Search results for "Hirshfeld"

showing 10 items of 69 documents

Synthesis, Structure and Antimicrobial Activity of New Co(II) Complex with bis-Morpholino/Benzoimidazole-s-Triazine Ligand

2023

A new Co(II) perchlorate complex of the bis-morpholino/benzoimidazole-s-triazine ligand, 4,4′-(6-(1H-benzo[d]imidazol-1-yl)-1,3,5-triazine-2,4-diyl)dimorpholine (BMBIT), was synthesized and characterized. The structure of the new Co(II) complex was approved to be [Co(BMBIT)2(H2O)4](ClO4)2*H2O using single-crystal X-ray diffraction. The Co(II) complex was found crystallized in the monoclinic crystal system and P21/c space group. The unit cell parameters are a = 22.21971(11) Å, b = 8.86743(4) Å, c = 24.38673(12) Å and β = 113.4401(6)°. This heteroleptic complex has distorted octahedral coordination geometry with two monodenatate BMBIT ligand units via the benzoimidazole N-atom and four water …

bis-morpholino/benzoimidazole-s-triazineantimicrobialX-ray structureCo(II)Hirshfeld
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Crystal structure and Hirshfeld surface analysis of (E)-3-(benzylideneamino)-5-phenylthiazolidin-2-iminium bromide

2020

The central thiazolidine ring of the title salt, C16H16N3S+center dot Br-, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N-H center dot center dot center dot Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H center dot center dot center dot H (46.4%), C center dot center dot center dot H/H center dot center dot center dot C (18.6%) and H center dot center dot center dot Br/Br center dot center dot center dot H (17.5%) interactions.

chemistry.chemical_classificationcrystal structureCrystallographyHydrogen bondIminiumSalt (chemistry)General ChemistryCrystal structureCondensed Matter::Mesoscopic Systems and Quantum Hall EffectCondensed Matter PhysicsRing (chemistry)Crystalchemistry.chemical_compoundCrystallographychemistryBromideQD901-999Atomcharge assisted hydrogen bondinghirshfeld surface analysisthiazolidine ringenvelope conformationGeneral Materials ScienceActa Crystallographica Section E: Crystallographic Communications
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Crystal structure, Hirshfeld surface analysis and DFT studies of (E)-1-(4-bromophenyl)-3-(3-fluorophenyl)prop-2-en-1-one

2018

The title halogenated organic chalcone was prepared by a Claisen–Schmidt condensation reaction. A Hirshfeld surface analysis was carried out to reveal the percentage contributions of the inter­molecular inter­actions. A theoretical study was performed using the density functional theory (DFT) at B3LYP with the 6–311 G++(d,p) basis set level to compare with the experimental results of the X-ray analysis and UV–vis absorption analysis in term of the geometrical parameters, HOMO-LUMO energy gap and charge distributions.

crystal structureCrystal structure010402 general chemistry010403 inorganic & nuclear chemistryDFT01 natural sciencesResearch Communicationslcsh:ChemistryCrystalHOMO–LUMOmolecular electrostatic potentialNucleophileGeneral Materials ScienceHOMO/LUMOBasis setmol­ecular electrostatic potentialUV–visHydrogen bondChemistryHirshfeld surfaceGeneral ChemistryCondensed Matter Physics0104 chemical sciencesCrystallographylcsh:QD1-999Electrophilehalogen chalconeDensity functional theoryActa Crystallographica Section E Crystallographic Communications
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Crystal structure, Hirshfeld surface analysis and electrostatic potential study of naturally occurring cassane-type diterpenoid Pulcherrimin C monohy…

2019

Single crystal X-ray diffraction analysis and Hirshfeld surface analysis of the title compound were carried out to analyse qu­anti­tatively the inter­molecular inter­actions involved in the crystal packing. The electrostatic potential surface was generated over the Hirshfeld surface to visualize the potential active sites.

crystal structureCrystal structurecassane-type diterpenoids010402 general chemistry010403 inorganic & nuclear chemistryRing (chemistry)01 natural sciencesResearch Communicationslcsh:ChemistryCrystalchemistry.chemical_compoundFuranHirshfeld surface analysisGeneral Materials SciencebiologyHydrogen bondGeneral ChemistryCondensed Matter PhysicsCaesalpinia pulcherrimabiology.organism_classificationTerpenoid0104 chemical sciencesCaesalpinia pulcherrimapulcherrimin CCrystallographyelectrostatic potentiallcsh:QD1-999chemistryActa Crystallographica Section E Crystallographic Communications
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Crystal structure and Hirshfeld surface analysis of dimethyl (1R*, 3aS*, 3a(1)R*, 6aS*, 9R*, 9aS*)-3a(1),5,6,9a-tetrahydro-1H,4H,9H-1,3a:6a,9-diepoxy…

2019

The title diepoxyphenalene derivative, C17H18O6, comprises a fused cyclic system containing four five-membered rings (two dihydrofuran and two tetrahydrofuran) and one six-membered ring (cyclohexane). The five-membered dihydrofuran and tetrahydrofuran rings adopt envelope conformations, and the six-membered cyclohexane ring adopts a distorted chair conformation. Two methyl carboxylate groups occupy adjacent positions (2- and 3-) on a tetrahydrofuran ring. In the crystal, two pairs of C-H center dot center dot center dot O hydrogen bonds link the molecules to form inversion dimers, enclosing two R-2(2)(6) ring motifs, that stack along the a-axis direction and are arranged in layers parallel …

crystal structureCrystallographyC—H...O hydrogen bondsQD901-999fused hexacyclic systemHirshfeld surface analysisdiepoxyphenalene
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Influences of Chemical Functionalities on Crystal Structures and Electrochemical Properties of Dihydro-benzoxazine Dimer Derivatives

2021

Dihydro-1,3,2H-benzoxazine dimer derivatives or dihydro-benzoxazine dimers are a class of compounds typically prepared by ring-opening reactions between dihydro-benzoxazines and phenols. Dihydro-benzoxazine dimers act as chelating agents for several transition and rare-earth cations. To better understand the chelating properties, it is necessary to examine their structural features and electrochemical characteristics thoroughly. However, the electrochemical properties of dihydro-benzoxazine dimers have not been tremendously examined. Herein, eight derivatives of dihydro-benzoxazine dimers possessing different substituents on the benzene ring and the tertiary-amine nitrogen were synthesized …

crystal structureCrystallographyHydrogen bondGeneral Chemical EngineeringDimerHirshfeld surfaceIntermolecular forceCrystal structureCondensed Matter PhysicsRedoxInorganic ChemistryCrystalelectrochemical propertychemistry.chemical_compoundCrystallographychemistryQD901-999General Materials SciencebenzoxazineCyclic voltammetryMethyleneCrystals
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Crystal structure of (2E)-3-[4-(dimethylamino)phenyl]-1-(thiophen-2-yl)prop-2-en-1-one

2017

In the title chalcone-thio­phene derivative, the dihedral angle between the aromatic and the thio­phene rings is 11.4 (2)°. In the crystal, mol­ecules are linked by C—H⋯O and C—H⋯S weak inter­actions along [100], forming rings of R22(8) graph-set motif, by C—H⋯O weak inter­actions along [010], forming C(6) chains, and by weak H(meth­yl–group)⋯Cg(thio­phene ring) inter­actions into dimers; the crystal packing resembles a herringbone arrangement when viewed along [100]. A mol­ecular docking calculation of the title compound with the neuraminidase enzyme was carried out.

crystal structureCrystallographyin silico evaluationStereochemistryChemistryThio-General ChemistryCrystal structureDihedral angle010402 general chemistry010403 inorganic & nuclear chemistryCondensed Matter Physicschalcone thiophene derivative01 natural sciencesResearch Communications0104 chemical sciencesCrystallographyQD901-999Hirshfeld surface analysisGeneral Materials Sciencechalcone thio­phene derivativeActa Crystallographica Section E Crystallographic Communications
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Crystal structure and Hirshfeld surface analysis of 3-octyl-4-oxo-2,6-bis(3,4,5-trimethoxyphenyl)piperidinium chloride

2018

The title compound was synthesized by a one-pot Mannich condensation reaction. In the crystal, centrosymmetric dimers are linked into layers parallel to (011) by N—H⋯Cl and C—H⋯Cl hydrogen bonds. A Hirshfeld surface analysis indicates that O—H (20.5%) inter­actions make the largest contribution to the crystal packing.

crystal structureCyclohexane conformationCrystal structure010403 inorganic & nuclear chemistryRing (chemistry)01 natural sciencesMedicinal chemistryChlorideResearch CommunicationsCrystalchemistry.chemical_compoundMannich reactionmedicineHirshfeld surface analysisGeneral Materials ScienceBenzeneMannich reactionCrystallography010405 organic chemistryHydrogen bondChemistryGeneral ChemistryCondensed Matter Physics0104 chemical sciencesQD901-999piperidine-4-onemedicine.drugActa Crystallographica Section E Crystallographic Communications
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Crystal structure and Hirshfeld surface analysis of poly[[bis[μ4-N,N′-(1,3,5-oxadiazinane-3,5-diyl)bis(carbamoylmethanoato)]nickel(II)tetrapotassium]…

2021

The complex nickel(II) anion comprises a pseudomacrocyclic hydrazide-based ligand with an L shape. In the crystal, such anions are connected with the potassium cations and the water solvent mol­ecules, forming a three-dimensional polymeric framework, which is stabilized by an extensive system of hydrogen bonds.

crystal structureCyclohexane conformationshape analysischemistry.chemical_elementCrystal structure010402 general chemistryRing (chemistry)01 natural sciencesResearch Communicationspseudomacrocyclic ligandchemistry.chemical_compoundtemplate reactionSHAPE analysisAmidehirshfeld surface analysisHirshfeld surface analysisGeneral Materials ScienceCrystallography010405 organic chemistryHydrogen bondnickel(ii) complexGeneral ChemistryCondensed Matter Physicsnickel(II) complex3. Good health0104 chemical sciencesTemplate reactionNickelCrystallographychemistryQD901-999Hydratehydrazide-based ligand
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Crystal structure, Hirshfeld surface analysis and HOMO–LUMO analysis of (E)-4-bromo-N′-(4-methoxybenzylidene)benzohydrazide

2018

The title Schiff base compound, C15H13BrN2O2, displays an E configuration with respect to the C=N double bond, which forms a dihedral angle of 58.06 (9)° with the benzene ring. In the crystal, the molecules are linked into chains parallel to the b axis by N—H...O and C—H...O hydrogen bonds, giving rise to rings with an R 2 1(6) graph-set motif. The chains are further linked into a three-dimensional network by C—H...π interactions. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from C...H (33.2%), H...H (27.7%), Br...H/H...Br (14.2%) and O...H/H...O (13.6%) interactions. The title compound has also been characterized by frontier molecu…

crystal structureDouble bondCrystal structureDihedral angle010402 general chemistryRing (chemistry)01 natural sciencesCrystalSchiff basechemistry.chemical_compoundHirshfeld surface analysisGeneral Materials ScienceHOMO/LUMOchemistry.chemical_classificationCrystallographySchiff baseintermolecular interactions010405 organic chemistryHydrogen bondGeneral ChemistryCondensed Matter Physics0104 chemical sciencesCrystallographyHOMO–LUMO calculationchemistryQD901-999Acta Crystallographica Section E Crystallographic Communications
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