Search results for "Aqueous solution"

showing 10 items of 1610 documents

Catalytic Reaction Mechanism in Native and Mutant Catechol- O-methyltransferase from the Adaptive String Method and Mean Reaction Force Analysis.

2018

Catechol- O-methyltransferase is an enzyme that catalyzes the methylation reaction of dopamine by S-adenosylmethionine, increasing the reaction rate by almost 16 orders of magnitude compared to the reaction in aqueous solution. Here, we combine the recently introduced adaptive string method and the mean reaction force method, in combination with the structural and electronic descriptors to characterize the reaction mechanism. The catalytic effect of the enzyme is addressed by the comparison of the reaction in the human wild-type enzyme, in the less effective Y68A mutant, and in aqueous solution. The influence of these different environments at different stages of the chemical process and th…

Reaction mechanismS-AdenosylmethionineDopamine010402 general chemistryCatechol O-Methyltransferase01 natural sciencesMethylationCatalysisCatalysisReaction ratechemistry.chemical_compoundCatalytic Domain0103 physical sciencesMaterials ChemistryMoleculeHumansPhysical and Theoretical ChemistryCatecholAqueous solution010304 chemical physicsbiologyChemistryActive siteWaterCombinatorial chemistry0104 chemical sciencesSurfaces Coatings and FilmsMutationbiology.proteinSN2 reactionThermodynamicsThe journal of physical chemistry. B
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Electroreduction of aliphatic chlorides at silver cathodes in water

2010

The effect of water on the reduction of aliphatic chlorides at silver cathodes was investigated by cyclovoltammetric experiments in acetonitrile, water and their mixture and focused electrolyses in water solutions. The addition of water to acetonitrile gives rise to the formation of new peaks and/or the displacement of pre-existent peaks at dramatically less negative potentials. In a water medium, silver shows a very large electrocatalytic effect towards the reduction of chlorinated aliphatic compounds belonging to the classes of chloromethanes, chloroethanes and chloroethenes, dramatically higher than that observed in aprotic solvents such as dimethylformamide (DMF) or acetonitrile (ACN). …

Reaction mechanismSilverAqueous solutionChemistryGeneral Chemical EngineeringElectrocatalysiInorganic chemistryDe-halogenationSettore ING-IND/27 - Chimica Industriale E TecnologicaElectrochemistryElectrocatalystAnalytical Chemistrychemistry.chemical_compoundElectrochemistryDimethylformamideWater treatmentElectrochemical remediationAliphatic compoundAcetonitrileAliphatic chlorideJournal of Electroanalytical Chemistry
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Theoretical study of phosphodiester hydrolysis in nucleotide pyrophosphatase/phosphodiesterase. Environmental effects on the reaction mechanism.

2010

We here present a theoretical study of the alkaline hydrolysis of methyl p-nitrophenyl phosphate (MpNPP(-)) in aqueous solution and in the active site of nucleotide pyrophosphatase/phosphodiesterase (NPP). The analysis of our simulations, carried out by means of hybrid quantum mechanics/molecular mechanics (QM/MM) methods, shows that the reaction takes place through different reaction mechanisms depending on the environment. Thus, while in aqueous solution the reaction occurs by means of an A(N)D(N) mechanism, the enzymatic process takes place through a D(N)A(N) mechanism. In the first case, we found associative transition-state (TS) structures, while in the enzyme TS structures have dissoc…

Reaction mechanismStereochemistrydnaNAlkaline hydrolysis (body disposal)Molecular Dynamics SimulationBiochemistryCatalysisHydrolysisColloid and Surface ChemistryCatalytic DomainPyrophosphatasesAqueous solutionbiologyChemistryNucleotidesPhosphoric Diester HydrolasesHydrolysisActive sitePhosphodiesteraseWaterGeneral ChemistryAlkaline PhosphataseSolutionsZincPhosphodiester bondbiology.proteinXanthomonas axonopodisThermodynamicsJournal of the American Chemical Society
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ChemInform Abstract: Oxidative Transformation of Aryls Using Molybdenum Pentachloride

2012

Molybdenum pentachloride combines a strong Lewis acid character with an unusually high oxidation potential creating a powerful reagent for oxidative transformations. Since the oxidative coupling reaction of aryls is induced at an extraordinarily high reaction rate, a variety of labile groups, e.g. iodo, tert-alkyl, etc., are tolerated on the aromatic core. Furthermore, the co-formed molybdenum salts can either be exploited for template effects to obtain uncommon geometries in a preferred manner, or redox-play starts after aqueous workup. Therefore MoCl5 represents a unique and easily available reagent.

Reaction rateAqueous solutionchemistryMolybdenumReagentchemistry.chemical_elementOxidative coupling of methaneGeneral MedicineOxidative phosphorylationLewis acids and basesMolybdenum pentachlorideCombinatorial chemistryChemInform
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Development of a biosensor for copper detection in aqueous solutions using an Anemonia sulcata recombinant GFP.

2014

Fluorescent proteins from marine organisms represent potential candidates for biosensor development. In this paper, we described the isolation of a native green fluorescent protein from Anemonia sulcata and the cloning and purification of its equivalent as a recombinant protein in Escherichia coli. Furthermore, the spectroscopic behaviours of the native and recombinant GFPs were investigated as a function of Cu2+, Cd2+, Pb 2+ and Ni2+ concentration. Our results suggest the high selectivity of both proteins at copper than the other metals and, for the recombinant protein, a great sensitivity at a very low concentration (0.1-1 μM). Moreover, starting from these data, using the combination of …

Recombinant proteinGreen Fluorescent Proteinschemistry.chemical_elementBioengineeringBiosensing Techniquesmedicine.disease_causeApplied Microbiology and BiotechnologyBiochemistrylaw.inventionGreen fluorescent proteinlawQuenchingmedicineEscherichia coliAnimalsGreen fluorescent proteinMolecular BiologyEscherichia coliQuenching (fluorescence)Aqueous solutionChromatographyChemistryDivalent metal ionCopper; Detector; Divalent metal ions; Green fluorescent protein; Quenching; Recombinant proteinDetectorGeneral MedicineFluorescenceCopperSea AnemonesRecombinant DNABiosensorCopperBiotechnologyApplied biochemistry and biotechnology
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Electrochemical characterization of mangrove sediments: A proposal of new proxies for organic matter oxidation

2019

Abstract The voltammetric response of microparticulate deposits resulting from solvent evaporation of ethanolic extracts of mangrove sediments in contact with aqueous acetate buffer is hereby described. Dated sediment cores sampled from the Peruvian mangrove system (“Manglares de Tumbes” National Sanctuary) presented voltammetric responses dominated by oxidative signals of organic components that exhibit significant variations depending on the depth. Voltammetric data allowed for the definition of electrochemical indexes representative of the electrochemically oxidable organic matter fraction. These electrochemical indexes were fEAOM (for the total amount of organic matter being electrochem…

Redox state010501 environmental sciences010502 geochemistry & geophysicsElectrochemistryMangrove sediments01 natural sciencesevaporationPeruElectrochemistryChemical analysisInfrared spectroscopyorganic matterchemistry.chemical_classificationAqueous solutionChemistryBiogeochemistryPollutionOrganic matter oxidationEnvironmental chemistryOrganic matter degradationsMangroveoxidationInfrared spectroscopyredox conditionssolventSedimentsVoltammetric responseGeochemistry and PetrologyOrganic compoundsOrganic matter fractionEnvironmental ChemistryOrganic matter14. Life underwaterSpectroscopyOxidation proxies0105 earth and related environmental sciencesparticulate mattermangrove//purl.org/pe-repo/ocde/ford#1.05.00 [https]SedimentBiological materials15. Life on landcoastal sedimentElectrochemical characterizationssediment coreSolvent evaporationVoltammetryethanolacetateaqueous solutionReactive oxygen species
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Synthesis of Au, Ag, and Au–Ag Bimetallic Nanoparticles Using Pulicaria undulata Extract and Their Catalytic Activity for the Reduction of 4-Nitrophe…

2020

Plant extract of Pulicaria undulata (L.) was used as both reducing agent and stabilizing ligand for the rapid and green synthesis of gold (Au), silver (Ag), and gold&ndash

Reducing agentGeneral Chemical EngineeringAlloycatalytic activityNanoparticleengineering.materialCatalysisMetallcsh:Chemistrychemistry.chemical_compound<i>Pulicaria undulata</i>General Materials SciencesilverBimetallic stripAqueous solutiontechnology industry and agriculture4-Nitrophenolgoldchemistrylcsh:QD1-999bimetallicvisual_artvisual_art.visual_art_mediumengineeringplant extractnanoparticlesNuclear chemistryNanomaterials
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Dynamics of hyaluronan aqueous solutions as assessed by fast field cycling NMR relaxometry.

2010

Fast field cycling (FFC) NMR relaxometry has been used to study the conformational properties of aqueous solutions of hyaluronan (HYA) at three concentrations in the range 10 to 25 mg mL(-1). Results revealed that, irrespective of the solution concentration, three different hydration layers surround hyaluronan. The inner layer consists of water molecules strongly retained in the proximity of the HYA surface. Because of their strong interactions with HYA, water molecules in this inner hydration layer are subject to very slow dynamics and have the largest correlation times. The other two hydration layers are made of water molecules which are located progressively further from the HYA surface.…

RelaxometryAqueous solutionMagnetic Resonance SpectroscopyField cyclingChemistrySettore AGR/13 - Chimica AgrariaDynamics (mechanics)Analytical chemistryWaterBiochemistryAnalytical ChemistryIntramolecular forceQuadrupoleMolecular motionCarbohydrate ConformationMoleculeFFC-NMR Relaxometry Correlation time Quadrupole interactions Hydration layerHyaluronic AcidAnalytical and bioanalytical chemistry
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An effective negative pressure cavitation-microwave assisted extraction for determination of phenolic compounds in P. calliantha H. Andr.

2013

A novel negative pressure and microwave assisted extraction technique (NMAE) was first proposed and applied for extraction of phenolic compounds from pyrola. [C₄MIM]BF₄ aqueous solution was selected as extraction solvent. Optimal extraction conditions were microwave power 700 W, negative pressure -0.07 MPa, temperature 40 °C, liquid-solid ratio 20 : 1, ionic liquid (IL) concentration 0.5 M, extraction time 15 min. The predominance of NMAE was investigated by comparing with microwave-assisted extraction (MAE) and negative pressure cavitation extraction (NPCE) using a first-order kinetics equation. The C∞ values of the target compounds by NMAE were from 0.406 to 5.977 mg g⁻¹ higher than these…

ReproducibilityAqueous solutionChromatographyPlant ExtractsLiquid-Liquid ExtractionExtraction (chemistry)Analytical chemistryRepeatabilityBiochemistryAnalytical ChemistrySolventMatrix (chemical analysis)chemistry.chemical_compoundPhenolschemistryIonic liquidPressureElectrochemistryEnvironmental ChemistrySample preparationMicrowavesPyrolaChromatography High Pressure LiquidSpectroscopyThe Analyst
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Comparative modelling study on enantioresolution of structurally unrelated compounds with amylose-based chiral stationary phases in reversed phase li…

2020

[EN] Polysaccharide-based chiral stationary phases (CSPs) are the most used chiral selectors in HPLC. These CSPs can be used in normal, polar organic and aqueous-organic mobile phases. However, normal and polar organic mobile phases are not adequate for chiral separation of polar compounds, for the analysis of aqueous samples and for MS detection. In these situations, reversed phase conditions, without the usual non-volatile additives incompatible with MS detection, are preferable. Moreover, in most of the reported chiral chromatographic methods, retention is too large for routine work. In this paper, the chiral separation of 53 structurally unrelated compounds is studied using three commer…

Resolution (mass spectrometry)Reversed phase liquid hromatography010402 general chemistryMass spectrometry01 natural sciencesBiochemistryHigh-performance liquid chromatographyAmylose-based chiral stationary phasesMass SpectrometryAnalytical Chemistrychemistry.chemical_compoundAmylosePhase (matter)Least-Squares AnalysisAcetonitrileEnantioresolution modelling and descriptionChromatography High Pressure LiquidChromatography Reverse-PhaseAqueous solutionChromatography010401 analytical chemistryOrganic ChemistryDiscriminant partial least squaresStereoisomerismGeneral MedicineReversed-phase chromatography0104 chemical sciencesModels ChemicalchemistryFeature selectionRegression AnalysisAmyloseJournal of Chromatography A
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