Search results for "CONST"

showing 10 items of 7706 documents

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

2012

Motivation The Burrows-Wheeler transform (BWT) is the foundation of many algorithms for compression and indexing of text data, but the cost of computing the BWT of very large string collections has prevented these techniques from being widely applied to the large sets of sequences often encountered as the outcome of DNA sequencing experiments. In previous work, we presented a novel algorithm that allows the BWT of human genome scale data to be computed on very moderate hardware, thus enabling us to investigate the BWT as a tool for the compression of such datasets. Results We first used simulated reads to explore the relationship between the level of compression and the error rate, the leng…

FOS: Computer and information sciencesStatistics and ProbabilityBurrows–Wheeler transformComputer scienceData_CODINGANDINFORMATIONTHEORYBurrows-Wheeler transformcomputer.software_genreBiochemistryBurrows-Wheeler transform; Data Compression; Next-generation sequencingComputer Science - Data Structures and AlgorithmsEscherichia coliCode (cryptography)HumansOverhead (computing)Data Structures and Algorithms (cs.DS)Computer SimulationQuantitative Biology - GenomicsMolecular BiologyGenomics (q-bio.GN)Genome HumanString (computer science)Search engine indexingSortingGenomicsSequence Analysis DNAConstruct (python library)Data CompressionComputer Science ApplicationsComputational MathematicsComputational Theory and MathematicsFOS: Biological sciencesNext-generation sequencingData miningDatabases Nucleic AcidcomputerAlgorithmsData compression
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Estimation of causal effects with small data in the presence of trapdoor variables

2021

We consider the problem of estimating causal effects of interventions from observational data when well-known back-door and front-door adjustments are not applicable. We show that when an identifiable causal effect is subject to an implicit functional constraint that is not deducible from conditional independence relations, the estimator of the causal effect can exhibit bias in small samples. This bias is related to variables that we call trapdoor variables. We use simulated data to study different strategies to account for trapdoor variables and suggest how the related trapdoor bias might be minimized. The importance of trapdoor variables in causal effect estimation is illustrated with rea…

FOS: Computer and information sciencesStatistics and ProbabilityEconomics and EconometricsbiascausalityComputer scienceBayesian probabilityContext (language use)01 natural sciencesStatistics - ComputationMethodology (stat.ME)010104 statistics & probability0504 sociologyEconometrics0101 mathematicsComputation (stat.CO)Statistics - MethodologyestimointiEstimationSmall databayesilainen menetelmä05 social sciences050401 social sciences methodsEstimatorBayesian estimationidentifiabilityConstraint (information theory)functional constraintConditional independencekausaliteettiObservational studyStatistics Probability and UncertaintySocial Sciences (miscellaneous)
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A New Nonparametric Estimate of the Risk-Neutral Density with Applications to Variance Swaps

2021

We develop a new nonparametric approach for estimating the risk-neutral density of asset prices and reformulate its estimation into a double-constrained optimization problem. We evaluate our approach using the S\&P 500 market option prices from 1996 to 2015. A comprehensive cross-validation study shows that our approach outperforms the existing nonparametric quartic B-spline and cubic spline methods, as well as the parametric method based on the Normal Inverse Gaussian distribution. As an application, we use the proposed density estimator to price long-term variance swaps, and the model-implied prices match reasonably well with those of the variance future downloaded from the CBOE websi…

FOS: Computer and information sciencesStatistics and ProbabilityVariance swapOptimization problemvariance swapStatistics - ApplicationsFOS: Economics and businessNormal-inverse Gaussian distributiondouble-constrained optimizationpricingEconometricsApplications (stat.AP)Asset (economics)normal inverse Gaussian distributionMathematicsParametric statisticslcsh:T57-57.97Applied MathematicsNonparametric statisticsEstimatorVariance (accounting)lcsh:Applied mathematics. Quantitative methodsPricing of Securities (q-fin.PR)risk-neutral densitylcsh:Probabilities. Mathematical statisticslcsh:QA273-280Quantitative Finance - Pricing of Securities
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Reliability analysis of processes with moving cracked material

2015

Abstract The reliability of processes with moving elastic and isotropic material containing initial cracks is considered in terms of fracture. The material is modelled as a moving plate which is simply supported from two of its sides and subjected to homogeneous tension acting in the travelling direction. For tension, two models are studied: (i) tension is constant with respect to time, and (ii) tension varies temporally according to an Ornstein–Uhlenbeck process. Cracks of random length are assumed to occur in the material according to a stochastic counting process. For a general counting process, a representation of the nonfracture probability of the system is obtained that exploits condi…

FOS: Computer and information sciencesStochastic modellingBoundary (topology)02 engineering and technologyComputational Engineering Finance and Science (cs.CE)0203 mechanical engineeringfirst passage timeComputer Science - Computational Engineering Finance and Sciencestochastic modelMathematics040101 forestryta214Counting processTension (physics)Applied Mathematicsta111Mathematical analysisIsotropyOrnstein–Uhlenbeck process04 agricultural and veterinary sciencesmoving material020303 mechanical engineering & transportsfractureModeling and Simulation0401 agriculture forestry and fisheriesOrnstein-Uhlenbeck processFirst-hitting-time modelConstant (mathematics)Applied Mathematical Modelling
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Binary jumbled string matching for highly run-length compressible texts

2012

The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s. Previous solutions created an index of size O(n) in a pre-processing step, which was then used to answer queries in constant time. The fastest algorithms for construction of this index have running time $O(n^2/\log n)$ [Burcsi et al., FUN 2010; Moosa and Rahman, IPL 2010], or $O(n^2/\log^2 n)$ in the word-RAM model [Moosa and Rahman, JDA 2012]. We propose an index constructed directly from the run-length encoding of $s$. The construction time of our index i…

FOS: Computer and information sciencesString algorithmsStructure (category theory)Binary numberG.2.1Data_CODINGANDINFORMATIONTHEORY0102 computer and information sciences02 engineering and technologyString searching algorithm01 natural sciencesComputer Science - Information RetrievalTheoretical Computer ScienceCombinatoricsdata structuresSimple (abstract algebra)Computer Science - Data Structures and AlgorithmsString algorithms; jumbled pattern matching; prefix normal form; data structures0202 electrical engineering electronic engineering information engineeringParikh vectorData Structures and Algorithms (cs.DS)Run-length encodingMathematics68W32 68P05 68P20String (computer science)prefix normal formSubstringComputer Science Applicationsjumbled pattern matching010201 computation theory & mathematicsData structureSignal ProcessingRun-length encoding020201 artificial intelligence & image processingConstant (mathematics)Information Retrieval (cs.IR)Information SystemsInformation Processing Letters
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Knowledge Base Approach for 3D Objects Detection in Point Clouds Using 3D Processing and Specialists Knowledge

2012

This paper presents a knowledge-based detection of objects approach using the OWL ontology language, the Semantic Web Rule Language, and 3D processing built-ins aiming at combining geometrical analysis of 3D point clouds and specialist's knowledge. Here, we share our experience regarding the creation of 3D semantic facility model out of unorganized 3D point clouds. Thus, a knowledge-based detection approach of objects using the OWL ontology language is presented. This knowledge is used to define SWRL detection rules. In addition, the combination of 3D processing built-ins and topological Built-Ins in SWRL rules allows a more flexible and intelligent detection, and the annotation of objects …

FOS: Computer and information sciencesTopologic analysisComputer Science - Artificial IntelligenceSemantic facility information modelGeometric analysis[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]Artificial Intelligence (cs.AI)3D processing algorithmSemantic VRML modelknowledge modelingontology3D scene reconstructionobject identification[ INFO.INFO-AI ] Computer Science [cs]/Artificial Intelligence [cs.AI]Semantic web
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Statistical Performance Analysis of a Fast Super-Resolution Technique Using Noisy Translations.

2014

It is well known that the registration process is a key step for super-resolution reconstruction. In this work, we propose to use a piezoelectric system that is easily adaptable on all microscopes and telescopes for controlling accurately their motion (down to nanometers) and therefore acquiring multiple images of the same scene at different controlled positions. Then a fast super-resolution algorithm \cite{eh01} can be used for efficient super-resolution reconstruction. In this case, the optimal use of $r^2$ images for a resolution enhancement factor $r$ is generally not enough to obtain satisfying results due to the random inaccuracy of the positioning system. Thus we propose to take seve…

FOS: Computer and information sciences[ INFO.INFO-TS ] Computer Science [cs]/Signal and Image ProcessingPositioning systemComputer scienceComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONsuper-resolution02 engineering and technologyIterative reconstructionMethodology (stat.ME)[INFO.INFO-TS]Computer Science [cs]/Signal and Image ProcessingPosition (vector)[ INFO.INFO-TI ] Computer Science [cs]/Image Processing0202 electrical engineering electronic engineering information engineeringComputer visionImage resolutionStatistics - Methodologyerror analysis[STAT.AP]Statistics [stat]/Applications [stat.AP]business.industryreconstruction algorithms[ STAT.AP ] Statistics [stat]/Applications [stat.AP]Process (computing)high-resolution imaging020206 networking & telecommunicationsFunction (mathematics)Computer Graphics and Computer-Aided DesignSuperresolutionperformance evaluation[INFO.INFO-TI]Computer Science [cs]/Image Processing [eess.IV]microscopy020201 artificial intelligence & image processingAlgorithm designArtificial intelligencebusinessSoftwareIEEE transactions on image processing : a publication of the IEEE Signal Processing Society
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Completely independent spanning trees in some regular graphs

2014

International audience; Let k >= 2 be an integer and T-1,..., T-k be spanning trees of a graph G. If for any pair of vertices {u, v} of V(G), the paths between u and v in every T-i, 1 <= i <= k, do not contain common edges and common vertices, except the vertices u and v, then T1,... Tk are completely independent spanning trees in G. For 2k-regular graphs which are 2k-connected, such as the Cartesian product of a complete graph of order 2k-1 and a cycle, and some Cartesian products of three cycles (for k = 3), the maximum number of completely independent spanning trees contained in these graphs is determined and it turns out that this maximum is not always k. (C) 2016 Elsevier B.V. All righ…

FOS: Computer and information sciences[ MATH ] Mathematics [math]Discrete Mathematics (cs.DM)Small Depths0102 computer and information sciences02 engineering and technology[INFO.INFO-DM]Computer Science [cs]/Discrete Mathematics [cs.DM]01 natural sciencesCombinatoricssymbols.namesakeCompletely independent spanning treeFOS: Mathematics0202 electrical engineering electronic engineering information engineeringCartesian productDiscrete Mathematics and CombinatoricsMathematics - Combinatorics[MATH]Mathematics [math]MathematicsConstructionSpanning treeSpanning treeApplied MathematicsComplete graph020206 networking & telecommunications[ INFO.INFO-DM ] Computer Science [cs]/Discrete Mathematics [cs.DM]Cartesian productIndependent spanning treesGraphPlanar graphPlanar Graphs010201 computation theory & mathematicssymbolsCompletely independent spanning tree.Combinatorics (math.CO)Computer Science - Discrete Mathematics
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Complete End-To-End Low Cost Solution To a 3D Scanning System with Integrated Turntable

2017

3D reconstruction is a technique used in computer vision which has a wide range of applications in areas like object recognition, city modelling, virtual reality, physical simulations, video games and special effects. Previously, to perform a 3D reconstruction, specialized hardwares were required. Such systems were often very expensive and was only available for industrial or research purpose. With the rise of the availability of high-quality low cost 3D sensors, it is now possible to design inexpensive complete 3D scanning systems. The objective of this work was to design an acquisition and processing system that can perform 3D scanning and reconstruction of objects seamlessly. In addition…

FOS: Computer and information sciencesbusiness.industryComputer scienceComputer Vision and Pattern Recognition (cs.CV)3D reconstructionComputer Science - Computer Vision and Pattern Recognition0211 other engineering and technologiesProcess (computing)Point cloud020207 software engineering02 engineering and technologyProcessingVirtual realitySoftware0202 electrical engineering electronic engineering information engineeringTable (database)businesscomputerComputer hardware021106 design practice & managementcomputer.programming_languageGraphical user interface
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Magnetic and electronic properties of double perovskites and estimation of their Curie temperatures byab initiocalculations

2008

First principles electronic structure calculations have been carried out on ordered double perovskites Sr_2B'B"O_6 (for B' = Cr or Fe and B" 4d and 5d transition metal elements) with increasing number of valence electrons at the B-sites, and on Ba_2MnReO_6 as well as Ba_2FeMoO_6. The Curie temperatures are estimated ab initio from the electronic structures obtained with the local spin-density functional approximation, full-potential generalized gradient approximation and/or the LDA+U method (U - Hubbard parameter). Frozen spin-spirals are used to model the excited states needed to evaluate the spherical approximation for the Curie temperatures. In cases, where the induced moments on the oxy…

FOS: Physical sciences02 engineering and technologyElectronic structure01 natural sciencesCondensed Matter::Materials ScienceCurie's lawAb initio quantum chemistry methods0103 physical sciences010306 general physicsPhysicsCondensed Matter - Materials ScienceCurie–Weiss lawCondensed matter physicsMaterials Science (cond-mat.mtrl-sci)021001 nanoscience & nanotechnologyCondensed Matter Physics3. Good healthElectronic Optical and Magnetic MaterialsCondensed Matter - Other Condensed MatterCurie temperatureCondensed Matter::Strongly Correlated ElectronsCurie constantLocal-density approximation0210 nano-technologyValence electronOther Condensed Matter (cond-mat.other)Physical Review B
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