Search results for "Biochemistry"

showing 10 items of 20172 documents

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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The Chlamydomonas genome reveals the evolution of key animal and plant functions

2007

Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as the structure, assembly, and function of eukaryotic flagella (cilia), which were inherited from the common ancestor of plants and animals, but lost in land plants. We sequenced the ∼120-megabase nuclear genome of Chlamydomonas and performed comparative phylogenomic analyses, identifying genes encoding uncharacterized proteins that are likely associated with the function and biogenesis of chloroplasts or eukaryotic flagella. Analyses of the Chlamydomonas genome advance our understanding of the a…

0106 biological sciencesMESH: Sequence Analysis DNAMESH: Algal ProteinsChloroplastsProteomeMESH: PlantsChlamydomonas reinhardtii01 natural sciencesGenomeMESH: Membrane Transport ProteinsDNA AlgalMESH: DNA AlgalMESH: AnimalsGoniumPhotosynthesisMESH: PhylogenyMESH: PhotosynthesisPhylogenyGenetics0303 health sciencesGenomeMultidisciplinarybiologyMESH: Genomicsfood and beveragesGenomicsPlantsBiological EvolutionMESH: Genes[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biomolecules [q-bio.BM]MESH: ProteomeFlagellaMultigene FamilyMESH: Computational BiologyMESH: Chlamydomonas reinhardtiiNuclear geneMolecular Sequence Data[SDV.BC]Life Sciences [q-bio]/Cellular BiologyFlagellumMESH: FlagellaArticle03 medical and health sciencesIntraflagellar transportMESH: EvolutionAnimalsMESH: Genome[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biochemistry [q-bio.BM]Gene[SDV.BC] Life Sciences [q-bio]/Cellular Biology030304 developmental biologyMESH: Molecular Sequence DataMESH: ChloroplastsAlgal ProteinsChlamydomonasComputational BiologyMembrane Transport ProteinsSequence Analysis DNAbiology.organism_classificationGenesMESH: Multigene FamilyChlamydomonas reinhardtii010606 plant biology & botany
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Do carotenoid-based sexual traits signal the availability of non-pigmentary antioxidants?

2006

SUMMARY Carotenoid-based signals are thought to be indicators of male quality because they must be obtained from the diet and might thus indicate the ability of individuals to gather high-quality food. However, carotenoids are also known to have important physiological functions as immunoenhancers and antioxidants, and, as such, carotenoid-based sexual traits have also been suggested to reflect the health and antioxidant status of their bearers. This last idea is based on the hypothesis that carotenoids that are allocated to sexual signals are no longer available for the detoxification system. Recently, this hypothesis has been challenged on the grounds that the antioxidant activity is not …

0106 biological sciencesMaleAntioxidantPhysiologymedicine.medical_treatmentMESH: Random AllocationMESH : LuteinMESH: BeakXanthophylls01 natural sciencesAntioxidantsRandom Allocationpolycyclic compounds[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisMESH: AnimalsFood scienceMESH : FinchesCarotenoidMESH: MelatoninMelatoninchemistry.chemical_classification0303 health sciencesSex CharacteristicsbiologyMESH : MelatoninPigmentationMESH : PigmentationBeakfood and beveragesPasserinecarotenoïdsBiochemistryMESH : AntioxidantsMESH : XanthophyllsMESH: Finchesmedicine.drugMESH: Sex CharacteristicsoxidationMESH : Malefree radicalsmacromolecular substances[ SDV.BBM.BM ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyAquatic ScienceMESH: Lutein010603 evolutionary biologyMESH: PigmentationMESH : Random AllocationMelatonin03 medical and health sciencessexual advertisementZeaxanthinsbiology.animalmedicineAnimalsMolecular BiologyZebra finchEcology Evolution Behavior and Systematics030304 developmental biologyMESH : Carotenoidsorganic chemicalsMESH: Antioxidantszebra finchLuteinMESH : Sex Characteristics[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyMESH: XanthophyllsCarotenoidsMESH: Malebiological factorsMESH : BeakchemistryInsect ScienceMESH: CarotenoidsAnimal Science and ZoologyMESH : AnimalsFinches[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/SymbiosisThe Journal of experimental biology
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Evolutionary conservation advice for despotic populations: habitat heterogeneity favours conflict and reduces productivity in Seychelles magpie robins

2010

Individual preferences for good habitat are often thought to have a beneficial stabilizing effect for populations. However, if individuals preferentially compete for better-quality territories, these may become hotspots of conflict. We show that, in an endangered species, this process decreases the productivity of favoured territories to the extent that differences in productivity between territories disappear. Unlike predictions from current demographic theory on site-dependent population regulation (ideal despotic distribution), we show that population productivity is reduced if resources are distributed unevenly in space. Competition for high-quality habitat can thus have detrimental con…

0106 biological sciencesMaleConservation of Natural Resourcesmedia_common.quotation_subjectPopulationEndangered speciesBiologySeychelles010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyCompetition (biology)AnimalsPasseriformeseducationProductivityResearch ArticlesEcosystemGeneral Environmental Sciencemedia_commoneducation.field_of_studyIdeal free distributionGeneral Immunology and MicrobiologyBehavior AnimalEcology010604 marine biology & hydrobiologyReproductionHabitat conservationGeneral Medicine15. Life on landBiological EvolutionSpatial heterogeneitySocial DominanceBiological dispersalFemaleGeneral Agricultural and Biological SciencesTerritoriality
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Social immunity and the evolution of group living in insects

2015

The evolution of group living requires that individuals limit the inherent risks of parasite infection. To this end, group living insects have developed a unique capability of mounting collective anti-parasite defences, such as allogrooming and corpse removal from the nest. Over the last 20 years, this phenomenon (called social immunity) was mostly studied in eusocial insects, with results emphasizing its importance in derived social systems. However, the role of social immunity in the early evolution of group living remains unclear. Here, I investigate this topic by first presenting the definitions of social immunity and discussing their applications across social systems. I then provide a…

0106 biological sciencesMaleInsectaMultiple forms[SDV]Life Sciences [q-bio]Group livingBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyHerd immunityDevelopmental psychologyHost-Parasite Interactions03 medical and health sciencesImmunitySocial groomingAnimalsSocial BehaviorEcosystemComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesBehavior AnimalEcology[SDV.BA]Life Sciences [q-bio]/Animal biologyArticlesEusocialityBiological Evolution[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologySocial systemFemaleSocial evolutionGeneral Agricultural and Biological Sciences
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Offspring reverse transcriptome responses to maternal deprivation when reared with pathogens in an insect with facultative family life

2020

Offspring of species with facultative family life are able to live with and without parents (i.e. to adjust to extreme changes in their social environment). While these adjustments are well understood on a phenotypic level, their genetic underpinnings remain surprisingly understudied. Investigating gene expression changes in response to parental absence may elucidate the genetic constraints driving evolutionary transitions between solitary and family life. Here, we manipulated maternal presence to observe gene expression changes in the fat body of juvenile European earwigs, an insect with facultative family life. Because parents typically protect offspring against pathogens, expression chan…

0106 biological sciencesMaleInsectaOffspringEvolution[SDV]Life Sciences [q-bio]Biology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyTranscriptome03 medical and health sciencesAnimalsGeneComputingMilieux_MISCELLANEOUS030304 developmental biologyGeneral Environmental ScienceGenetics0303 health sciencesMaternal deprivationFacultativeGeneral Immunology and MicrobiologyBehavior Animal[SDV.BA]Life Sciences [q-bio]/Animal biologyGeneral MedicinePhenotypeBiological EvolutionFamily life[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyFemalesense organsGeneral Agricultural and Biological SciencesTranscriptomePaternal care
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The preference and costs of sleeping under light at night in forest and urban great tits

2019

Artificial light at night (ALAN) is an increasing phenomenon associated with worldwide urbanization. In birds, broad-spectrum white ALAN can have disruptive effects on activity patterns, metabolism, stress response and immune function. There has been growing research on whether the use of alternative light spectra can reduce these negative effects, but surprisingly, there has been no study to determine which light spectrum birds prefer. To test such a preference, we gave urban and forest great tits (Parus major) the choice where to roost using pairwise combinations of darkness, white light or green dim light at night (1.5 lux). Birds preferred to sleep under artificial light instead of dar…

0106 biological sciencesMaleLight pollutionForestsartificial light at night01 natural sciencesoxalic acidSleep debtOxalic acidParus majorPasseriformesGeneral Environmental Sciencevuorokausirytmi0303 health sciencesbiologyBehavior Animallight pollutionGeneral MedicinetalitiainenPE&RCSleep in non-human animalsPreferenceCircadian RhythmLight pollutioninternationalMAMMALSDarknessFemalekaupungistuminenGeneral Agricultural and Biological SciencesBEHAVIORenergiankulutus (aineenvaihdunta)ZoologyurbanizationAnimal Breeding and Genomics010603 evolutionary biologyGeneral Biochemistry Genetics and Molecular Biologyuni (lepotila)03 medical and health sciencesBiointeractions and Plant HealthAnimalsCOLORBehaviourFokkerij en GenomicaCircadian rhythmsleepPHYSIOLOGYARTIFICIAL-LIGHTLighting030304 developmental biologyParusWhite (horse)BIRDSGeneral Immunology and MicrobiologyINTENSITYMEMORYUrbanizationPERFORMANCEbiology.organism_classificationvalosaasteEnergy MetabolismEnvironmental PollutionSleepArtificial light at nightALTERS
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Rapid assessment of female preference for male size predicts subsequent choice of spawning partner in a socially monogamous cichlid fish.

2011

5 pages; International audience; Although size-assortative mating in convict cichlids, Amatitliana nigrofasciata, is supposed to result from mutual mating preference for larger individuals, female choice in relation to male size remains ambiguous. We revisited the evidence for directional preference for larger males in female convict cichlids using a classical two-way choice apparatus in which each female could decide to spend time in front of a small male or a large one. We found evidence for female preference for large males, as assessed from association preference during a 4-hour period following encounter. Furthermore, females decided to spawn in front of the initially preferred male mo…

0106 biological sciencesMaleMate choiceDirectional preferenceBody size010603 evolutionary biology01 natural sciencesChoice BehaviorGeneral Biochemistry Genetics and Molecular BiologySexual Behavior AnimalCichlid[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimals0501 psychology and cognitive sciences14. Life underwater050102 behavioral science & comparative psychologySocial BehaviorConvict cichlid[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyGeneral Immunology and MicrobiologybiologyEcology05 social sciencesBody WeightGeneral MedicineCichlidsBody sizeMating Preference Animalbiology.organism_classificationSpawn (biology)Rapid assessmentMate choiceSexual behaviorConvict cichlidFemale[SDE.BE]Environmental Sciences/Biodiversity and EcologyAmatitliana nigrofasciataGeneral Agricultural and Biological SciencesDemography[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Genome Economization in the Endosymbiont of the Wood Roach Cryptocercus punctulatus Due to Drastic Loss of Amino Acid Synthesis Capabilities

2011

Cockroaches (Blattaria: Dictyoptera) harbor the endosymbiont Blattabacterium sp. in their abdominal fat body. This endosymbiont is involved in nitrogen recycling and amino acid provision to its host. In this study, the genome of Blattabacterium sp. of Cryptocercus punctulatus (BCpu) was sequenced and compared with those of the symbionts of Blattella germanica and Periplaneta americana, BBge and BPam, respectively. The BCpu genome consists of a chromosome of 605.7 kb and a plasmid of 3.8 kb and is therefore approximately 31 kb smaller than the other two aforementioned genomes. The size reduction is due to the loss of 55 genes, 23 of which belong to biosynthetic pathways for amino acids. The …

0106 biological sciencesMaleMolecular Sequence DataCockroachesBiology010603 evolutionary biology01 natural sciences03 medical and health scienceschemistry.chemical_compoundBlattabacteriumGenome SizeValineGeneticsEndophytesAnimalsAmino Acidsgenome reductionGenome sizeEcology Evolution Behavior and SystematicsAmino acid synthesisResearch Articles030304 developmental biology2. Zero hungerchemistry.chemical_classificationGenetics0303 health sciencesBlattabacteriumMethionineBacteroideteswood-feedingbiology.organism_classificationsymbiosisAmino acidchemistryBiochemistrymetabolic pathway lossFemaleIsoleucineLeucineGenome BacterialGenome Biology and Evolution
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Post-copulatory sexual selection allows females to alleviate the fitness costs incurred when mating with senescing males.

2019

8 pages; International audience; Male senescence has detrimental effects on reproductive success and offspring fitness. When females mate with multiple males during the same reproductive bout, post-copulatory sexual selection that operates either through sperm competition or cryptic female choice might allow females to skew fertilization success towards young males and as such limit the fitness costs incurred when eggs are fertilized by senescing males. Here, we experimentally tested this hypothesis. We artificially inseminated female North African houbara bustards with sperm from dyads of males of different (young and old) or similar ages (either young or old). Then, we assessed whether si…

0106 biological sciencesMaleOffspringEvolutionpaternal ageBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyBirds03 medical and health sciencesReproductive senescenceSexual Behavior Animalreproductive senescenceAnimalsMatingSperm competitionLife History Traits030304 developmental biologyGeneral Environmental Science0303 health sciencesGeneral Immunology and MicrobiologyReproductive successoffspring survivalReproductionGeneral MedicineSpermSpermatozoaFemale sperm storageSexual selectionFertilizationFemalesperm selection[SDE.BE]Environmental Sciences/Biodiversity and EcologyGeneral Agricultural and Biological Sciencessiring successDemography[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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