Search results for "Databases"
showing 10 items of 937 documents
Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?
2014
In this study, the evaluation of soil characteristics was coupled with a pyrosequencing analysis of the V2-V3 16S rRNA gene region in order to investigate the bacterial community structure and diversity in the A horizon of a natural saline soil located in Sicily (Italy). The main aim of the research was to assess the organisation and diversity of microbial taxa using a spatial scale that revealed physical and chemical heterogeneity of the habitat under investigation. The results provided information on the type of distribution of different bacterial groups as a function of spatial gradients of soil salinity and pH. The analysis of bacterial 16S rRNA showed differences in bacterial compositi…
De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome
2013
Olive breeding programmes are focused on selecting for traits as short juvenile period, plant architecture suited for mechanical harvest, or oil characteristics, including fatty acid composition, phenolic, and volatile compounds to suit new markets. Understanding the molecular basis of these characteristics and improving the efficiency of such breeding programmes require the development of genomic information and tools. However, despite its economic relevance, genomic information on olive or closely related species is still scarce. We have applied Sanger and 454 pyrosequencing technologies to generate close to 2 million reads from 12 cDNA libraries obtained from the Picual, Arbequina, and L…
Extraction of Airways from CT (EXACT'09)
2012
Contains fulltext : 107854.pdf (Publisher’s version ) (Open Access) This paper describes a framework for establishing a reference airway tree segmentation, which was used to quantitatively evaluate fifteen different airway tree extraction algorithms in a standardized manner. Because of the sheer difficulty involved in manually constructing a complete reference standard from scratch, we propose to construct the reference using results from all algorithms that are to be evaluated. We start by subdividing each segmented airway tree into its individual branch segments. Each branch segment is then visually scored by trained observers to determine whether or not it is a correctly segmented part o…
Half a century of Anales de Pediatría. Evolution of its main bibliometric indicators in the Web of Science and Scopus international databases
2019
Purpose: To analyze the coverage and main bibliometric indicators of Anales de Pediatría in Scopus and Science Citation Index Expanded of the Web of Science (SCIE) databases. Material and method: The evolution of the journal production was identified according to the document types, collaboration indexes between authors and institutions, and citations, and impact indicators (number of citations, impact factor, 5-years impact factor and without self-citations, Scimago Journal Rank, quartile, h-index and most cited works). Results: A total of 10,128 papers were included in Scopus (a mean of around 225 per year) and 1861 in SCIE (a mean of around 207 per year). The index of collaboration was 4…
Current bioinformatics tools in genomic biomedical research (Review).
2006
On the advent of a completely assembled human genome, modern biology and molecular medicine stepped into an era of increasingly rich sequence database information and high-throughput genomic analysis. However, as sequence entries in the major genomic databases currently rise exponentially, the gap between available, deposited sequence data and analysis by means of conventional molecular biology is rapidly widening, making new approaches of high-throughput genomic analysis necessary. At present, the only effective way to keep abreast of the dramatic increase in sequence and related information is to apply biocomputational approaches. Thus, over recent years, the field of bioinformatics has r…
Healthcare trajectory mining by combining multidimensional component and itemsets
2012
Sequential pattern mining is aimed at extracting correlations among temporal data. Many different methods were proposed to either enumerate sequences of set valued data (i.e., itemsets) or sequences containing multidimensional items. However, in real-world scenarios, data sequences are described as events of both multidimensional items and set valued information. These rich heterogeneous descriptions cannot be exploited by traditional approaches. For example, in healthcare domain, hospitalizations are defined as sequences of multi-dimensional attributes (e.g. Hospital or Diagnosis) associated with two sets, set of medical procedures (e.g. $ \lbrace $ Radiography, Appendectomy $\rbrace$) and…
Nonlinear pseudo-bosons
2011
In a series of recent papers the author has introduced the notion of (regular) pseudo-bosons showing, in particular, that two number-like operators, whose spectra are ${\Bbb N}_0:={\Bbb N}\cup\{0\}$, can be naturally introduced. Here we extend this construction to operators with rather more general spectra. Of course, this generalization can be applied to many more physical systems. We discuss several examples of our framework.
GPCALMA: A Grid-based tool for mammographic screening
2005
The next generation of High Energy Physics (HEP) experiments requires a GRID approach to a distributed computing system and the associated data management: the key concept is the Virtual Organisation (VO), a group of distributed users with a common goal and the will to share their resources. A similar approach is being applied to a group of Hospitals which joined the GPCALMA project (Grid Platform for Computer Assisted Library for MAmmography), which will allow common screening programs for early diagnosis of breast and, in the future, lung cancer. HEP techniques come into play in writing the application code, which makes use of neural networks for the image analysis and proved to be useful…
Five key attributes can increase marine protected areas performance for small-scale fisheries management
2016
AbstractMarine protected areas (MPAs) have largely proven to be effective tools for conserving marine ecosystem, while socio-economic benefits generated by MPAs to fisheries are still under debate. Many MPAs embed a no-take zone, aiming to preserve natural populations and ecosystems, within a buffer zone where potentially sustainable activities are allowed. Small-scale fisheries (SSF) within buffer zones can be highly beneficial by promoting local socio-economies. However, guidelines to successfully manage SSFs within MPAs, ensuring both conservation and fisheries goals, and reaching a win-win scenario, are largely unavailable. From the peer-reviewed literature, grey-literature and intervie…
A Data Association Algorithm for People Re-Identification in Photo Sequences
2010
In this paper, a new system is presented to support the user in the face annotation task. Every time a photo sequence becomes available, the system analyses it to detect and cluster faces in set corresponding to the same person. We propose to model the problem of people re-identification in photos as a data association problem. In this way, the system takes advantage from the assumption that each person can appear at most once in each photo. We propose a fully automated method for grouping facial images, the method does not require any initialization neither a priori knowledge of the number of persons that are in the photo sequence. We compare the results obtained with our method and with s…