Search results for "Chloroplast"

showing 10 items of 145 documents

A Janus-Faced IM30 Ring Involved in Thylakoid Membrane Fusion Is Assembled from IM30 Tetramers.

2017

Summary Biogenesis and dynamics of thylakoid membranes likely involves membrane fusion events. Membrane attachment of the inner membrane-associated protein of 30 kDa (IM30) affects the structure of the lipid bilayer, finally resulting in membrane fusion. Yet, how IM30 triggers membrane fusion is largely unclear. IM30 monomers pre-assemble into stable tetrameric building blocks, which further align to form oligomeric ring structures, and differently sized IM30 rings bind to membranes. Based on a 3D reconstruction of IM30 rings, we locate the IM30 loop 2 region at the bottom of the ring and show intact membrane binding but missing fusogenic activity of loop 2 mutants. However, helix 7, which …

0301 basic medicineModels MolecularChemistryPeripheral membrane proteinLipid bilayer fusionBiological membraneMembrane FusionThylakoidsTransmembrane protein03 medical and health sciencesCrystallographyChloroplast Proteins030104 developmental biologyMembraneStructural BiologyMembrane biogenesisLiposomesBiophysicsProtein MultimerizationLipid bilayerMolecular BiologyIntegral membrane proteinProtein BindingStructure (London, England : 1993)
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Different rates of spontaneous mutation of chloroplastic and nuclear viroids as determined by high-fidelity ultra-deep sequencing

2017

[EN] Mutation rates vary by orders of magnitude across biological systems, being higher for simpler genomes. The simplest known genomes correspond to viroids, subviral plant replicons constituted by circular non-coding RNAs of few hundred bases. Previous work has revealed an extremely high mutation rate for chrysanthemum chlorotic mottle viroid, a chloroplastreplicating viroid. However, whether this is a general feature of viroids remains unclear. Here, we have used high-fidelity ultra-deep sequencing to determine the mutation rate in a common host (eggplant) of two viroids, each representative of one family: the chloroplastic eggplant latent viroid (ELVd, Avsunviroidae) and the nuclear pot…

0301 basic medicineMutation rateChloroplastsViroidvirusesPospiviroidaeArtificial Gene Amplification and ExtensionPlant ScienceSelf-CleavageVirus ReplicationBiochemistryPolymerase Chain ReactionGenomeDatabase and Informatics MethodsSequencing techniquesRibozymeNucleic AcidsRibozymesBiology (General)GeneticsHigh-Throughput Nucleotide Sequencingfood and beveragesRNA sequencingViroidsEnzymesAvsunviroidaeDeletion MutationVirusesPhysical SciencesRNA ViralIn-VivoSequence AnalysisResearch ArticleSubstitution MutationHammerhead RibozymesQH301-705.5Materials by StructureBioinformaticsEvolutionMaterials ScienceImmunologyPlant PathogensGenerationReplicationBiologyMicrobiology03 medical and health sciencesSequence Motif AnalysisVirologyGeneticsSolanum melongenaRNA-PolymeraseMolecular BiologyPotato spindle tuber viroidPlant DiseasesMatter030102 biochemistry & molecular biologyPoint mutationOrganismsBiology and Life SciencesProteinsRNAReverse Transcriptase-Polymerase Chain ReactionRC581-607Plant Pathologybiology.organism_classificationVirologyResearch and analysis methodsMolecular biology techniques030104 developmental biologyMutagenesisOligomersMutationEnzymologyRNAMotifParasitologyImmunologic diseases. AllergyPLOS Pathogens
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On the origin of mitosing cells: A historical appraisal of Lynn Margulis endosymbiotic theory

2017

Although for a long-time symbiosis was considered to be quite rare and with no role in evolutionary processes, Lynn Margulis demonstrated that endosymbiotic events played a key role in the origin and evolution of eukaryotic cells. Starting with her seminal assay in the Journal of Theoretical Biology in 1967 (authored as Lynn Sagan), her lifelong work on eukaryogenesis and the role of symbiosis in evolution stands as a valid and authoritative contribution to science. As was quick to acknowledge, she was not the first to discuss the significance of symbiosis to explain the origin of mitochondria and chloroplasts, but no one else had done it to her extent and depth, nor had anyone provided a v…

0301 basic medicineStatistics and ProbabilitySymbiogenesisChloroplastsBiologyGenomeGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciences0302 clinical medicineSymbiosisSymbiosisGeneticsGenomeGeneral Immunology and MicrobiologyApplied MathematicsEukaryotaGeneral MedicineBiological evolutionHistory 20th CenturyBiological EvolutionMitochondria030104 developmental biologyEvolutionary biologyModeling and SimulationGeneral Agricultural and Biological SciencesMetabolic Networks and Pathways030217 neurology & neurosurgeryJournal of Theoretical Biology
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Bacterial antisense RNAs are mainly the product of transcriptional noise

2015

Most of the antisense transcripts in bacteria are the product of transcriptional noise derived from spurious promoters.

0301 basic medicineTranscription GeneticBacterial antisense RNAs030106 microbiologyinformation scienceBiologyGenomeTranscriptome03 medical and health sciencesSpecies SpecificityTranscription (biology)medicineLife Sciencenatural sciencesRNA AntisenseSystems and Synthetic BiologyResearch ArticlesGeneticsBiomoleculesMessenger RNASysteem en Synthetische BiologieMultidisciplinaryRNASciAdv r-articlesPromotersocial sciencesmedicine.diseaseequipment and supplieshealth care quality access and evaluationChloroplastRNA BacterialCardiovascular and Metabolic Diseasesbacterial antisense RNAsRNATranscriptomeTranscriptional noiseResearch ArticleScience Advances
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Über den Ureidstoffwechsel beim Laubmoosprotonema von Funaria hygrometrica L. (Sibth.)

1973

Summary 1. Allantoin and allantoic acid were about 6 % of the total nitrogen content of moss protonema (Funaria hygrornetica L.). 2. The level of endogenous allantoin depends on the spectrum colour of the irradiation. The peaks coincide with the peaks of a chlorophyll absorption spectrum from a methanolic extract of moss protonema. 3. The total amount of allan to in consists of two parts. One part is supplied by metabolism in darkness but the main one depends on light. Green- and far red light are “physiological dark conditions” for the moss protonema. In the dark ureide degradation comes to an end with allantoic acid. There are only traces of urea. 4. The coinciding correlations between th…

Allantoic acidbiologyDCMUFar-redGeneral MedicineGeneral Chemistrybiology.organism_classificationChloroplastchemistry.chemical_compoundAllantoinchemistryBiochemistryFunariaChlorophyllBotanyProtonemaBiochemie und Physiologie der Pflanzen
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Ancestral Reconstruction and Investigations of Genomic Recombination on some Pentapetalae Chloroplasts

2019

Abstract In this article, we propose a semi-automated method to rebuild genome ancestors of chloroplasts by taking into account gene duplication. Two methods have been used in order to achieve this work: a naked eye investigation using homemade scripts, whose results are considered as a basis of knowledge, and a dynamic programming based approach similar to Needleman-Wunsch. The latter fundamentally uses the Gestalt pattern matching method of sequence matcher to evaluate the occurrences probability of each gene in the last common ancestor of two given genomes. The two approaches have been applied on chloroplastic genomes from Apiales, Asterales, and Fabids orders, the latter belonging to Pe…

Ancestral reconstructionMost recent common ancestor0206 medical engineeringGenomic recombination02 engineering and technology[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Dynamic programmingGenome[INFO.INFO-IU]Computer Science [cs]/Ubiquitous ComputingEvolution Molecular[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]AsteralesGene duplication0202 electrical engineering electronic engineering information engineeringPattern matchingGenome ChloroplastRosaceaeResearch ArticlesPhylogenySequence (medicine)Recombination GeneticbiologyGeneral Medicinebiology.organism_classification[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationAncestral genome reconstructionApialesEvolutionary biology[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]020201 artificial intelligence & image processing[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Pentapetalae chloroplasts020602 bioinformaticsTP248.13-248.65BiotechnologyJournal of Integrative Bioinformatics
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Reciprocal hybridization at different times between Senecio flavus and Senecio glaucus gave rise to two polyploid species in north Africa and south‐w…

2006

Summary • The analysis of hybrid plant taxa using molecular methods has considerably extended understanding of possible pathways of hybrid evolution. • Here, we investigated the origin of the tetraploid Senecio mohavensis ssp. breviflorus and the hexaploid Senecio hoggariensis by sequencing of nuclear and chloroplast DNA, and by analysis of the distribution of taxon-specific amplified fragment length polymorphism (AFLP) fragments. • Both taxa originated from hybridization between the diploid Senecio flavus and Senecio glaucus. Whereas S. glaucus was the female parent in the origin of S. mohavensis ssp. breviflorus, S. flavus was the female parent in the origin of S. hoggariensis. • The dist…

AsiaDNA PlantbiologyGenetic SpeciationPhysiologyfungifood and beveragesIntrogressionPlant ScienceSeneciobiology.organism_classificationSenecio glaucusPolyploidyChloroplast DNAPolyploidAfricaBotanyHybridization GeneticDNA IntergenicSenecioAmplified fragment length polymorphismPloidySenecio mohavensisPhylogenyNew Phytologist
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Study of surface carbohydrates on isolated Golgi subfractions by fluorescent-lectin binding and flow cytometry

1995

The Golgi complex is a functionally heterogeneous subcellular structure that plays a key role in the synthesis, maturation, and sorting of newly synthesized glycoproteins. Fluorescent lectins have been used extensively to analyze surface glycoproteins by flow cytometry in whole cells and more recently in isolated subcellular organelles, such as mitochondria and chloroplasts. We report here the use of several fluorescein-isothiocyanate-conjugated lectins to detect and quantify specific surface sugars by flow cytometry on isolated elements from purified cis and trans-Golgi fractions from rat liver. Our results show that this approach may be useful to study Golgi composition and function, sinc…

CarbohydratesBiophysicsGolgi ApparatusPathology and Forensic MedicineFlow cytometrysymbols.namesakeEndocrinologyIsothiocyanatesLectinsOrganellemedicineAnimalsRats WistarFluorescent Dyeschemistry.chemical_classificationMembrane Glycoproteinsbiologymedicine.diagnostic_testIntracellular MembranesCell BiologyHematologyGolgi apparatusFlow CytometryWheat germ agglutininRatsChloroplastLiverBiochemistrychemistryConcanavalin Asymbolsbiology.proteinGlycoproteinFunction (biology)Protein BindingCytometry
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Organization of the pigment molecules in the chlorophyll a/c light-harvesting complex of Pleurochloris meiringensis (xanthophyceae). Characterization…

1997

Abstract By the aid of circular dichroism (CD), absorbance and fluorescence spectroscopy, we studied the molecular organization of the pigment molecules in cells, isolated chloroplasts and the chlorophyll a / c light-harvesting complex (LHC) associated with photosystem II of the chlorphyll c -containing alga, Pleurochloris meiringensis . In cells and chloroplasts, similarly to higher plant chloroplasts, a (+) 693 nm CD band accompanied by a tail outside the absorbance indicated a long-range chiral organization of the chlorophyll molecules. The LHCII of these algae exhibited an intense negative CD band at 679 nm. However, in contrast to the chlorophyll a / b LHCII of higher plants, where the…

Chlorophyll aCircular dichroismRadiationRadiological and Ultrasound TechnologyPhotosystem IIBiophysicsfood and beveragesLight-harvesting complexes of green plantsPhotochemistryChloroplastAbsorbanceLight-harvesting complexchemistry.chemical_compoundchemistryChlorophyllRadiology Nuclear Medicine and imagingJournal of Photochemistry and Photobiology B: Biology
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The Effect of Different Light Intensities on the Frequency and Size of Stomata, the Size of Cells, the Number, Size and Chlorophyll Content of Chloro…

1980

Summary Plants of Sinapis alba were cultivated under high light (60 W m -2 PhAR) and low light (6 W m -2 PhAR) conditions. High light intensity during growth increased the stomatal frequency but there were only small changes in the length of the stomatal pore. High-light leaves had more than twice as many stomata per unit area as low-light leaves. The decrease of stomatal diffusive resistance in high-light leaves is primarily caused by the increase in stomatal density. There were striking changes in stomatal frequency during the ontogeny of primary leaves. High light caused a stronger development of the assimilating mesophyll. The volume of the palisade cells increased to a much higher exte…

Chlorophyll bChlorophyll aGeneral MedicineBiologyPhotosynthesisPalisade cellChloroplastchemistry.chemical_compoundLight intensityHorticulturechemistryChlorophyllGuard cellBotanyZeitschrift für Pflanzenphysiologie
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