Search results for "Biological system"

Digital rock physics, chemistry, and biology: challenges and prospects of pore-scale modelling approach

2021

Abstract Conventional and unconventional hydrocarbon rocks have complicated pore structures with heterogeneities distributed over various length scales (from nanometre to centimetre or even larger scales). Effective characterization of the properties of such rocks based on their digital twins is a challenging task. Digital rock physics (DRP) can be used to quantify the structural and morphological parameters of rocks directly and predict flow transport properties at the pore scale. Digital rock chemistry (DRC) or biology (DRB) applies when the changes in pore structures are due to interaction with solutes or microbial activities. Fluid–rock interactions or microbial activities complicate fl…

Sensitivity of Measurement-Based Purification Processes to Inner Interactions

2017

The sensitivity of a repeated measurement-based purification scheme to additional undesired couplings is analyzed, focusing on the very simple and archetypical system consisting of two two-level systems interacting with a repeatedly measured one. Several regimes are considered and in the strong coupling (i.e., when the coupling constant of the undesired interaction is very large) the occurrence of a quantum Zeno effect is proven to dramatically jeopardize the efficiency of the purification process.

Sensitivity to Initial Conditions in an Extended Activator--Inhibitor Model for the Formation of Patterns

2018

Despite simplicity, the synchronous cellular automaton [D.A. Young, Math. Biosci. 72, 51 (1984)] enables reconstructing basic features of patterns of skin. Our extended model allows studying the formatting of patterns and their temporal evolution also on the favourable and hostile environments. As a result, the impact of different types of an environment is accounted for the dynamics of patterns formation. The process is based on two diffusible morphogens, the short-range activator and the long-range inhibitor, produced by differentiated cells (DCs) represented as black pixels. For a neutral environment, the extended model reduces to the original one. However, even the reduced model is stat…

Noise effects in two different biological systems

2009

We investigate the role of the colored noise in two biological systems: (i) adults of Nezara viridula (L.) (Heteroptera: Pentatomidae), and (ii) polymer translocation. In the first system we analyze, by directionality tests, the response of N. viridula individuals to subthreshold signals plus noise in their mating behaviour. The percentage of insects that react to the subthreshold signal shows a nonmonotonic behaviour, characterized by the presence of a maximum, as a function of the noise intensity. This is the signature of the non-dynamical stochastic resonance phenomenon. By using a “soft” threshold model we find that the maximum of the input-output cross correlation occurs in the same ra…

Spatial recurrence strategies reveal different routes to Turing pattern formation in chemical systems

2009

We analyze the temporal evolution of hexagonal Turing patterns in two Belousov–Zhabotinsky reactions performed in water-in-oil reverse micro-emulsions under different experimental conditions. The two reactions show different routes to pattern formation through localized spots and through a self replication mechanism. The Generalized Recurrence Plot (GRP) and the Generalized Recurrence Quantification Analysis (GRQA) are used for the investigation of spatial patterns and clearly reveal the different routes leading to the formation of stationary Turing structures.

2017

Micro-fluidic pumps as well as artificial micro-swimmers are conveniently realized exploiting phoretic solvent flows based on local gradients of temperature, electrolyte concentration or pH. We here present a facile micro-photometric method for monitoring pH gradients and demonstrate its performance and scope on different experimental situations including an electro-osmotic pump and modular micro-swimmers assembled from ion exchange resin beads and polystyrene colloids. In combination with the present microscope and DSLR camera our method offers a 2 \mu m spatial resolution at video frame rate over a field of view of 3920x2602 \mu m^2. Under optimal conditions we achieve a pH-resolution of …

Non-isotopic DNA fingerprint analyses with the minisatellite probe MZ1.3

1990

RFLP analyses with minisatellite probes yield highly informative individual specific banding patterns (genetic fingerprints) (Jeffreys et al.). Because of the complexity of the pattern and marked differences in band intensities a good band resolution and high sensitivity of the probe are essential. By reason of the latter requirement to date most of the RFLP-studies are performed with radioactive probes. Although non-isotopic labels have been introduced into fingerprint analyses (Schafer et al.; Medeiros et al.) 32P-labeled probes are still superior with respect to sensitivity. Our approach to increase the specific signal intensity makes use of an amplification of the number of probe molecu…

Techniques for the measurement ofg-factors of nuclear states, their merits, limitations, sensitivity, etc.

1985

Synchronized rotation in swarms of magnetotactic bacteria.

2017

Self-organizing behavior has been widely reported in both natural and artificial systems, typically distinguishing between temporal organization (synchronization) and spatial organization (swarming). Swarming has been experimentally observed in systems of magnetotactic bacteria under the action of external magnetic fields. Here we present a model of ensembles of magnetotactic bacteria in which hydrodynamic interactions lead to temporal synchronization in addition to the swarming. After a period of stabilization during which the bacteria form a quasiregular hexagonal lattice structure, the entire swarm begins to rotate in a direction opposite to the direction of the rotation of the magnetic …

Maximizing the information gain of a single ion microscope using bayes experimental design

2016

We show nanoscopic transmission microscopy, using a deterministic single particle source and compare the resulting images in terms of signal-to-noise ratio, with those of conventional Poissonian sources. Our source is realized by deterministic extraction of laser-cooled calcium ions from a Paul trap. Gating by the extraction event allows for the suppression of detector dark counts by six orders of magnitude. Using the Bayes experimental design method, the deterministic characteristics of this source are harnessed to maximize information gain, when imaging structures with a parametrizable transmission function. We demonstrate such optimized imaging by determining parameter values of one and …