6533b86efe1ef96bd12cc973

RESEARCH PRODUCT

Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?

Flavia PinzariCarmelo DazziGiuseppe Lo PapaLoredana CanforaAnna BenedettiGiovanni BacciGiovanni Bacci

subject

SalinitySoil salinitylcsh:MedicineSoil ScienceBiologyMicrobiologyEcosystemsMicrobial EcologyCoastal EcosystemsBacteria; Phylogeny; RNA Ribosomal 16S; Salinity; Salts; Soil MicrobiologyRNA Ribosomal 16SBacteria Community ecology Community structure DNA sequence analysis Soil Salinity Sequence databasesSoil ecologylcsh:ScienceMolecular BiologyPhylogenySoil MicrobiologyMultidisciplinaryCommunityBacteriaEcologyEcologylcsh:REcology and Environmental SciencesCommunity structureSoil chemistryBiology and Life SciencesBiodiversitySoil EcologySalinitySettore AGR/14 - PedologiaSoil horizonlcsh:QSpatial variabilitySaltsCoastal EcologyResearch Article

description

In this study, the evaluation of soil characteristics was coupled with a pyrosequencing analysis of the V2-V3 16S rRNA gene region in order to investigate the bacterial community structure and diversity in the A horizon of a natural saline soil located in Sicily (Italy). The main aim of the research was to assess the organisation and diversity of microbial taxa using a spatial scale that revealed physical and chemical heterogeneity of the habitat under investigation. The results provided information on the type of distribution of different bacterial groups as a function of spatial gradients of soil salinity and pH. The analysis of bacterial 16S rRNA showed differences in bacterial composition and diversity due to a variable salt concentration in the soil. The bacterial community showed a statistically significant spatial variability. Some bacterial phyla appeared spread in the whole area, whatever the salinity gradient. It emerged therefore that a patchy saline soil can not contain just a single microbial community selected to withstand extreme osmotic phenomena, but many communities that can be variously correlated to one or more environmental parameters. Sequences have been deposited to the SRA database and can be accessed on ID Project PRJNA241061.

10.1371/journal.pone.0106662http://www.plosone.org/article/info:doi/10.1371/journal.pone.0106662