Search results for "Biological system"
showing 10 items of 319 documents
SPtsAnalysis: a high-throughput super-resolution single particle trajectory analysis to reconstruct organelle dynamics and membrane re-organization
2021
AbstractSuper-resolution imaging can generate thousands of single-particle trajectories. These data can potentially reconstruct subcellular organization and dynamics, as well as measure disease-linked changes. However, computational methods that can derive quantitative information from such massive datasets are currently lacking. Here we present data analysis and algorithms that are broadly applicable to reveal local binding and trafficking interactions and organization of dynamic sub-cellular sites. We applied this analysis to the endoplasmic reticulum and neuronal membrane. The method is based on spatio-temporal time window segmentation that explores data at multiple levels and detects th…
Neural network models for prediction of trichothecene content in wheat
2008
Fusarium graminearum is a mould that causes serious diseases in cereals worldwide and that synthesises mycotoxins such as deoxynivalenol (DON), which can seriously affect human and animal health. Predicting the level of mycotoxin accumulation in food is very difficult, because of the complexity of the influencing parameters. In this work, we have studied the possibility of using artificial neural networks (NN) to predict DON level attained in F. graminearum wheat cultures taking as inputs the fungal contamination level of the cereal, the water activity as a measure of the available water for fungal growth in the cereal, the temperature and time. DON analysis was performed by gas chromatogr…
Fusion of biological membranes
2005
The process of membrane fusion has been examined by Monte Carlo simulation, and is found to be very different than the conventional picture. The differences in mechanism lead to several predictions, in particular that fusion is accompanied by transient leakage. This prediction has recently been verified. Self-consistent field theory is applied to examine the free energy barriers in the different scenarios.
Spatio-Temporal Analysis of Constitutive Exocytosis in Epithelial Cells
2006
Exocytosis is an essential cellular trafficking process integral to the proper distribution and function of a plethora of molecules, including transporters, receptors, and enzymes. Moreover, incorrect protein targeting can lead to pathological conditions. Recently, the application of evanescent wave microscopy has allowed us to image the final steps of exocytosis. However, spatio-temporal analysis of fusion of constitutive vesicular traffic with the plasma membrane has not been systematically performed. Also, the spatial sites and times of vesicle fusion have not yet been analyzed together. In addition, more formal tests are required in testing biological hypotheses, rather than visual insp…
Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ
2019
Background Gene regulatory networks can be modelled in various ways depending on the level of detail required and biological questions addressed. One of the earliest formalisms used for modeling is a Boolean network, although these models cannot describe most temporal aspects of a biological system. Differential equation models have also been used to model gene regulatory networks, but these frameworks tend to be too detailed for large models and many quantitative parameters might not be deducible in practice. Hybrid models bridge the gap between these two model classes – these are useful when concentration changes are important while the information about precise concentrations and binding…
Automatic shape detection of ice crystals
2021
Abstract Clouds have a crucial impact on the energy balance of the Earth-Atmosphere system. They can cool the system by partly reflecting or scattering of the incoming solar radiation (albedo effect); moreover, thermal radiation as emitted from the Earth's surface can be absorbed and partly re-emitted by clouds leading to a warming of the atmosphere (greenhouse effect). The effectiveness of both effects crucially depends on the size and the shape of a cloud's particulate constituents, i.e. liquid water droplets or solid ice crystals. For studying cloud microphysics, in situ measurements on board of aircraft are commonly used. An important class of measurement techniques comprises optical ar…
On the function of cell systems in area 18. Part I
1981
In addition to the asymmetry of the spatial coupling and of the specific temporal combination of excitation and inhibition, the non-linearity is very pronounced in area 18. Taking the sequence of a linear operation and a stationary nonlinear characteristic as a model, the experimental findings can be systematized and a cell classification specified which departs from the customary ones. The hypercomplex cell system probably originates in recurrent inhibition and leads to differentiation of the patterns along their contour line. Problems of cell classification and of the type of parallelism in the visual cortex are discussed.
Multivariate versus univariate calibration for nonlinear chemiluminescence data
2001
Abstract Multivariate calibration is tested as an alternative to model chromium(III) concentration versus chemiluminescence registers obtained from luminol-hydrogen peroxide reaction. The multivariate calibration approaches included have been: conventional linear methods (principal component regression (PCR) and partial least squares (PLS)), nonlinear methods (nonlinear variants and variants of locally weighted regression) and linear methods combined with variable selection performed in the original or in the transformed data (stepwise multiple linear regression procedure). Both the direct and inverse univariate approaches have been also tested. The use of a double logarithmic transformatio…
Pulsed field gel electrophoresis and genome size estimates
2015
Pulsed field gel electrophoresis (PFGE) is a quick and reliable procedure to resolve DNA molecules larger than 30 kb by applying an electric field that periodically changes direction. This technique can be used to estimate genome size of a microorganism, to reveal if a genome is circular or linear, to indicate the presence of megaplasmids, and to show if a strain contains only one or more chromosomes.
Structurally Uniform Oligomers
1985
Model compounds as well as prototype reactions are frequently used to understand more complex chemical systems. In the case of phenolic resins a large number of model compounds have been synthesized. They are regarded as either components of a complex mixture of novolaks or resoles or as representative segments of the phenolic crosslinked network. These model compounds were formerly the basis for the correlation of physical properties to molecular structure. Presently the progress of analytical separations and identification methods is formidable; highly sophisticated chemical instrumentation allows the analysis of highly complex mixtures. Nevertheless, well defined compounds with definite …