenesisHyphaeCalcofluor-whiteKidneyMicrobiologyMicrobiologyCell wallFungal ProteinsMiceCell WallStress PhysiologicalOrganelleCandida albicansGeneticsmedicineCell AdhesionAnimalsHumansAmino Acid SequenceCell adhesionCandida albicansOligonucleotide Array Sequence AnalysisSequence DeletionFungal proteinMice Inbred BALB CbiologyVirulenceGene Expression ProfilingProtoplastsCandidiasisFlocculationbiology.organism_classificationCell biologymedicine.anatomical_structureFemaleSequence AlignmentFungal genetics and biology : FGB
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Ag+ Complexes as Potential Therapeutic Agents in Medicine and Pharmacy

2019

Silver is a non-essential element with promising antimicrobial and anticancer properties. This work is a detailed summary of the newest findings on the bioinorganic chemistry of silver, with a special focus on the applications of Ag+ complexes and nanoparticles. The coordination chemistry of silver is given a reasonable amount of attention, summarizing the most common silver binding sites and giving examples of such binding motifs in biologically important proteins. Possible applications of this metal and its complexes in medicine, particularly as antibacterial and antifungal agents and in cancer therapy, are discussed in detail. The most recent data on silver nanoparticles are also summari…

Antifungalsilver nanoparticlesSilvermedicine.drug_classCancer therapyMetal NanoparticlesNanoparticleAntineoplastic Agents02 engineering and technologyPharmacology010402 general chemistry01 natural sciencesBiochemistrySilver(I) complexesSilver nanoparticleCoordination complexStructure-Activity RelationshipAnti-Infective AgentsCoordination ComplexesDrug DiscoverymedicineHumansAmino Acid SequenceAmino AcidsIonsPharmacologychemistry.chemical_classificationMolecular StructureChemistryOrganic Chemistryantibacterial and anticancer activity of Ag+021001 nanoscience & nanotechnologyCombinatorial chemistry0104 chemical sciencescysteine and methionine motifsMolecular Medicine0210 nano-technologyProtein BindingCurrent Medicinal Chemistry
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Specific bovine antibody response against a new recombinant Cryptosporidium parvum antigen containing 4 zinc-finger motifs

2002

A Cryptosporidium parvum sporozoite and oocyst lambda gt11 cDNA library was screened with a hyperimmune rabbit serum that was developed against insoluble fragments of ultrasonicated oocysts. A clone named Cp22.4.1 encoding a protein of 231 amino acids with 4 zinc-finger domains characterized by a Cys-X2-Cys-X4-His-X4-Cys motif was isolated and characterized. There was a complete match between the sequencing data of the coding region of Cp22.4.1 and the corresponding gene at chromosomal level. Cloning in a pBAD-TOPO-TA expression vector permitted to evaluate the antigenicity of the recombinant His-tagged antigen. This antigen was recognized by 2 out of 5 sera from Cryptosporidium immune calv…

Antigenicityanimal diseasesMolecular Sequence DataProtozoan ProteinsAntibodies ProtozoanAntigens ProtozoanMolecular cloningBrief Communicationlaw.inventionAntigenlawparasitic diseasesAnimalsAmino Acid SequenceZinc fingerCryptosporidium parvumExpression vectorbiologyBase SequencecDNA libraryZinc Fingersbiology.organism_classificationVirologyRecombinant ProteinsInfectious DiseasesCryptosporidium parvumRecombinant DNAParasitologyCattleRabbits
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