Search results for "EOs"
showing 10 items of 2714 documents
Deep learning and process understanding for data-driven Earth system science
2017
Machine learning approaches are increasingly used to extract patterns and insights from the ever-increasing stream of geospatial data, but current approaches may not be optimal when system behaviour is dominated by spatial or temporal context. Here, rather than amending classical machine learning, we argue that these contextual cues should be used as part of deep learning (an approach that is able to extract spatio-temporal features automatically) to gain further process understanding of Earth system science problems, improving the predictive ability of seasonal forecasting and modelling of long-range spatial connections across multiple timescales, for example. The next step will be a hybri…
Mass measurements beyond the major r-process waiting point $^{80}$Zn
2008
High-precision mass measurements on neutron-rich zinc isotopes 71m,72-81Zn have been performed with the Penning trap mass spectrometer ISOLTRAP. For the first time the mass of 81Zn has been experimentally determined. This makes 80Zn the first of the few major waiting points along the path of the astrophysical rapid neutron capture process where neutron separation energy and neutron capture Q-value are determined experimentally. As a consequence, the astrophysical conditions required for this waiting point and its associated abundance signatures to occur in r-process models can now be mapped precisely. The measurements also confirm the robustness of the N = 50 shell closure for Z = 30 farthe…
Bayesian hierarchical models for analysing the spatial distribution of bioclimatic indices
2017
A methodological approach for modelling the spatial distribution of bioclimatic indices is proposed in this paper. The value of the bioclimatic index is modelled with a hierarchical Bayesian model that incorporates both structured and unstructured random effects. Selection of prior distributions is also discussed in order to better incorporate any possible prior knowledge about the parameters that could refer to the particular characteristics of bioclimatic indices. MCMC methods and distributed programming are used to obtain an approximation of the posterior distribution of the parameters and also the posterior predictive distribution of the indices. One main outcome of the proposal is the …
Mapping and determinism of soil microbial community distribution across an agricultural landscape.
2015
Article en open access; International audience; Despite the relevance of landscape, regarding the spatial patterning of microbial communities and the relative influence of environmental parameters versus human activities, few investigations have been conducted at this scale. Here, we used a systematic grid to characterize the distribution of soil microbial communities at 278 sites across a monitored agricultural landscape of 13km(2). Molecular microbial biomass was estimated by soil DNA recovery and bacterial diversity by 16S rRNA gene pyrosequencing. Geostatistics provided the first maps of microbial community at this scale and revealed a heterogeneous but spatially structured distribution…
Impact of hydrologically driven hillslope erosion and landslide occurrence on soil organic carbon dynamics in tropical watersheds
2016
The dynamics of soil organic carbon (SOC) in tropical forests play an important role in the global carbon (C) cycle. Past attempts to quantify the net C exchange with the atmosphere in regional and global budgets do not systematically account for dynamic feedbacks among linked hydrological, geomorphological, and biogeochemical processes, which control the fate of SOC. Here we quantify effects of geomorphic perturbations on SOC oxidation and accumulation in two adjacent wet tropical forest watersheds underlain by contrasting lithology (volcaniclastic rock and quartz diorite) in the Luquillo Critical Zone Observatory. This study uses the spatially-explicit and physically-based model of SOC dy…
PathVisio Analysis: An Application Targeting the miRNA Network Associated with the p53 Signaling Pathway in Osteosarcoma
2021
MicroRNAs (miRNAs) are small single-stranded, non-coding RNA molecules involved in the pathogenesis and progression of cancer, including osteosarcoma. We aimed to clarify the pathways involving miRNAs using new bioinformatics tools. We applied WikiPathways and PathVisio, two open-source platforms, to analyze miRNAs in osteosarcoma using miRTar and ONCO.IO as integration tools. We found 1298 records of osteosarcoma papers associated with the word "miRNA". In osteosarcoma patients with good response to chemotherapy, miR-92a, miR- 99b, miR-193a-5p, and miR-422a expression is increased, while miR-132 is decreased. All identified miRNAs seem to be centered on the TP53 network. This is the first …
Topoisomerase II regulates yeast genes with singular chromatin architectures
2013
Eukaryotic topoisomerase II (topo II) is the essential decatenase of newly replicated chromosomes and the main relaxase of nucleosomal DNA. Apart from these general tasks, topo II participates in more specialized functions. In mammals, topo IIa interacts with specific RNA polymerases and chromatin-remodeling complexes, whereas topo IIb regulates developmental genes in conjunction with chromatin remodeling and heterochromatin transitions. Here we show that in budding yeast, topo II regulates the expression of specific gene subsets. To uncover this, we carried out a genomic transcription run-on shortly after the thermal inactivation of topo II. We identified a modest number of genes not invol…
Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
2020
This article belongs to the Special Issue Autophagy in Cancer.
Variable presence of 5-methylcytosine in commercial RNA and DNA
2015
Nucleoside methylations and other nucleic acid modifications have recently encountered a surge in interest, prompted, among other things, by the detection of methylation and active demethylation of DNA and mRNA by similar mechanisms. In DNA, deoxycytidine methylation by Dnmt enzymes generates 5-methyldeoxycytidine,1 an important epigenetic mark that typically causes inactivation of transcription of the methylated promoter region. Recent exciting developments have shown that these marks are not concrete-cast, but can be actively removed by the oxidative action of TET enzymes,2 which generate, through a series of 2-electron oxidations, first hydroxymethylcytidine (hm5C), then formyldeoxycytid…
Advances in blind source separation for spatial data
2021
Viele Datensaetze bestehen aus multivariaten Messungen, die an verschiedenen geographischen Orten durchgefuehrt wurden. Typischerweise besitzen solche Datensaetze die Eigenschaft, dass Messungen in unmittelbarer Naehe aehnlicher sind als Messungen, die eine hohe Entfernung aufweisen. In der statistischen Analyse solcher raeumlichen Daten sollte diese spezielle Eigenschaft beruecksichtigt werden. In letzter Zeit wurde in der statistischen Literatur die sogenannte Blind Source Separation Methode auf raeumliche Daten erweitert. In diesem Model wird angenommen, dass die Daten aus Linearkombinationen von unbeobachteten Variablen bestehen, und das Ziel ist diese latenten Variablen zu bestimmen. D…