Search results for "Dice"

showing 10 items of 909 documents

Transcriptome analysis of the Populus trichocarpa–Rhizophagus irregularis Mycorrhizal Symbiosis: Regulation of Plant and Fungal Transportomes under N…

2017

Nutrient transfer is a key feature of the arbuscular mycorrhizal (AM) symbiosis. Valuable mineral nutrients are transferred from the AM fungus to the plant, increasing its fitness and productivity, and, in exchange, the AM fungus receives carbohydrates as an energy source from the plant. Here, we analyzed the transcriptome of the Populus trichocarpa-Rhizophagus irregularis symbiosis using RNA-sequencing of non-mycorrhizal or mycorrhizal fine roots, with a focus on the effect of nitrogen (N) starvation. In R. irregularis, we identified 1,015 differentially expressed genes, whereby N starvation led to a general induction of gene expression. Genes of the functional classes of cell growth, memb…

0106 biological sciences0301 basic medicineRhizophagus irregularisMICROBE INTERACTIONSPhysiologyarbuscule[SDV]Life Sciences [q-bio]racine finePlant Science01 natural sciencesnitrogenTranscriptomeGene Expression Regulation PlantMycorrhizaeLOTUS-JAPONICUSGLOMUS-INTRARADICESPlant ProteinsGENE-EXPRESSION2. Zero hungerazotePHOSPHATE TRANSPORTERAMMONIUM TRANSPORTERSorgan transplantationGeneral Medicinefood shortageMedicago truncatulaArbuscular mycorrhizasymbiose mycorhiziennePopulusfamineEnergy sourceARBUSCULAR MYCORRHIZABiologySULFUR STARVATION03 medical and health sciencesPHOSPHORUS ACQUISITIONSymbiosistransport de nutrimentsBotanySymbiosisGene Expression Profilingblack cottonwoodCell Biologybiology.organism_classificationMEDICAGO-TRUNCATULATransplantationpopulus trichocarpa030104 developmental biologyMembrane biogenesis010606 plant biology & botanytransplantation
researchProduct

Protein hydrolysates and mo-biofortification interactively modulate plant performance and quality of ‘canasta’ lettuce grown in a protected environme…

2021

Since the use of protein hydrolysates (PHs) enhances overall plant performance and quality of vegetables, they might be considered as a toll to face a number of concerns essentially associated to the growing request of premium quality foodstuff realized in agreement with eco-friendly agriculture practices. Molybdenum (Mo) is considered a fundamental trace element for human body. Thus, its shortage determines several disorders mainly related to neurological lesion and esophageal cancer. Biofortification of fruiting and leafy vegetables is a promising tool to prevent Mo deficiency in the human diet. The current study was carried out to assess the interactive effect of plant-derived PHs and Mo…

0106 biological sciences<i>Lactuca sativa</i> L.Biofortificationchemistry.chemical_elementPlant-derived PHsSettore AGR/04 - Orticoltura E Floricolturanitrogen indicesnutritional traitsNitrogen indice01 natural scienceschemistry.chemical_compoundNutritional traitSoluble solidsLactuca sativa LFood scienceProtein hydrolysatesCarotenoidchemistry.chemical_classificationSMolybdenum-enrichmentplant-based biostimulantsAgriculture04 agricultural and veterinary sciencesAscorbic acidNitrogenFunctional qualityPlant-based biostimulantchemistryChlorophyll040103 agronomy & agriculture0401 agriculture forestry and fisheriesLactuca sativa L.Leafy vegetablesAgronomy and Crop ScienceBiofortification010606 plant biology & botany
researchProduct

Surgical implantation of electronic tags does not induce medium-term effect: insights from growth and stress physiological profile in two marine fish…

2020

Abstract Background Telemetry applied to aquatic organisms has recently developed greatly. Physiological sensors have been increasingly used as tools for fish welfare monitoring. However, for the technology to be used as a reliable welfare indicator, it is important that the tagging procedure does not disrupt fish physiology, behaviour and performance. In this communication, we share our medium-term data on stress physiological profile and growth performance after surgical tag implantation in two important marine fish species for European aquaculture, the sea bream (Sparus aurata) and the European sea bass (Dicentrarchus labrax). Results Blood samples after surgical tag implantation (46 day…

0106 biological sciencesComputer Networks and CommunicationsPopulationlcsh:Animal biochemistryZoologyWelfareBiologyStress01 natural sciencesMedium termAccelerometer tags Aquaculture Dicentrarchus labrax Sparus aurata Stress Telemetry WelfareFish physiologyAquacultureSparus auratalcsh:QH540-549.5TelemetryDicentrarchus labraxSea basseducationInstrumentationlcsh:QP501-801Electronic tagseducation.field_of_studybusiness.industry010604 marine biology & hydrobiologyMarine fishAccelerometer tags04 agricultural and veterinary sciencesbiology.organism_classificationSignal Processing040102 fisheries0401 agriculture forestry and fisheriesAnimal Science and ZoologyDicentrarchuslcsh:EcologybusinessAnimal Biotelemetry
researchProduct

Combination of Freezing, Low Sodium Brine and Cold Smoking on the Quality and Shelf-Life of Sea Bass (Dicentrarchus labrax L.) Fillets as a Strategy …

2021

Aquaculture is playing a leading role in both meeting the growing demand for seafood and increasing the sustainability of the fish production sector. Thus, innovative technologies that improve its sustainability, competitiveness, and safety are necessary for growth in the sector. This study aimed to develop cold smoked sea bass fillets from aquaculture. The aptitude of frozen and fresh fillets for cold smoking was investigated by processing both fresh and thawed fillets kept previously at &minus

0106 biological sciencesFish farmingFood spoilagefilletsShelf life01 natural scienceslow-salt productArticle0404 agricultural biotechnologyBriningAquacultureSettore AGR/20 - Zoocolture010608 biotechnologylcsh:ZoologyFood sciencesodium replacementlcsh:QL1-991Sea bassSettore BIO/06 - Anatomia Comparata E Citologialcsh:Veterinary medicineGeneral Veterinarybiology<i>Dicentrachus labrax</i>business.industryDicentrachus labraxfish quality04 agricultural and veterinary sciencesbiology.organism_classification040401 food scienceshelf-lifeaquacultureEnvironmental sciencelcsh:SF600-1100Animal Science and ZoologyDicentrarchusbusinessLow sodiumcold smokingAnimals
researchProduct

Inconsistent relationships among protection, benthic assemblage, habitat complexity and fish biomass in Mediterranean temperate rocky reefs

2021

International audience; Marine Protected Areas (MPAs) have been proved to effectively protect and restore fish assemblages. There is mixed evidence regarding the effects of MPAs on benthic assemblages, habitat complexity, and how protection might mediate the effects of habitat features (including biotic and abiotic components) on fish assemblages, with very little information concerning temperate areas. Here, our aim is to assess how protection 1) influences benthic assemblages and habitat complexity, and 2) mediates the effects of habitat complexity on fishes.Using non-destructive methods (photosampling for shallow rocky benthic assemblages, and underwater visual census using strip transec…

0106 biological sciencesGeneral Decision Sciences010501 environmental sciencesBiologyCystoseiraFish assemblages010603 evolutionary biology01 natural sciencesMediterranean Sea14. Life underwaterTransectReefQH540-549.5Ecology Evolution Behavior and Systematics0105 earth and related environmental sciencesAbiotic componentgeographyBiomass (ecology)geography.geographical_feature_categoryEcological indicesEcologyEcologyfungi15. Life on landbiology.organism_classificationHabitat complexityMPAHabitatBenthic zone[SDE]Environmental SciencesMarine protected areaBenthic coverEcological Indicators
researchProduct

Protein actors sustaining arbuscular mycorrhizal symbiosis: underground artists break the silence

2013

'Summary' 26 I. 'Casting for a scenario' 26 II. 'Nominees for a preliminary role' 27 III. 'Nominees for a leading role' 32 IV. 'Future artists' 37   'Acknowledgements' 38   References 38 Summary The roots of most land plants can enter a relationship with soil-borne fungi belonging to the phylum Glomeromycota. This symbiosis with arbuscular mycorrhizal (AM) fungi belongs to the so-called biotrophic interactions, involving the intracellular accommodation of a microorganism by a living plant cell without causing the death of the host. Although profiling technologies have generated an increasing depository of plant and fungal proteins eligible for sustaining AM accommodation and functioning, a …

0106 biological sciencesLASER MICRODISSECTIONPhysiologycarbon (C)phosphorus (P)[SDV]Life Sciences [q-bio]Plant Science01 natural sciencesPlant RootsGlomeromycotaMEDICAGO-TRUNCATULA ROOTSRNA interferenceMycorrhizaeLOTUS-JAPONICUSPlastidsMycorrhizaFUNGUS GLOMUS-INTRARADICESPlant ProteinsGENE-EXPRESSIONGenetics0303 health sciencesGene knockdownFungal proteinPHOSPHATE TRANSPORTERarbuscular mycorrhizaCADMIUM STRESS ALLEVIATIONfood and beveragesSTRIGOLACTONE BIOSYNTHESISArbuscular mycorrhizaEPIDERMAL-CELLSProtein Transportmembranes[SDE]Environmental SciencesSignal TransductionINTRACELLULAR ACCOMMODATIONHyphaeBiologybiotrophyPhosphatesFungal Proteins03 medical and health sciencesSymbiosisBotanyGene silencing[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyGlomeromycotaSymbiosis030304 developmental biologyfungi15. Life on landbiology.organism_classificationCarbonsilencing010606 plant biology & botany
researchProduct

Spatial monitoring of gene activity in extraradical and intraradical developmental stages of arbuscular mycorrhizal fungi by direct fluorescent in si…

2008

International audience; Gene expression profiling based on tissue extracts gives only limited information about genes associated with complex developmental processes such as those implicated in fungal interactions with plant roots during arbuscular mycorrhiza development and function. To overcome this drawback, a direct fluorescent in situ RT-PCR methodology was developed for spatial mapping of gene expression in different presymbiotic and symbiotic structures of an arbuscular mycorrhizal fungus. Transcript detection was optimized by targeting the LSU rRNA gene of Glomus intraradices and monitoring expression of a stearoyl-CoA-desaturase gene that is consistently expressed at high levels in…

0106 biological sciencesMYCORHIZES A ARBUSCULESGENE EXPRESSIONHyphaGLOMUS INTRARADICESDIRECT FLUORESCENT IN SITU RT-PCR01 natural sciencesMicrobiologyPlant RootsARBUSCULAR MYCORRHIZAL FUNGIFungal ProteinsSUPEROXIDE DISMUTASE03 medical and health sciencesFungal StructuresGene Expression Regulation FungalMycorrhizaeBotanyGene expressionGeneticsMedicagoCONFOCAL MICROSCOPYGene030304 developmental biologyDNA PrimersFluorescent DyesPeptidylprolyl isomerase0303 health sciences[SDV.GEN]Life Sciences [q-bio]/GeneticsMicroscopy ConfocalbiologyPEPTIDYLPROPYL ISOMERASEReverse Transcriptase Polymerase Chain ReactionGene Expression ProfilingfungiSYMBIOSISGene Expression Regulation DevelopmentalPeptidylprolyl Isomerasebiology.organism_classificationMedicago truncatulaCell biologyArbuscular mycorrhizaGene expression profilingSTEAROYL-CoA-DESATURASEXanthenesMEDICAGO TRUNCATULAStearoyl-CoA Desaturase010606 plant biology & botany
researchProduct

Structuring factors of the spatio-temporal variability of macrozoobenthos assemblages in a southern Mediterranean lagoon: How useful for bioindicatio…

2017

International audience; The authors investigated the impact of the extension of the El Kantra Channel on the composition and structure of macrobenthic assemblages in Boughrara Lagoon (Gulf of Gabes, Tunisia along with the use of 4 biotic indices (AMBI, BENTIX, M-AMBI and TUBI). Thirteen stations were sampled seasonally in 2012–2013. Forty-one species were found in 2012–2013 not recorded in 2009–2010, including 20 species of polychaetes belonging to the trophic groups of deposit-feeders and carnivores which are expected to increase in areas disturbed by organic pollution. During the survey, we recorded a high fish mortality, essentially caused by the development of harmful algal blooms (HAB)…

0106 biological sciencesMediterranean climateBiotic indicesFood ChainTunisiaBiodiversityBenthic macrofaunaSpatio-temporal variability010501 environmental sciencesAquatic ScienceOceanography01 natural sciencesAlgal bloom[ SDE ] Environmental SciencesMediterranean seaSpatio-Temporal AnalysisMediterranean SeaAnimalsEcosystemSeawater14. Life underwaterEcosystem0105 earth and related environmental sciencesTrophic levelPolychaetebiologyEcology010604 marine biology & hydrobiologyEcological statusFishesBiodiversityEutrophicationbiology.organism_classificationPollutionTrophic structureInvertebrates6. Clean waterOceanography13. Climate action[SDE]Environmental SciencesDinoflagellidaEnvironmental scienceSeasonsBoughrara lagoonEutrophicationEnvironmental MonitoringMarine pollution bulletin
researchProduct

Managing for resilience: an information theory-based approach to assessing ecosystems

2016

Ecosystems are complex and multivariate; hence, methods to assess the dynamics of ecosystems should have the capacity to evaluate multiple indicators simultaneously. Most research on identifying leading indicators of regime shifts has focused on univariate methods and simple models which have limited utility when evaluating real ecosystems, particularly because drivers are often unknown. We discuss some common univariate and multivariate approaches for detecting critical transitions in ecosystems and demonstrate their capabilities via case studies. Synthesis and applications. We illustrate the utility of an information theory-based index for assessing ecosystem dynamics. Trends in this inde…

0106 biological sciencesMultivariate statisticsInformation theoryIndex (economics)Computer scienceInformation theory010603 evolutionary biology01 natural sciencesEcosystemsEconomic indicatorIndicatorsEcosystemResilience (network)Regime shiftsResilienceFisher informationEcologybusiness.industryEnvironmental resource managementUnivariateComputingMilieux_GENERAL010601 ecologyLeadingEcosystem dynamicsbusinessMultivariateIndicesJournal of Applied Ecology
researchProduct

An STE12 gene identified in the mycorrhizal fungus Glomus intraradices restores infectivity of a hemibiotrophic plant pathogen

2009

International audience; * • Mechanisms of root penetration by arbuscular mycorrhizal (AM) fungi are unknown and investigations are hampered by the lack of transformation systems for these unculturable obligate biotrophs. Early steps of host infection by hemibiotrophic fungal phytopathogens, sharing common features with those of AM fungal colonization, depend on the transcription factor STE12. * • Using degenerated primers and rapid amplification of cDNA ends, we isolated the full-length cDNA of an STE12-like gene, GintSTE, from Glomus intraradices and profiled GintSTE expression by real-time and in situ RT-PCR. GintSTE activity and function were investigated by heterologous complementation …

0106 biological sciencesPhysiologyGLOMUS INTRARADICESGenes FungalMolecular Sequence DataMutantGerminationMYCORHIZES ARBUSCULAIRESSaccharomyces cerevisiaePlant SciencePlant Roots01 natural sciencesMicrobiologyFungal ProteinsGlomeromycota03 medical and health sciencesHOST PENETRATIONFungal StructuresGene Expression Regulation FungalMycorrhizaeSequence Homology Nucleic AcidMedicago truncatulaColletotrichumAmino Acid SequenceRNA MessengerTRANSCRIPTION FACTORMycorrhizaSTE12030304 developmental biologyPhaseolus0303 health sciencesFungal proteinbiologyMYCORRHIZAReverse Transcriptase Polymerase Chain ReactionColletotrichum lindemuthianumGene Expression Profilingfungifood and beveragesSpores Fungalbiology.organism_classificationMedicago truncatula[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacyColletotrichumMutationHEMIBIOTROPHIC PATHOGENSequence AlignmentGLOMEROMYCOTA010606 plant biology & botany
researchProduct