Search results for "INTERACTION"

Effects of temperature and pollination site on pollen performance in Betula pendula Roth – evidence for genotype-environment interactions

2000

We studied whether the differences between genetically different pollen donors (Betula pendula Roth clones) with respect to pollen-tube growth rate were consistent under different thermal conditions during pollen germination in vivo and in vitro. We conducted a single-donor hand-pollination experiment with same pollen donors and recipients in a plastic house seed orchard and at an outdoor clone collection. The prevailing daily mean temperature during pollen germination was 13°C higher in the plastic house than outdoors. The pollen-tube growth rate of each pollen donor was additionally determined in vitro on agar medium at five temperatures (10°, 15°, 22°, 30° and 35°C). A significant intera…

PINCoC: a Co-Clustering based Method to Analyze Protein-Protein Interaction Networks

2007

Anovel technique to search for functionalmodules in a protein-protein interaction network is presented. The network is represented by the adjacency matrix associated with the undirected graph modelling it. The algorithm introduces the concept of quality of a sub-matrix of the adjacency matrix, and applies a greedy search technique for finding local optimal solutions made of dense submatrices containing the maximum number of ones. An initial random solution, constituted by a single protein, is evolved to search for a locally optimal solution by adding/removing connected proteins that best contribute to improve the quality function. Experimental evaluations carried out on Saccaromyces Cerevis…

Lactobacillus acidophilus La5 and Bifidobacterium lactis Bb12 cell surface hydrophobicity and survival of the cells under adverse environmental condi…

2012

Abstract Changes in the cell surface hydrophobicity (CSH) of probiotic bacteria Lactobacillus acidophilus La5 and Bifidobacterium lactis Bb12 and the survival of these cells were examined in response to varied cultivation conditions and adverse environmental conditions. An inverse linear relationship (P < 0.01) was detected between the CSH of intact L. acidophilus La5 and B. lactis Bb12 and survival of cells subjected to subsequent freezing/thawing, long-term storage or exposure to mineral and bile acids. The observed relationships were supported by significant correlations between the CSH and changes in composition of the cell envelopes (proteins, lipids and carbohydrates) of L. aci…

2013

Currently, a growing number of programs become available in statistical software for multiple imputation of missing values. Among others, two algorithms are mainly implemented: Expectation Maximization (EM) and Multiple Imputation by Chained Equations (MICE). They have been shown to work well in large samples or when only small proportions of missing data are to be imputed. However, some researchers have begun to impute large proportions of missing data or to apply the method to small samples. A simulation was performed using MICE on datasets with 50, 100 or 200 cases and four or eleven variables. A varying proportion of data (3% - 63%) was set as missing completely at random and subsequent…

Protein interactions with ordered lipid films: Specific and unspecific binding

1991

Development of controlled release systems of biocides for the conservation of cultural heritage

2017

Abstract The presence of microorganisms is one of the main causes of monument deterioration. Biocides are usually applied after or before restoration in order to prevent or slow down microbial growth. Frequent applications are necessary leading to increased costs and high risks to humans and the environment. The aim of this study is the design of novel controlled release systems comprising a biocide loaded into a mesoporous silica. Pristine MCM41 as well as MCM41 functionalised with carboxy- (MCM41-COOH) and amino-groups (MCM41-NH2) were used. Biotin T and New Des 50, two commercial formulations, were chosen as biocides. The biocide encapsulation was performed adding the mesoporous silica t…

Molecular Dynamics Simulations of the Initial Adsorption Stages of Fibrinogen on Mica and Graphite Surfaces.

2015

Fibrinogen, a blood glycoprotein of vertebrates, plays an essential role in blood clotting by polymerizing into fibrin when activated. Upon adsorption on material surfaces, it also contributes to determine their biocompatibility and has been implicated in the onset of thrombosis and inflammation at medical implants. Here we present the first fully atomistic simulations of the initial stages of the adsorption process of fibrinogen on mica and graphite surfaces. The simulations reveal a weak adsorption on mica that allows frequent desorption and reorientation events. This adsorption is driven by electrostatic interactions between the protein and the silicate surface as well as the counterion …

Insects and fungi: ecological interactions and functional biodiversity

Integrity of predator assemblages controls the abundanceof the alien crab Percnon gibbesi

2016

Ecosystem resistance to species invasion is considered to be related to the abundance and diversity of native species (i.e. diversity-resistance hypothesis). In particular, the integrity of predator assemblages may enhance the control of prey populations through direct and indirect interactions (e.g.: different predation strategies by different predators, facilitative interactions among predators). Depletion of predators due to overfishing is therefore expected to enhance the abundance and ultimately the spread of alien prey species. Manipulative field experiments were performed to evaluate the effects of different abundance and diversity of predator assemblages on the invasion success of t…

Data Sources and Models

2017

Biological networks rely on the storage and retrieval of data associated to the physical interactions and/or functional relationships among different actors. In particular, the attention may be on the interactions among cellular components, such as proteins, genes, RNA, or for example on phenotype–genotype associations. Data from which biological networks are built are usually stored in public databases, and we provide here a brief summary of the main types of both data and associations, publicly available. Moreover, we also explain how it is possible to construct suitable network models from these associations, focusing on protein–protein interaction networks, gene–disease networks and net…