Search results for "Cluster computing"

showing 10 items of 120 documents

Simulation-based estimation of branching models for LTR retrotransposons

2017

Abstract Motivation LTR retrotransposons are mobile elements that are able, like retroviruses, to copy and move inside eukaryotic genomes. In the present work, we propose a branching model for studying the propagation of LTR retrotransposons in these genomes. This model allows us to take into account both the positions and the degradation level of LTR retrotransposons copies. In our model, the duplication rate is also allowed to vary with the degradation level. Results Various functions have been implemented in order to simulate their spread and visualization tools are proposed. Based on these simulation tools, we have developed a first method to evaluate the parameters of this propagation …

0301 basic medicineStatistics and ProbabilitySource codeTheoretical computer scienceRetroelementsmedia_common.quotation_subjectRetrotransposon[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]BiologyBiochemistryGenomeChromosomesBranching (linguistics)[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing03 medical and health sciences[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]SoftwareAnimalsComputer SimulationMolecular BiologyComputingMilieux_MISCELLANEOUSmedia_commoncomputer.programming_languageGeneticsGenomeModels Geneticbusiness.industry[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]Python (programming language)[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM][INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationComputer Science ApplicationsVisualizationComputational Mathematics030104 developmental biologyDrosophila melanogasterComputational Theory and Mathematics[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Programming Languages[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]Mobile genetic elements[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]businesscomputerSoftware
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Cimo: An efficient 2-phases calculator of multimodal itineraries for real trans-territories based on a dynamic programming

2015

In this work we propose an exact solution for calculating multimodal itinerary. This solution is named Cimo (Calculateur d'Itineraires Multimodaux Ordonnes). Cimo is an exact optimal itineraries' calculator wherein itineraries are sorted, multimodal, and trans-territorial. The solution is based on a dynamic programming algorithm "cut", "price" and "share". This solution is multi-objectives and multi-constraints. Several versions of this algorithm are proposed following a methodological approach that enables evaluation of efficiency and complexity's gain : through theoretical calculus and benchmarks. In the first version of realistic problem, we propose a solution with itineraries calculated…

050210 logistics & transportationScheduleTheoretical computer scienceDegree (graph theory)Hierarchy (mathematics)Computer scienceModulo05 social sciencesContext (language use)02 engineering and technology[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE][INFO.INFO-MO]Computer Science [cs]/Modeling and Simulationlaw.inventionDynamic programming[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]Calculatorlaw[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]0502 economics and business0202 electrical engineering electronic engineering information engineering020201 artificial intelligence & image processing[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]
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"Table 5" of "Search for heavy charged long-lived particles in the ATLAS detector in 31.6 fb$^{-1}$ of proton-proton collision data at $\sqrt{s} = 13…

2019

Expected signal yield and acceptance x efficiency, estimated background and observed number of events in data for the full range of simulated masses in the full-detector R-hadron search.

13000.0Proton-Proton ScatteringLLPP P --> GLUINO GLUINOP P --> SQUARK+ SQUARK-EFFSUSYHigh Energy Physics::ExperimentComputer Science::Symbolic ComputationSupersymmetryNACCComputer Science::Distributed Parallel and Cluster Computing
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"Table 5" of "Search for heavy charged long-lived particles in the ATLAS detector in 31.6 fb$^{-1}$ of proton-proton collision data at $\sqrt{s} = 13…

2019

Expected signal yield and acceptance x efficiency, estimated background and observed number of events in data for the full range of simulated masses in the full-detector R-hadron search.

13000.0Proton-Proton ScatteringLLPP P --> GLUINO GLUINOP P --> SQUARK+ SQUARK-EFFSUSYHigh Energy Physics::ExperimentComputer Science::Symbolic ComputationSupersymmetryNACCComputer Science::Distributed Parallel and Cluster Computing
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"Table 20" of "Measurement of event shape and inclusive distributions at s**(1/2) = 130-GeV and 136-GeV."

1997

3-jet rate for the Durham Algorithm.

133.0E+ E- --> 3JETAstrophysics::High Energy Astrophysical PhenomenaE+ E- ScatteringIntegrated Cross SectionExclusiveHigh Energy Physics::ExperimentJet ProductionCross SectionSIGComputer Science::Distributed Parallel and Cluster Computing
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A distributed real-time data prediction and adaptive sensing approach for wireless sensor networks

2018

International audience; Many approaches have been proposed in the literature to reduce energy consumption in Wireless Sensor Networks (WSNs). Influenced by the fact that radio communication and sensing are considered to be the most energy consuming activities in such networks. Most of these approaches focused on either reducing the number of collected data using adaptive sampling techniques or on reducing the number of data transmitted over the network using prediction models. In this article, we propose a novel prediction-based data reduction method. furthermore, we combine it with an adaptive sampling rate technique, allowing us to significantly decrease energy consumption and extend the …

Adaptive samplingComputer Networks and CommunicationsComputer scienceReal-time computing[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]02 engineering and technology[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]0202 electrical engineering electronic engineering information engineeringReal-time dataWork (physics)020206 networking & telecommunicationsEnergy consumption[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationComputer Science Applications[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Hardware and Architecture[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]020201 artificial intelligence & image processing[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Wireless sensor networkSoftwarePredictive modellingEnergy (signal processing)Information SystemsData reductionPervasive and Mobile Computing
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Ancestral Reconstruction and Investigations of Genomic Recombination on some Pentapetalae Chloroplasts

2019

Abstract In this article, we propose a semi-automated method to rebuild genome ancestors of chloroplasts by taking into account gene duplication. Two methods have been used in order to achieve this work: a naked eye investigation using homemade scripts, whose results are considered as a basis of knowledge, and a dynamic programming based approach similar to Needleman-Wunsch. The latter fundamentally uses the Gestalt pattern matching method of sequence matcher to evaluate the occurrences probability of each gene in the last common ancestor of two given genomes. The two approaches have been applied on chloroplastic genomes from Apiales, Asterales, and Fabids orders, the latter belonging to Pe…

Ancestral reconstructionMost recent common ancestor0206 medical engineeringGenomic recombination02 engineering and technology[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Dynamic programmingGenome[INFO.INFO-IU]Computer Science [cs]/Ubiquitous ComputingEvolution Molecular[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]AsteralesGene duplication0202 electrical engineering electronic engineering information engineeringPattern matchingGenome ChloroplastRosaceaeResearch ArticlesPhylogenySequence (medicine)Recombination GeneticbiologyGeneral Medicinebiology.organism_classification[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationAncestral genome reconstructionApialesEvolutionary biology[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]020201 artificial intelligence & image processing[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Pentapetalae chloroplasts020602 bioinformaticsTP248.13-248.65BiotechnologyJournal of Integrative Bioinformatics
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A Hardware and Secure Pseudorandom Generator for Constrained Devices

2018

Hardware security for an Internet of Things or cyber physical system drives the need for ubiquitous cryptography to different sensing infrastructures in these fields. In particular, generating strong cryptographic keys on such resource-constrained device depends on a lightweight and cryptographically secure random number generator. In this research work, we have introduced a new hardware chaos-based pseudorandom number generator, which is mainly based on the deletion of an Hamilton cycle within the $N$ -cube (or on the vectorial negation), plus one single permutation. We have rigorously proven the chaotic behavior and cryptographically secure property of the whole proposal: the mid-term eff…

Applied cryptography; Chaotic circuits; Constrained devices; Discrete dynamical systems; FPGA; Lightweight Cryptography; Random number generators; Statistical tests; Control and Systems Engineering; Information Systems; Computer Science Applications1707 Computer Vision and Pattern Recognition; Electrical and Electronic EngineeringHardware security moduleComputer scienceRandom number generationCryptography[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]02 engineering and technologyPseudorandom generatorConstrained devicesLightweight CryptographyChaotic circuits[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]PermutationRandom number generatorsStatistical tests0202 electrical engineering electronic engineering information engineeringElectrical and Electronic EngineeringField-programmable gate arrayThroughput (business)FPGAPseudorandom number generatorGenerator (category theory)business.industry020208 electrical & electronic engineeringComputer Science Applications1707 Computer Vision and Pattern Recognition020206 networking & telecommunicationsDiscrete dynamical systems[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationComputer Science ApplicationsApplied cryptography[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Control and Systems EngineeringKey (cryptography)[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]businessComputer hardwareInformation SystemsIEEE Transactions on Industrial Informatics
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Efficient distributed average consensus in wireless sensor networks

2020

International audience; Computing the distributed average consensus in Wireless Sensor Networks (WSNs) is investigated in this article. This problem, which is both natural and important, plays a significant role in various application fields such as mobile agents and fleet vehicle coordination, network synchronization, distributed voting and decision, load balancing of divisible loads in distributed computing network systems, and so on. By and large, the average consensus' objective is to have all nodes in the network converged to the average value of the initial nodes' measurements based only on local nodes' information states. In this paper, we introduce a fully distributed algorithm to a…

AtomicitySpeedupComputer Networks and CommunicationsSynchronization networksComputer sciencebusiness.industry020206 networking & telecommunications[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]02 engineering and technologyEnergy consumptionLoad balancing (computing)[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]Consensus[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Distributed algorithm0202 electrical engineering electronic engineering information engineering[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]020201 artificial intelligence & image processing[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]businessWireless sensor networkComputer networkComputer Communications
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Construction of Disjoint Virtual Backbones for Wireless Sensor Networks

2020

A wireless sensor network is a wireless network of sensors aimed at monitoring physical events. It has ingratiated itself into almost all areas of human endeavors. Data dissemination in these networks is quite challenging and is generally accomplished by flooding. But flooding introduces broadcast storm problem due from implosion and overlap. To overcome this, topology management can prescribe a virtual backbone network to which routing is confined. In this paper we propose an algorithm that constructs multiple disjoint virtual backbone networks, using only nodes' locations. The disjointedness makes routing more robust and the network exploitation energy efficient. Simulations show our algo…

Backbone networkWireless networkbusiness.industryComputer scienceComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS05 social sciences030204 cardiovascular system & hematologyConnected dominating setFlooding (computer networking)03 medical and health sciences[INFO.INFO-NI]Computer Science [cs]/Networking and Internet Architecture [cs.NI]0302 clinical medicine0502 economics and business050211 marketingRouting (electronic design automation)[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Broadcast radiationbusinessWireless sensor networkDisseminationComputingMilieux_MISCELLANEOUSComputer network
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