Search results for "Ionization."

showing 10 items of 1229 documents

Ab initio determination of the ionization potentials of DNA and RNA nucleobases

2006

Quantum chemical high level ab initio coupled-cluster and multiconfigurational perturbation methods have been used to compute vertical and adiabatic ionization potentials of the five canonical DNA and RNA nucleobases: uracil, thymine, cytosine, adenine, and guanine. Several states of their cations have been also calculated. The present results represent a systematic compendium of these magnitudes, establishing theoretical reference values at a level not reported before, calibrating computational strategies, and guiding the assignment of the features in the experimental photoelectron spectra. Daniel.Roca@uv.es Mercedes.Rubio@uv.es Manuela.Merchan@uv.es Luis.Serrano@uv.es

DNA ; Macromolecules ; Ionisation potential ; Photoelectron spectra ; Molecular biophysics ; Ab initio calculations ; Coupled cluster calculations ; Perturbation theoryGuanineGuaninePhotochemistryAb initioBiophysicsGeneral Physics and AstronomyIonisation potentialPerturbation theoryNucleobasechemistry.chemical_compoundCytosinePhotoelectron spectraCoupled cluster calculationsAb initio quantum chemistry methodsComputational chemistryIonizationPhysics::Atomic and Molecular ClustersPhysical and Theoretical ChemistryUracil:FÍSICA::Química física [UNESCO]IonsPhysics::Biological PhysicsQuantitative Biology::BiomoleculesBase CompositionChemistry PhysicalAdenineUracilDNAMolecular biophysicsQuantitative Biology::GenomicsThymineUNESCO::FÍSICA::Química físicachemistryMacromoleculesCalibrationQuantum TheoryRNAAb initio calculationsCytosineSoftwareThymine
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Vibrio gallaecicus sp. nov. isolated from cultured clams in north-western Spain.

2009

Abstract A group of three motile facultative anaerobic marine bacteria were isolated from cultured Manila clams (Ruditapes philippinarum) in Galicia, north-western Spain. The strains were characterized phenotypically and genotypically. Phylogenetic analysis of the 16S rRNA gene and four housekeeping genes, RNA polymerase α-chain (rpoA), RecA protein (recA), the α-subunit of bacterial ATP synthase (atpA) and the uridine monophosphate (UMP) kinase (pyrH), indicated that these strains were closely related to the Vibrio splendidus clade. The amplified fragment length polymorphism (AFLP) fingerprints, DNA–DNA hybridizations and phylogenies of the housekeeping and 16S rRNA gene sequences showed t…

DNA BacterialMolecular Sequence DataAquacultureApplied Microbiology and BiotechnologyMicrobiologyDNA RibosomalMicrobiologyBacterial ProteinsSpecies SpecificityPhylogeneticsVibrionaceaeRNA Ribosomal 16SAnimalsEcology Evolution Behavior and SystematicsPhylogenyVibrioPhylogenetic treebiologyNucleic Acid HybridizationGenes rRNASequence Analysis DNARibosomal RNAbiology.organism_classification16S ribosomal RNAVibrioHousekeeping geneBacterial Typing TechniquesBivalviaPhenotypeSpainSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationAmplified fragment length polymorphismPolymorphism Restriction Fragment LengthSystematic and applied microbiology
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Genetic diversity and phenotypic characterization of Iodobacter limnosediminis associated with skin lesions in freshwater fish

2021

The relatively unknown genus Iodobacter sp. has been repeatedly isolated from skin ulcers and saprolegniosis on freshwater fish in Finland, especially farmed salmonids. Genetic characterization verified that all 23 bacterial isolates studied here belonged to the species Iodobacter limnosediminis, previously undescribed from the fish microbiota. Whole-genome pulsed-field gel electrophoresis revealed variability between the I. limnosediminis strains, suggesting that they were most likely of environmental origin. Two I. limnosediminis strains caused lesions in 27%–53% of brown trout (Salmo trutta) injected intramuscularly (p ≤ .05). The lesions represented moderate to severe tissue damage, but…

DNA BacterialbakteeritauditTroutVeterinary (miscellaneous)skin lesionskin lesionsZoologyFresh WaterAquatic ScienceSkin DiseasesLesionFish DiseasesBrown troutmedicineAnimalsmikrobitIodobacter limnosediminisSalmoResearch ArticlesFinlandkalatGel electrophoresisGenetic diversitybiologyBetaproteobacteriaBacterial InfectionsSequence Analysis DNAbiology.organism_classificationPhenotypekudoksetfreshwater fishSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationFreshwater fishmakea vesimedicine.symptomWater MicrobiologySkin lesionResearch ArticleJournal of Fish Diseases
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Nonintrusive monitoring and quantitative analysis of strong laser-field-induced impulsive alignment

2004

We report the observation of impulsive alignment of $\mathrm{C}{\mathrm{O}}_{2}$ molecules produced through their interaction with a nonresonant, strong laser pulse. The periodic alignment is monitored using a polarization technique generally employed in optical Kerr effect experiments; the birefringence produced by alignment of the molecular sample is measured with a weak pulse, time-delayed with respect to the alignment pulse. The technique provides a signal proportional to $⟨{\mathrm{cos}}^{2}\phantom{\rule{0.2em}{0ex}}\ensuremath{\theta}⟩\ensuremath{-}\frac{1}{3}$, where $\ensuremath{\theta}$ is the polar angle between the molecular axis and the strong-field polarization axis. Experimen…

DYNAMICSPhysicsI-2BirefringenceKerr effectWave packetWAVE-PACKETSALIGNING MOLECULESPOLARIZABILITYPolarization (waves)Electromagnetic radiationAtomic and Molecular Physics and OpticsPULSESSchrödinger equationMOLECULAR ALIGNMENTMOLECULESsymbols.namesakeREVIVAL STRUCTURESPolarizabilityIonizationQuantum mechanicssymbolsAtomic physicsPhysical Review A
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Background discrimination capabilities of a heat and ionization germanium cryogenic detector

2001

The discrimination capabilities of a 70 g heat and ionization Ge bolometer are studied. This first prototype has been used by the EDELWEISS Dark Matter experiment, installed in the Laboratoire Souterrain de Modane, for direct detection of WIMPs. Gamma and neutron calibrations demonstrate that this type of detector is able to reject more than 99.6% of the background while retaining 95% of the signal, provided that the background events distribution is not biased towards the surface of the Ge crystal. However, the 1.17 kg.day of data taken in a relatively important radioactive environment show an extra population slightly overlapping the signal. This background is likely due to interactions o…

Dark matterPopulationFOS: Physical sciencesAstrophysicsEDELWEISSAstrophysics01 natural scienceslaw.inventionNuclear physics[PHYS.ASTR.CO]Physics [physics]/Astrophysics [astro-ph]/Cosmology and Extra-Galactic Astrophysics [astro-ph.CO]RecoillawIonization0103 physical sciencesNeutron010306 general physicseducationPhysicseducation.field_of_study[SDU.ASTR]Sciences of the Universe [physics]/Astrophysics [astro-ph]010308 nuclear & particles physicsBolometerDetectorAstrophysics (astro-ph)Astronomy and AstrophysicsDark matter ; WIMP ; cryogenic detector
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Recent advances on ionic liquid uses in separation techniques

2018

International audience; The molten organic salts with melting point below 100°C, commonly called ionic liquids (ILs) have found numerous uses in separation sciences due to their exceptional properties as non molecular solvents, namely, a negligible vapor pressure, a high thermal stability, and unique solvating properties due to polarity and their ionic character of molten salts. Other properties, such as viscosity, boiling point, water solubility, and electrochemical window, are adjustable playing with which anion is associated with which cation. This review focuses on recent development of the uses of ILs in separation techniques actualizing our 2008 article (same authors, J. Chromatogr. A…

Deep eutectic solventSpectrometry Mass Electrospray IonizationChromatography Gasgas chromatographydeep eutectic solventLiquid chromatographyIonic bonding02 engineering and technologyTrace anion detection01 natural sciencesBiochemistryAnalytical Chemistryionic liquidschemistry.chemical_compoundCountercurrent chromatographyCapillary electrophoresistrace anion detection[CHIM.ANAL]Chemical Sciences/Analytical chemistryliquid chromatographyCountercurrent DistributionGas chromatographyChromatographyViscosity010401 analytical chemistryOrganic ChemistryElectrophoresis CapillaryGeneral Medicine021001 nanoscience & nanotechnologyIonic liquids0104 chemical sciencesDeep eutectic solventBoiling pointchemistryIonic liquidSolventsMelting pointGases0210 nano-technologyChromatography LiquidElectrochemical windowJournal of Chromatography A
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Dynamic chemical devices: photoinduced electron transfer and its ion-triggered switching in nanomechanical butterfly-type bis(porphyrin)terpyridines.

2005

A series of butterfly-type molecular constructs has been prepared in good yield by using a double Stille coupling synthetic protocol. They are composed of a terpyridine (terpy) scaffold and two wings composed of appended porphyrins that are capable of switching from an extended W geometry to a compact U geometry upon cation coordination of the terpy unit. The porphyrin moieties exist in the constructs either as free bases or they can be sequentially metallated, thus giving rise to wings of different "colours". Stationary and time-resolved emission studies of the HZn, ZnAu and Zn2Au constructs show that the electronic properties are strongly dependent on the geometry. In the extended W confo…

DenticityMagnetic Resonance SpectroscopyPorphyrinsChemical PhenomenaPhotochemistryPyridinesMolecular ConformationElectronsPhotochemistryCrystallography X-RayLigandsCatalysisPhotoinduced electron transferchemistry.chemical_compoundElectron transferLigandHydrogen bondChemistry PhysicalOrganic ChemistryTemperatureGeneral ChemistryHydrogen-Ion ConcentrationPorphyrinZincSpectrometry FluorescencechemistryExcited stateSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationIndicators and ReagentsSpectrophotometry UltravioletTerpyridineChemistry (Weinheim an der Bergstrasse, Germany)
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Critical assessment of ionization patterns and applications of ambient desorption/ionization mass spectrometry using FAPA-MS

2016

Ambient desorption/ionization mass spectrometry (MS) has gained growing interest during the last decade due to its high analytical performance and yet simplicity. Here, one of the recently developed ambient desorption/ionization MS sources, the flowing atmospheric-pressure afterglow (FAPA) source, was investigated in detail regarding background ions and typical ionization patterns in the positive as well as the negative ion mode for a variety of compound classes, comprising alkanes, alcohols, aldehydes, ketones, carboxylic acids, organic peroxides and alkaloids. A broad range of signals for adducts and losses was found, besides the usually emphasized detection of quasimolecular ions, i.e. […

Desorption electrospray ionizationChemical ionizationChemistry010401 analytical chemistryAnalytical chemistryAtmospheric-pressure chemical ionization010402 general chemistryMass spectrometry01 natural sciencesIon source0104 chemical sciencesAtmospheric-pressure laser ionizationDirect electron ionization liquid chromatography–mass spectrometry interfaceSpectroscopyAmbient ionizationJournal of Mass Spectrometry
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A new interface to couple thin-layer chromatography with laser desorption/atmospheric pressure chemical ionization mass spectrometry for plate scanni…

2005

An interface to allow on-line qualitative and quantitative full-plate detection and analysis of compounds separated by thin-layer chromatography (TLC) is presented. A continuous wave diode laser is employed as a desorption source. Atmospheric pressure chemical ionization mass spectrometry ionizes and subsequently identifies the desorbed sample molecules. Besides direct laser desorption on untreated TLC plates, graphite particles were used as a matrix to couple in the laser power and improve the efficiency of desorption.

Desorption electrospray ionizationChromatographyMatrix-assisted laser desorption electrospray ionizationChemistryOrganic ChemistryAnalytical chemistryEquipment DesignMass spectrometryIon sourceSoft laser desorptionAnalytical ChemistryAtmospheric-pressure laser ionizationSpecimen HandlingEquipment Failure AnalysisSystems IntegrationAtmospheric PressureSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationDirect electron ionization liquid chromatography–mass spectrometry interfaceSpectroscopyAmbient ionizationRapid communications in mass spectrometry : RCM
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Measurement of nanoparticle mass distributions by laser desorption/ionization time-of-flight mass spectrometry.

2011

In this paper, access to the mass distribution analysis of nanoparticles is described based on laser desorption/ionization and time of flight mass spectrometry. Two examples are given, demonstrating the accurate mass distribution analysis of nanoparticles fabricated both ex situ and in situ during the laser-assisted desorption process. The potentials and the limitations of the method are discussed, with special emphasis on carbonaceous clusters and molecules.

Desorption electrospray ionizationStatic secondary-ion mass spectrometryMatrix-assisted laser desorption electrospray ionizationChemistryAnalytical chemistryGeneral Materials ScienceTime-of-flight mass spectrometryCondensed Matter PhysicsMass spectrometrySoft laser desorptionIon sourceAmbient ionizationJournal of physics. Condensed matter : an Institute of Physics journal
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