Search results for "COF"
showing 10 items of 757 documents
Optimizing management to enhance multifunctionality in a boreal forest landscape
2016
Summary The boreal biome, representing approximately one-third of remaining global forests, provides a number of crucial ecosystem services. A particular challenge in forest ecosystems is to reconcile demand for an increased timber production with provisioning of other ecosystem services and biodiversity. However, there is still little knowledge about how forest management could help solve this challenge. Hence, studies that investigate how to manage forests to reduce trade-offs between ecosystem services and biodiversity are urgently needed to help forest owners and policy makers take informed decisions. We applied seven alternative forest management regimes using a forest growth simulator…
Continuous cover forestry is a cost-efficient tool to increase multifunctionality of boreal production forests in Fennoscandia
2017
Abstract Earlier research has suggested that the diversification of silvicultural strategies is a cost-efficient tool to ensure multifunctionality in production forests. This study compared the effects of continuous cover forestry and conventional rotation forestry on ecosystem services and biodiversity in boreal forests in Finland. We simulated over 25,000 commercial forest stands for 100 years under continuous cover and rotation forest management. Forests without management were used as a reference. We compared the effects of silvicultural practices over space and time on ecosystem services, biodiversity indicators and multifunctionality. Our results revealed that continuous cover forestr…
Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae.
2020
In Rubiaceae phylogenetics, the number of markers often proved a limitation with authors failing to provide well-supported trees at tribal and generic levels. A robust phylogeny is a prerequisite to study the evolutionary patterns of traits at different taxonomic levels. Advances in next-generation sequencing technologies have revolutionized biology by providing, at reduced cost, huge amounts of data for an increased number of species. Due to their highly conserved structure, generally recombination-free, and mostly uniparental inheritance, chloroplast DNA sequences have long been used as choice markers for plant phylogeny reconstruction. The main objectives of this study are: 1) to gain in…
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.
2018
International audience; Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of conservation in plants. Whole chloroplast genomes can now be readily obtained for plant species using new sequencing methods, giving invaluable data for plant evolution However new annotation methods are required for the efficient analysis of this data to deliver high quality phylogenetic analyses. In this study, the two main tools for chloroplast genome annotation were compared. More consistent detection and annotation of genes were produced with GeSeq when compared to the currently used Dogma. This suggests that the annotation of most of the previously annotated chloroplast …
The bacterial microbiome of meloidogyne-based disease complex in coffee and tomato
2020
The Meloidogyne-based disease complexes (MDCs) are caused by the interaction of different root-knot nematode species and phytopathogenic fungi. These complexes are devastating several important crops worldwide including tomato and coffee. Despite their relevance, little is known about the role of the bacterial communities in the MDCs. In this study 16s rDNA gene sequencing was used to analyze the bacterial microbiome associated with healthy and infested roots, as well with females and eggs of Meloidogyne enterolobii and M. paranaensis, the causal agents of MDC in tomato and coffee, respectively. Each MDC pathosystems displayed a specific taxonomic diversity and relative abundances constitut…
Invasive bees and their impact on agriculture
2020
Fil: Aizen, Marcelo A. Universidad Nacional del Comahue. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Fil: Aizen, Marcelo A. Consejo Nacional de Investigaciones Científicas y Técnica. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Fil: Arbetman, Marina P. Universidad Nacional del Comahue. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Fil: Arbetman, Marina P. Consejo Nacional de Investigaciones Científicas y Técnica. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Fil: Chacoff, Natacha P. Universidad Nacional de Tucumán. Instituto de Ecología Regional; Argentina. Fil: Chalcoff, Vanin…
Rehabilitating boreal forest structure and species composition in Finland through logging, dead wood creation and fire: The EVO experiment
2007
This paper reviews an ongoing, large-scale multidisciplinary experiment designed to study the possibilities of rehabilitating forest structure and species composition through logging, dead wood creation and fire in managed Norway spruce (Picea abies) forests in southern Finland. These forests have been utilized for several centuries with intensive management and clear-cut harvesting, which has been the dominant practice in Finland since World War II. During this era, the forest structure has become relatively even-aged, and the amount of dead wood has been reduced considerably. Simultaneously, due to an effective fire suppression policy, the role of fire in Finnish nature has been almost co…
Purification and characterization of geranyl diphosphate synthase from Vitis vinifera L. cv Muscat de Frontignant cell cultures
1993
A geranyl diphosphate synthase (EC 2.5.1.1), which catalyzes the formation of geranyl diphosphate from dimethylallyl diphosphate and isopentenyl diphosphate, was isolated from Vitis vinifera L. cv Muscat de Frontignan cell cultures. Purification of the enzyme was achieved successively by ammonium sulfate precipitation and chromatography on DEAE-Sephacel, hydroxylapatite, Mono Q, Phenyl Superose, Superose 12, and preparative nondenaturing polyacrylamide gels. The enzyme formed only geranyl diphosphate as a product. In all cases, neither neryl diphosphate, the cis isomer, nor farnesyl diphosphate was detected. The enzyme showed a native molecular mass of 68 [plus or minus] 5 kD as determined …
Reducing the effect of beauvericin on neuroblastoma SH-SY5Y cell line by natural products
2020
Abstract In the present work, different natural compounds from coffee by-product extracts (coffee silverskin and spent coffee) rich in polyphenols, was investigated against beauvericin (BEA) induced-cytotoxicity on SH-SY5Y cells. Spent coffee arise as waste products through the production of instant coffee and coffee brewing; while the silverskin is a tegument which is removed and eliminated with toasting coffee grains. First of all, polyphenol extraction methods, measurement of total polyphenols content and its identification were carried out. Afterwards evaluating in vitro effects with MTT assay on SH-SY5Y cells of coffee by-product extracts and mycotoxins at different concentrations and …
Techniques to Analyze sRNA Protein Cofactor Self-Assembly In Vitro
2018
Post-transcriptional control of gene expression by small regulatory noncoding RNA (sRNA) needs protein accomplices to occur. Past research mainly focused on the RNA chaperone Hfq as cofactor. Nevertheless, recent studies indicated that other proteins might be involved in sRNA-based regulations. As some of these proteins have been shown to self-assemble, we describe in this chapter protocols to analyze the nano-assemblies formed. Precisely, we focus our analysis on Escherichia coli Hfq as a model, but the protocols presented here can be applied to analyze any polymer of proteins. This chapter thus provides a guideline to develop commonly used approaches to detect prokaryotic protein self-ass…