Search results for "Hop"
showing 10 items of 5189 documents
X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification
2017
X!TandemPipeline is a software designed to perform protein inference and to manage redundancy in the results of phosphosite identification by database search. It provides the minimal list of proteins or phosphosites that are present in a set of samples using grouping algorithms based on the principle of parsimony. Regarding proteins, a two-level classification is performed, where groups gather proteins sharing at least one peptide and subgroups gather proteins that are not distinguishable according to the identified peptides. Regarding phosphosites, an innovative approach based on the concept of phosphoisland is used to gather overlapping phosphopeptides. The graphical interface of X!Tandem…
Widespread plant specialization in the polyphagous planthopper Hyalesthes obsoletus (Cixiidae), a major vector of stolbur phytoplasma: Evidence of cr…
2018
The stolbur phytoplasma vector Hyalesthes obsoletus is generally considered as a polyphagous species associated with numerous wild and cultivated plants. However, recent research in southeastern Europe, the distribution centre of H. obsoletus and the area of most stolbur-inflicted crop diseases, points toward specific host-plant associations of the vector, indicating specific vector-based transmission routes. Here, we study the specificity of populations associated with four host-plants using mitochondrial and nuclear genetic markers, and we evaluate the evolution of host-shifts in H. obsoletus. Host-plant use was confirmed for Convolvulus arvensis, Urtica dioica, Vitex agnus-castus and Cre…
Karyotype variability and inter-population genomic differences in freshwater ostracods (Crustacea) showing geographical parthenogenesis
2018
Transitions from sexual to asexual reproduction are often associated with polyploidy and increased chromosomal plasticity in asexuals. We investigated chromosomes in the freshwater ostracod species Eucypris virens (Jurine, 1820), where sexual, asexual and mixed populations can be found. Our initial karyotyping of multiple populations from Europe and North Africa, both sexual and asexual, revealed a striking variability in chromosome numbers. This would suggest that chromosomal changes are likely to be accelerated in asexuals because the constraints of meiosis are removed. Hence, we employed comparative genomic hybridization (CGH) within and among sexual and asexual populations to get insigh…
Hop stunt viroid: A polyphagous pathogenic RNA that has shed light on viroid–host interactions
2021
[Taxonomy]: Hop stunt viroid (HSVd) is the type species of the genus Hostuviroid (family Pospiviroidae). The other species of this genus is Dahlia latent viroid, which presents an identical central conserved region (CCR) but lacks other structural hallmarks present in Hop stunt viroid. HSVd replication occurs in the nucleus through an asymmetric rolling-circle model as in the other members of the family Pospiviroidae, which also includes the genera Pospiviroid, Cocadviroid, Apscaviroid, and Coleoviroid.
Methanotrophs are core members of the diazotroph community in decaying Norway spruce logs
2018
Dead wood is initially a nitrogen (N) poor substrate, where the N content increases with decay, partly due to biological N2 fixation, but the drivers of the N accumulation are poorly known. We quantified the rate of N2 fixation in decaying Norway spruce logs of different decay stages and studied the potential regulators of the N2-fixation activity. The average rate for acetylene reduction in the decaying wood was 7.5 nmol ethylene g−1d−1, which corresponds to 52.9 μg N kg−1d−1. The number of nifH copies (g−1 dry matter) was higher at the later decay stages, but no correlation between the copy number and the in vitro N2 fixation rate was found. All recovered nifH sequences were assigned to t…
A link between heritable parasite resistance and mate choice in dung beetles
2019
AbstractParasites play a central role in the adaptiveness of sexual reproduction. Sexual selection theory suggests a role for parasite resistance in the context of mate choice, but the evidence is mixed. The parasite-mediated sexual selection (PMSS) hypothesis derives a number of predictions, among which that resistance to parasites is heritable, and that female choice favors parasite resistance genes in males. Here, we tested the PMSS hypothesis using the dung beetle Onthophagus taurus, a species that can be heavily parasitized by Macrocheles merdarius mites, which are known to affect adult survival. We investigated the heritability of resistance to M. merdarius, as well as whether female …
Landscape structure influences browsing on a keystone tree species in conservation areas
2020
Aspen is a keystone species in boreal forests. The future of aspen in many conservation areas is threatened by ungulate browsing. Our aim was to study the effect of browsing on aspen regeneration and population structure in conservation areas in Central Finland, and the effect of surrounding landscape structure on browsing. Aspen density varied greatly among and within conservation areas. In about half of the conservation areas, middle-sized aspens were scarce or missing, which indicates heavy browsing in the recent past. In addition, the number of dead, large aspens in advanced decay stages were rare. Browsing pressure varied greatly among the areas, but on average, a bit more than half of…
Decline in coccolithophore diversity and impact on coccolith morphogenesis along a natural CO2 gradient
2014
A natural pH gradient caused by marine CO2 seeps off Vulcano Island (Italy) was used to assess the effects of ocean acidification on coccolithophores, which are abundant planktonic unicellular calcifiers. Such seeps are used as natural laboratories to study the effects of ocean acidification on marine ecosystems, since they cause long-term changes in seawater carbonate chemistry and pH, exposing the organisms to elevated CO2 concentrations and therefore mimicking future scenarios. Previous work at CO2 seeps has focused exclusively on benthic organisms. Here we show progressive depletion of 27 coccolithophore species, in terms of cell concentrations and diversity, along a calcite saturation …
Rediscovery and identity of Pumilomyia protrahenda De Stefani (Diptera, Cecidomyiidae) in Sicily with redescription and reassessment of its taxonomic…
2016
Abstract A population of the gall midge Pumilomyia protrahenda De Stefani, 1919 causing galls on Artemisia arborescens (Asteraceae) was discovered near Palermo (Sicily) in 2008. This species had not been found since 1918. Detailed study of morphological characters of adults, larvae and pupae revealed that Pumilomyia protrahenda belongs to the genus Rhopalomyia Rübsaamen, 1892, tribe Rhopalomyiini. The monotypic genus Pumilomyia De Stefani, 1919 is therefore synonymized under Rhopalomyia Rübsaamen, 1892. Rhopalomyia protrahenda comb. n. is redescribed, with important morphological characters illustrated. Adults have one-segmented palpi, antennae with 12–13 short flagellomeres and long legs w…
Interspecific variation in the relationship between clutch size, laying date and intensity of urbanization in four species of hole-nesting birds
2016
Marie Vaugoyeau [et al.]