Search results for "GiST"

showing 10 items of 3463 documents

Insights fromsodium into the impacts of elevated pCO2 and temperature on bivalve shell formation

2017

Ocean acidification and warming are predicted to affect the ability of marine bivalves to build their shells, but little is known about the underlying mechanisms. Shell formation is an extremely complex process requiring a detailed understanding of biomineralization processes. Sodium incorporation into the shells would increase if bivalves rely on the exchange of Na+/H+ to maintain homeostasis for shell formation, thereby shedding new light on the acid-base and ionic regulation at the calcifying front. Here, we investigated the combined effects of seawater pH (8.1, 7.7 and 7.4) and temperature (16 and 22 °C) on the growth and sodium composition of the shells of the blue mussel, Mytilus edul…

Ocean Acidification International Coordination Centre (OA-ICC)Registration number of speciesSalinityTemperateMytilus edulisinorganicAlkalinityGrowth rate standard deviationSodium/Calcium ratioExperimentPatinopecten yessoensisTemperature waterCarbon inorganic dissolvedCalculated using seacarb after Nisumaa et al 2010Aragonite saturation stateNorth PacificAlkalinity totalSalinity standard errortotalSodium Calcium ratiopHTemperaturePartial pressure of carbon dioxide (water) at sea surface temperature (wet air) standard errordissolvedCarbonate ionLaboratory experimentPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)standard errorContainers and aquaria 20 1000 L or 1 m 2Earth System ResearchContainers and aquaria (20-1000 L or &lt; 1 m**2)standard deviationUniform resource locator link to referenceCalcification/DissolutionPotentiometric titrationCalcite saturation statewaterGrowth MorphologyContainers and aquaria (20-1000 L or < 1 m**2)Alkalinity total standard errorBenthosUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCAnimaliaBicarbonate ionTypeTemperature water standard errorCalculated using seacarb after Nisumaa et al. (2010)SpeciespH standard errorGrowth rateCalculated using CO2SYSEvent labelCarbonate system computation flagFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonTreatmentPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideMolluscaGrowth/MorphologySingle speciesCalcification DissolutionBenthic animalsFugacity of carbon dioxide water at sea surface temperature wet airCoast and continental shelf
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Sodium provides unique insights into transgenerational effects of ocean acidification on bivalve shell formation

2016

Ocean acidification is likely to have profound impacts on marine bivalves, especially on their early life stages. Therefore, it is imperative to know whether and to what extent bivalves will be able to acclimate or adapt to an acidifying ocean over multiple generations. Here, we show that reduced seawater pH projected for the end of this century (i.e., pH 7.7) led to a significant decrease of shell production of newly settled juvenile Manila clams, Ruditapes philippinarum. However, juveniles from parents exposed to low pH grew significantly faster than those from parents grown at ambient pH, exhibiting a rapid transgenerational acclimation to an acidic environment. The sodium composition of…

Ocean Acidification International Coordination Centre (OA-ICC)Registration number of speciesSalinityTemperateinorganicAlkalinitySodium/Calcium ratioExperimentTemperature waterCarbon inorganic dissolvedRuditapes philippinarumCalculated using seacarb after Nisumaa et al 2010Aragonite saturation stateNorth PacificAlkalinity totalSalinity standard errortotalSodium Calcium ratiopHTemperaturePartial pressure of carbon dioxide (water) at sea surface temperature (wet air) standard errordissolvedAcid base regulationCarbonate ionLaboratory experimentPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)standard errorContainers and aquaria 20 1000 L or 1 m 2Earth System ResearchContainers and aquaria (20-1000 L or &lt; 1 m**2)Uniform resource locator link to referenceCalcite saturation statewaterGrowth MorphologyContainers and aquaria (20-1000 L or < 1 m**2)Alkalinity total standard errorBenthosUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCAnimaliaBicarbonate ionTypeTemperature water standard errorCalculated using seacarb after Nisumaa et al. (2010)SpeciespH standard errorGrowth rateCarbonate system computation flagAcid-base regulationFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonTreatmentAragonite saturation state standard errorPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideSample IDMolluscaGrowth/MorphologySingle speciesBenthic animalsFugacity of carbon dioxide water at sea surface temperature wet airCoast and continental shelf
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Seawater carbonate chemistry and growth, physiological performance of the Manila clam Ruditapes philippinarum

2018

Ocean acidification may interfere with the calcifying physiology of marine bivalves. Therefore, understanding their capacity for acclimation and adaption to low pH over multiple generations is crucial to make predictions about the fate of this economically and ecologically important fauna in an acidifying ocean. Transgenerational exposure to an acidification scenario projected by the end of the century (i.e., pH 7.7) has been shown to confer resilience to juvenile offspring of the Manila clam, Ruditapes philippinarum. However, whether, and to what extent, this resilience can persist into adulthood are unknown and the mechanisms driving transgenerational acclimation remain poorly understood.…

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesCondition indexSalinityBicarbonate ion standard deviationinorganicAlkalinity total standard deviationAlkalinityCalculated using seacarb after Orr et al. (2018)Growth rate standard deviationFugacity of carbon dioxide in seawater standard deviationExperimentTemperature waterCarbon inorganic dissolvedRuditapes philippinarumCalculated using seacarb after Nisumaa et al 2010PercentageAragonite saturation stateNorth PacificAlkalinity totalδ13C dissolved inorganic carbon standard deviationtotalpHRespirationTemperaturedissolvedLaboratory experimentCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Carbon dioxide standard deviationTemperature water standard deviationContainers and aquaria 20 1000 L or 1 m 2δ13C dissolved inorganic carbonEarth System Researchδ13CContainers and aquaria (20-1000 L or &lt; 1 m**2)Metabolic rate of oxygen standard deviationstandard deviationUniform resource locator link to referenceCalcite saturation stateFugacity of carbon dioxide in seawaterwaterPartial pressure of carbon dioxideGrowth MorphologyContainers and aquaria (20-1000 L or < 1 m**2)Aragonite saturation state standard deviationBenthosUniform resource locator/link to referenceOther studied parameter or processSalinity standard deviationOcean Acidification International Coordination Centre OA ICCAnimaliaCarbon inorganic dissolved standard deviationCalcite saturation state standard deviationTypeBicarbonate ionCalculated using seacarb after Nisumaa et al. (2010)SpeciesGrowth rateCondition index standard deviationPartial pressure of carbon dioxide standard deviationMetabolic rate of oxygenCarbonate system computation flagpH standard deviationCarbonate ion standard deviationdissolved inorganic carbonCalculated using seacarb after Orr et al 2018Fugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonTreatmentPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideMolluscaGrowth/MorphologySingle speciesFugacity of carbon dioxide water at sea surface temperature wet airBenthic animalsδ13C standard deviationCoast and continental shelf
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Seawater carbonate chemistry and somatic and otolith growth relationship of Symphodus ocellatus

2019

Ocean acidification (OA) may have varied effects on fish eco-physiological responses. Most OA studies have been carried out in laboratory conditions without considering the in situ pCO2/pH variability documented for many marine coastal ecosystems. Using a standard otolith ageing technique, we assessed how in situ ocean acidification (ambient, versus end-of-century CO2 levels) can affect somatic and otolith growth, and their relationship in a coastal fish. Somatic and otolith growth rates of juveniles of the ocellated wrasse Symphodus ocellatus living off a Mediterranean CO2 seep increased at the high-pCO2 site. Also, we detected that slower-growing individuals living at ambient pCO2 levels …

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesIdentificationSalinityinorganicAlkalinityExperimentTemperature waterCarbon inorganic dissolvedCalculated using seacarb after Nisumaa et al 2010Aragonite saturation stateChordataAlkalinity totaltotalCO2 ventTime in dayspHPelagosSymphodus ocellatusTemperaturedissolvedLength totalCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Temperature water standard deviationEarth System Researchstandard deviationField observationUniform resource locator link to referencePotentiometric titrationCalcite saturation stateLengthPotentiometricwaterPartial pressure of carbon dioxideSiteGrowth MorphologyAgeUniform resource locator/link to referenceSalinity standard deviationOcean Acidification International Coordination Centre OA ICCMediterranean SeaAnimaliaTypeSampling dateBicarbonate ionNektonCalculated using seacarb after Nisumaa et al. (2010)SpeciesCalculated using CO2SYSPartial pressure of carbon dioxide standard deviationCarbonate system computation flagpH standard deviationFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideGrowth/MorphologySingle speciesFugacity of carbon dioxide water at sea surface temperature wet airsense organs
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Seawater carbonate chemistry and percentage cover of macroalgal species at three locations at Vulcano, Italy

2017

Beneficial effects of CO2 on photosynthetic organisms will be a key driver of ecosystem change under ocean acidification. Predicting the responses of macroalgal species to ocean acidification is complex, but we demonstrate that the response of assemblages to elevated CO2 are correlated with inorganic carbon physiology. We assessed abundance patterns and a proxy for CO2:HCO3- use (delta 13C values) of macroalgae along a gradient of CO2 at a volcanic seep, and examined how shifts in species abundance at other Mediterranean seeps are related to macroalgal inorganic carbon physiology. Five macroalgal species capable of using both HCO3- and CO2 had greater CO2 use as concentrations increased. Th…

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesSalinityCaulerpa proliferaCommunity composition and diversityBicarbonate ion standard deviationUdotea petiolatainorganicAlkalinity total standard deviationAlkalinitySargassum muticumDictyota dichotomaHalopteris scopariaYearsCystoseira brachycarpaExperimentTemperature waterCarbon inorganic dissolvedCystoseira foeniculaceaCaulerpa racemosaCalculated using seacarb after Nisumaa et al 2010Cystoseira foeniculataAragonite saturation stateAlkalinity totaltotalCO2 ventpHTemperaturedissolvedCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Acetabularia acetabulumJania rubensCarbon dioxide standard deviationEarth System Researchδ13CLipid contentstandard deviationField observationUniform resource locator link to referenceCystoseira crinitaCoverageCalcite saturation stateLocationwaterSiteRocky-shore communityFigureBenthosUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCMediterranean SeaCarbon inorganic dissolved standard deviationTypeBicarbonate ionDictyopteris polypodioidesDilophus fasciolaCalculated using seacarb after Nisumaa et al. (2010)SpeciesCystoseira compressaEvent labelCarbonate system computation flagpH standard deviationCarbonate ion standard deviationMassFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonOxygenPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideRocky shore communityEntire communityFugacity of carbon dioxide water at sea surface temperature wet airPadina pavonicaSeasonδ13C standard deviationCoast and continental shelfCodium bursaTableCystoseira barbarta
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Seawater carbonate chemistry and carbon sources of mussel shell carbonate

2018

Ocean acidification and warming is widely reported to affect the ability of marine bivalves to calcify, but little is known about the underlying mechanisms. In particular, the response of their calcifying fluid carbonate chemistry to changing seawater carbonate chemistry remains poorly understood. The present study deciphers sources of the dissolved inorganic carbon (DIC) in the calcifying fluid of the blue mussel (Mytilus edulis) reared at two pH (8.1 and 7.7) and temperature (16 and 22 °C) levels for five weeks. Stable carbon isotopic ratios of seawater DIC, mussel soft tissues and shells were measured to determine the relative contribution of seawater DIC and metabolically generated carb…

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesSalinityMytilus edulisinorganicAlkalinityExperimentTemperature waterCarbon inorganic dissolvedhemic and lymphatic diseasesCalculated using seacarb after Nisumaa et al 2010PercentageAragonite saturation stateNorth Pacificδ13C dissolved inorganic carbon standard deviationAlkalinity totalSalinity standard errortotalpHTemperaturePartial pressure of carbon dioxide (water) at sea surface temperature (wet air) standard errordissolvedLaboratory experimentCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)standard errorContainers and aquaria 20 1000 L or 1 m 2δ13C dissolved inorganic carbonEarth System Researchδ13CContainers and aquaria (20-1000 L or &lt; 1 m**2)standard deviationUniform resource locator link to referencecirculatory and respiratory physiologyCalcite saturation statewaterContainers and aquaria (20-1000 L or < 1 m**2)BenthosAlkalinity total standard errorUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCAnimaliaTypeBicarbonate ionTemperature water standard errorCalculated using seacarb after Nisumaa et al. (2010)SpeciespH standard errorCalcite saturation state standard errorCarbonate system computation flagdissolved inorganic carbonFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonBiomass/Abundance/Elemental compositionPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideMolluscaSingle speciesFugacity of carbon dioxide water at sea surface temperature wet airBenthic animalsδ13C standard deviationBiomass Abundance Elemental compositionCoast and continental shelf
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Individual and population-level responses to ocean acidification

2016

Ocean acidification is predicted to have detrimental effects on many marine organisms and ecological processes. Despite growing evidence for direct impacts on specific species, few studies have simultaneously considered the effects of ocean acidification on individuals (e.g. consequences for energy budgets and resource partitioning) and population level demographic processes. Here we show that ocean acidification increases energetic demands on gastropods resulting in altered energy allocation, i.e. reduced shell size but increased body mass. When scaled up to the population level, long-term exposure to ocean acidification altered population demography, with evidence of a reduction in the pr…

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesSalinityinorganicBottles or small containers/Aquaria (<20 L)AlkalinityExperimentTemperature waterCarbon inorganic dissolvedCalculated using seacarb after Nisumaa et al 2010Aragonite saturation stateRespiration rate oxygenBottles or small containers Aquaria 20 LAlkalinity totalSalinity standard errortotalCO2 ventpHRespirationTemperaturedissolvedCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Field experimentstandard errorCarbon inorganic dissolved standard errorRespiration rateEarth System ResearchSexUniform resource locator link to referencePotentiometric titrationCalcite saturation stateDry masswaterSiteHexaplex trunculusBenthosAlkalinity total standard errorUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCMediterranean SeaAnimaliaTypeBicarbonate ionTemperature water standard errorCalculated using seacarb after Nisumaa et al. (2010)SpeciesWet massBottles or small containers/Aquaria (&lt;20 L)Calculated using CO2SYSCarbonate system computation flagFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonBiomass/Abundance/Elemental compositionTreatmentPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideMolluscaSingle speciesFugacity of carbon dioxide water at sea surface temperature wet airBenthic animalsBiomass Abundance Elemental compositionCoast and continental shelfoxygen
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A fully automated method for accurate measurement of geometrical distortion in magnetic resonance imaging of a 3D-lattice phantom

2019

Abstract This paper describes an automated method for extracting the apparent positions of fiducial points from 2D or 3D images of a phantom. We consider a 3D-lattice phantom for two main reasons: first, ease of manufacture and isotropy of its structure with respect to coordinate projections; second, a connected structure allowing to uniquely assess the adjacency relationship between fiducial points even if geometric distortions arising from main magnet inhomogeneity and gradient fields non-linearity is severe as observed in open-bore systems. In order to validate our proposed method and compare different choices for the parameters of our phantom (i.e. number and distance between grids and …

Offset (computer science)RegistrationImage qualityComputer scienceBiomedical EngineeringBiophysicsImage enhancement/restoration (noise and artifact reduction)Signal-To-Noise RatioImaging phantomPattern Recognition Automated030218 nuclear medicine & medical imaging03 medical and health sciencesImaging Three-Dimensional0302 clinical medicineSoftwareRobustness (computer science)HumansComputer SimulationRadiology Nuclear Medicine and imagingMagnetic resonance imaging (MRI)Fiducial point localizationElectronic Data ProcessingPhantoms ImagingSettore ING-INF/03 - Telecomunicazionibusiness.industryAirSpherical harmonicsModels TheoreticalMagnetic Resonance ImagingPhantom designPersonal computerAdjacency listbusinessAlgorithmSoftware030217 neurology & neurosurgeryMagnetic Resonance Imaging
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The GiSAS study: Rationale and design of a pragmatic randomized controlled trial on aripiprazole, olanzapine and haloperidol in the long-term treatme…

2011

Given the controversy about the comparative efficacy of first- compared with second-generation antipsychotics in the treatment of schizophrenia, more large-scale evidence is needed to guide clinicians in their prescriptions. Most randomized controlled trials (RCTs) were conducted in centers of excellence on highly selected samples, poorly representative of real-world patients, and often suffered conflicts of interest as they were sponsored by drug companies. The primary aim of the present study is to compare the effectiveness of haloperidol, olanzapine and aripiprazole in a representative sample of schizophrenia patients. The GiSAS trial is an open-label, independent, pragmatic RCT in Itali…

Olanzapinemedicine.medical_specialtyTime Factorsmedicine.medical_treatmentAripiprazoleQuinolonesPragmatic trialPiperazineslaw.inventionAntipsychoticBenzodiazepinesRandomized controlled triallawAntipsychotic; Pragmatic trial; SchizophreniamedicineClinical endpointHumansPharmacology (medical)AntipsychoticPsychiatrySettore MED/25 - PsichiatriaProportional Hazards Modelsbusiness.industryPatient SelectionGeneral MedicineDiscontinuationLogistic ModelsItalyTolerabilityOlanzapineResearch DesignSchizophreniaPhysical therapyHaloperidolObservational studyAripiprazoleantipsychotic schizophrenia metabolic syndromebusinessAntipsychotic Agentsmedicine.drugContemporary Clinical Trials
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Time trends of human papillomavirus types in invasive cervical cancer, from 1940 to 2007.

2013

Contribution over time of human papillomavirus (HPV) types in human cancers has been poorly documented. Such data is fundamental to measure current HPV vaccines impact in the years to come. We estimated the HPV type-specific distribution in a large international series of invasive cervical cancer (ICC) over 70 years prior to vaccination. Paraffin embedded ICC cases diagnosed between 1940 and 2007 were retrieved from eleven countries in Central-South America, Asia and Europe. Included countries reported to have low-medium cervical cancer screening uptake. Information on age at and year of diagnosis was collected from medical records. After histological confirmation, HPV DNA detection was per…

OncologyAdultCancer ResearchInvasive cervical cancermedicine.medical_specialtyAsiavirusesUterine Cervical NeoplasmsHPV vaccinesLogistic regressionInternal medicinemedicineHumansNeoplasm InvasivenessHuman papillomavirusEarly Detection of CancerAgedRetrospective StudiesGynecologyCervical cancerHuman papillomavirus 16Paraffin EmbeddingHuman papillomavirus 18business.industryTime trendsMedical recordvirus diseasesCentral AmericaMiddle Agedmedicine.diseasefemale genital diseases and pregnancy complicationsVaccinationEuropeLogistic ModelsOncologyDNA ViralFemalebusinessInternational journal of cancer
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