Search results for "DATABASES"
showing 10 items of 937 documents
Molecular surveillance of norovirus, 2005–16 : an epidemiological analysis of data collected from the NoroNet network
2018
BACKGROUND: The development of a vaccine for norovirus requires a detailed understanding of global genetic diversity of noroviruses. We analysed their epidemiology and diversity using surveillance data from the NoroNet network.METHODS: We included genetic sequences of norovirus specimens obtained from outbreak investigations and sporadic gastroenteritis cases between 2005 and 2016 in Europe, Asia, Oceania, and Africa. We genotyped norovirus sequences and analysed sequences that overlapped at open reading frame (ORF) 1 and ORF2. Additionally, we assessed the sampling date and country of origin of the first reported sequence to assess when and where novel drift variants originated.FINDINGS: W…
Surface-plasmon hopping along coupled coplanar cavities
2007
International audience; We report on surface-plasmon propagation along coupled coplanar cavities periodically distributed in an otherwise unperturbed plasmonic crystal. We show that the dispersion of particular Bloch modes can exhibit multiple energy gaps that can be adjusted by choosing the cavity size. For resonant sizes, the composite crystals composed of juxtaposed cavities can support plasmon modes at frequencies within the gap of the unperturbed grating. In this case, we demonstrate that the surface-plasmon propagation relies on a hopping mechanism.
Circumstantial Evidence for Rotating Mass Matrix from Fermion Mass and Mixing Data
2002
It is shown that existing data on the mixing between up and down fermion states and on the hierarchical mass ratios between fermion generations, as far as can be so analysed at present, are all consistent with the two phenomena being both consequences of a mass matrix rotating in generation space with changing energy scale. As a result, the rotating mass matrix can be traced over some 14 orders of magnitude in energy from the mass scale of the $t$-quark at 175 GeV to below that of the atmospheric neutrino at 0.05 eV.
Principal component analysis on molecular descriptors as an alternative point of view in the search of new Hsp90 inhibitors
2009
Inhibiting a protein that regulates multiple signal transduction pathways in cancer cells is an attractive goal for cancer therapy. Heat shock protein 90 (Hsp90) is one of the most promising molecular targets for such an approach. In fact, Hsp90 is a ubiquitous molecular chaperone protein that is involved in folding, activating and assembling of many key mediators of signal transduction, cellular growth, differentiation, stress-response and apoptothic pathways. With the aim to analyze which molecular descriptors have the higher importance in the binding interactions of these classes, we first performed molecular docking experiments on the 187 Hsp90 inhibitors included in the BindingDB, a pu…
Next-generation sequencing: big data meets high performance computing
2017
The progress of next-generation sequencing has a major impact on medical and genomic research. This high-throughput technology can now produce billions of short DNA or RNA fragments in excess of a few terabytes of data in a single run. This leads to massive datasets used by a wide range of applications including personalized cancer treatment and precision medicine. In addition to the hugely increased throughput, the cost of using high-throughput technologies has been dramatically decreasing. A low sequencing cost of around US$1000 per genome has now rendered large population-scale projects feasible. However, to make effective use of the produced data, the design of big data algorithms and t…
Process specification and verification
1996
Graph grammars provide a very convenient specification tool for distributed systems of processes. This paper addresses the problem how properties of such specifications can be proven. It shows a connection between algebraic graph rewrite rules and temporal (trace) logic via the graph expressions of [2]. Statements concerning the global behavior can be checked by local reasoning.
epiPATH: an information system for the storage and management of molecular epidemiology data from infectious pathogens.
2007
Abstract Background Most research scientists working in the fields of molecular epidemiology, population and evolutionary genetics are confronted with the management of large volumes of data. Moreover, the data used in studies of infectious diseases are complex and usually derive from different institutions such as hospitals or laboratories. Since no public database scheme incorporating clinical and epidemiological information about patients and molecular information about pathogens is currently available, we have developed an information system, composed by a main database and a web-based interface, which integrates both types of data and satisfies requirements of good organization, simple…
New insights into the gut microbiome in loggerhead sea turtles Caretta caretta stranded on the Mediterranean coast
2019
Caretta caretta is the most common sea turtle species in the Mediterranean Sea. The species is threatened by anthropomorphic activity that causes thousands of deaths and hundreds of strandings along the Mediterranean coast. Stranded turtles are often cared for in rehabilitation centres until they recover or die. The objective of this study was to characterize the gut microbiome of nine sea turtles stranded along the Sicilian coast of the Mediterranean Sea using high-throughput sequencing analysis targeting V3–V4 regions of the bacterial 16S rRNA gene. Stool samples were collected from eight specimens hosted in the recovery centre after a few days of hospitalization (under 7) and from one ho…
Predictors of complications and mortality following left colectomy with primary stapled anastomosis for cancer: results of a multicentric study with …
2018
Aim Reports detailing the morbidity-mortality after left colectomy are sparse and do not allow definitive conclusions to be drawn. We aimed to identify risk factors for anastomotic leakage, perioperative mortality and complications following left colectomy for colonic malignancies. Method We undertook a STROBE-compliant analysis of left colectomies included in a national prospective online database. Forty-two variables were analysed as potential independent risk factors for anastomotic leakage, postoperative morbidity and mortality. Variables were selected using the 'least absolute shrinkage and selection operator' (LASSO) method. Results We analysed 1111 patients. Eight per cent of patient…
Une plateforme haute performance pour l’exploitation des données massives - Application aux données des réseaux sociaux
2019
International audience