Search results for "Geta"
showing 10 items of 3789 documents
Diversity and complexity of microbial communities from a chlor-alkali tailings dump
2015
Abstract Revegetation of the tailings dumps produced by various industrial activities is necessary to prevent dust storms and erosion and represents a great challenge for ecological restoration. Little is known about the microbial colonisation and community structure of revegetated tailings following site exploitation. Here, we report the sequencing of 16S rRNA and internal transcribed spacer (ITS) fungal RNA gene amplicons from chlor-alkali residue and from an adjacent undisturbed soil to define the composition and assembly of the rhizosphere microbial communities. After quality filtering, a total of 72,373 and 89,929 bacterial sequences and 122,618 and 111,209 fungal sequences remained fo…
High-throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation
2014
Abstract We compared pyrosequencing technology with the PCR-ITS-RFLP analysis of yeast isolates and denaturing gradient gel electrophoresis (DGGE). These methods gave divergent findings for the yeast population. DGGE was unsuitable for the quantification of biodiversity and its use for species detection was limited by the initial abundance of each species. The isolates identified by PCR-ITS-RFLP were not fully representative of the true population. For population dynamics, high-throughput sequencing technology yielded results differing in some respects from those obtained with other approaches. This study demonstrates that 454 pyrosequencing of amplicons is more relevant than other methods …
Protein S-nitrosylation: specificity and identification strategies in plants
2015
SPE Pôle IPM UB; International audience; The role of nitric oxide (NO) as a major regulator of plant physiological functions has become increasingly evident. To further improve our understanding of its role, within the last few years plant biologists have begun to embrace the exciting opportunity of investigating protein S-nitrosylation, a major reversible NO-dependent post-translational modification (PTM) targeting specific Cys residues and widely studied in animals. Thanks to the development of dedicated proteomic approaches, in particular the use of the biotin switch technique (BST) combined with mass spectrometry, hundreds of plant protein candidates for S-nitrosylation have been identi…
Dual mode of action of grape cane extracts against Botrytis cinerea
2019
International audience; Crude extracts of Vitis vinifera canes represent a natural source of stilbene compounds with well characterized antifungals properties. In our trials, exogenous application of a stilbene extract (SE) obtained from grape canes on grapevine leaves reduces the necrotic lesions caused by Botrytis cinerea. The SE showed to possess a direct antifungal activity by inhibiting the mycelium growth. The activation of some grapevine defense mechanism was also investigated. H2O2 production and activation of mitogen-activated protein kinase (MAPK) phosphorylation cascades as well as accumulation of stilbenoid phytoalexins were explored on grapevine cell suspension. Moreover, the t…
Post-translational Modifications in Plant Nuclear Signaling: Novel Insights Into Responses to Environmental Changes
2019
Just imagine a Plant Science professor in front of a classroom full of interested and attentive students. Imagine what their answers to this intriguing question would be: “What are, according to you, the functions ensured by the plant cell nucleus?” It would be very surprising if some of them would answer cell signaling in response to biotic and abiotic stresses or developmental processes. Most of them would probably answer according to a classical point of view: DNA replication or gene expression. Hence it is still admitted in recent publications (see for instance Fedorenko et al., 2010) that molecules smaller than 40 kDa can diffuse freely across the nuclear envelope pores. However, Pauly…
Tracking Ideal Varieties and Cropping Techniques for Agroecological Weed Management: A Simulation-Based Study on Pea.
2022
Book of abstract p.110-111; International audience; Pea (Pisum sativum L.) is a key diversification crop but current varieties are not verycompetitive against weeds. The objective of this study was to identify, depending on the typeof cropping system and weed flora, (1) the key pea parameters that drive crop production,weed control and weed contribution to biodiversity, (2) optimal combinations of peaparameter values and crop-management techniques to maximise these goals. For this, virtualexperiments were run, using FLORSYS, a mechanistic simulation model (Colbach et al., 2021,Field Crops Res 261:108006). This individual-based 3D model simulates daily crop-weed seedand plant dynamics over t…
The Largest Subunit of RNA Polymerase II as a New Marker Gene to Study Assemblages of Arbuscular Mycorrhizal Fungi in the Field
2014
Due to the potential of arbuscular mycorrhizal fungi (AMF, Glomeromycota) to improve plant growth and soil quality, the influence of agricultural practice on their diversity continues to be an important research question. Up to now studies of community diversity in AMF have exclusively been based on nuclear ribosomal gene regions, which in AMF show high intra-organism polymorphism, seriously complicating interpretation of these data. We designed specific PCR primers for 454 sequencing of a region of the largest subunit of RNA polymerase II gene, and established a new reference dataset comprising all major AMF lineages. This gene is known to be monomorphic within fungal isolates but shows an…
Candida albicans-epithelial interactions: dissecting the roles of active penetration, induced endocytosis and host factors on the infection process
2012
International audience; Candida albicans frequently causes superficial infections by invading and damaging epithelial cells, but may also cause systemic infections by penetrating through epithelial barriers. C. albicans is a remarkable pathogen because it can invade epithelial cells via two distinct mechanisms: induced endocytosis, analogous to facultative intracellular enteropathogenic bacteria, and active penetration, similar to plant pathogenic fungi. Here we investigated the contributions of the two invasion routes of C. albicans to epithelial invasion. Using selective cellular inhibition approaches and differential fluorescence microscopy, we demonstrate that induced endocytosis contri…
Performances of neural networks for deriving LAI estimates from existing CYCLOPES and MODIS products
2008
International audience; This paper evaluates the performances of a neural network approach to estimate LAI from CYCLOPES and MODIS nadir normalized reflectance and LAI products. A data base was generated from these products over the BELMANIP sites during the 2001-2003 period. Data were aggregated at 3 km x 3 km, resampled at 1/16 days temporal frequency and filtered to reject outliers. VEGETATION and MODIS reflectances show very consistent values in the red, near infrared and short wave infrared bands. Neural networks were trained over part of this data base for each of the 6 MODIS biome classes to retrieve both MODIS and CYCLOPES LAI products. Results show very good performances of neural …
Quantification of land-atmosphere exchanges of water, energy and carbon dioxide in space and time over the heterogeneous Barrax site
2008
International audience; To advance our understanding of land-atmosphere exchanges of water, energy and carbon dioxide (CO2) in space and time over heterogeneous land surfaces, two intensive field campaigns were carried out at the Barrax agricultural test site in Spain during 12-21 July 2004 (SPARC 2004) and 8-14 July 2005 (SEN2FLEX 2005) involving multiple field, satellite and airborne instruments for characterizing the state of the atmosphere, the vegetation and the soil from the visible to the microwave range of the spectrum. Part of the experimental area is a core site of area 25 km2, within which numerous crops are grown, on both irrigated and dry land, alongside fields of bare soil. Th…