Search results for "Isomerization"

On the mechanism of catalytic isomerization of xylenes. Molecular orbital studies

1979

Abstract On the basis of CNDO/2 molecular orbital calculations, we postulate the following detailed mechanism for the catalytic isomerization of xylenes which explains the initial product distributions and also our previous finding that the reaction is intramolecular: (i) adsorption of xylene on a surface acid site to form a Wheland-type complex; (ii) disrotatory cyclization of the protonated species into a bicyclo[3, 1, 0]hexenyl complex; (iii) migration of the methylene bridge to a new side of the pentagonal ring; (iv) change of the new bicyclic species back into the corresponding Wheland-type complex; (v) desorption of the xylene isomer from the surface of the catalyst. The overall rate …

Tracking Changes in Protonation and Conformation during Photoactivation of a Phytochrome Protein

2016

Phytochromes are photosensor proteins in plants and bacteria. The biological response is mediated by structural changes that follow photon absorption in the protein complex. The initial step is the photoisomerization of the biliverdin chromophore. How this leads to large-scale structural changes of the whole complex is, however, poorly understood. In this work, we use molecular dynamics (MD) simulations to investigate the structural changes after isomerization. In particular, we perform MD simulations at constant pH, using a recently developed method, to explore the effect of chromophore isomerization on the protonation (pKa) of nearby residues. In addition, we use a hybrid quantum mechanic…

A photoswitchable helical peptide with light-controllable interface/transmembrane topology in lipidic membranes

2021

Summary The spontaneous insertion of helical transmembrane (TM) polypeptides into lipid bilayers is driven by three sequential equilibria: solution-to-membrane interface (MI) partition, unstructured-to-helical folding, and MI-to-TM helix insertion. A bottleneck for understanding these three steps is the lack of experimental approaches to perturb membrane-bound hydrophobic polypeptides out of equilibrium rapidly and reversibly. Here, we report on a 24-residues-long hydrophobic α-helical polypeptide, covalently coupled to an azobenzene photoswitch (KCALP-azo), which displays a light-controllable TM/MI equilibrium in hydrated lipid bilayers. FTIR spectroscopy reveals that trans KCALP-azo folds…

Novel bile acid conjugates with aryl/alkenyl linker: Synthesis and characterization

2008

Abstract Eight potential precursors for the design of bile acid derived receptors viz. 2,6-bis[dimethyl(3α-hydroxy-5β-cholan-24-amidoethyl)ammonio-methyl]naphthalene dibromide (1), 3,3′-bis[dimethyl(3α-hydroxy-5β-cholan-24-amidoethyl)ammoniomethyl]biphenyl dibromide (2), 3,3′-bis[dimethyl(3α,7α,12α-trihydroxy-5β-cholan-24-amidoethyl)ammoniomethyl]biphenyl dibromide (3), 4,4′-bis[dimethyl(3α-hydroxy-5β-cholan-24-amidoethyl)ammoniomethyl]stilbene dibromide (4), 4,4′-bis[dimethyl(3α,7α,12α-trihydroxy-5β-cholan-24-amidoethyl)ammoniomethyl]stilbene dibromide (5), allyl-dimethyl(3α,7α,12α-trihydroxy-5β-cholan-24-amidoethyl)ammonium bromide (6), 1,4′-bis[dimethyl(3α-hydroxy-5β-cholan-24-amidoethyl…

Incorporation and metabolism of dietary trans isomers of linolenic acid alter the fatty acid profile of rat tissues

2000

To study the influence on lipid metabolism and platelet aggregation of the fatty acid isomerization that occurs during heat treatment, weanling rats were fed for 8 wk a diet enriched with 5% isomerized (experimental group) or normal (control group) canola oil. Geometrical isomers of alpha-linolenic acid representing 0.2 g/100 g of the experimental diet were incorporated into liver, platelets, aorta and heart, at the expense of their cis homologue and of 18:2(n-6). The major isomer, 9c,12c,15t-18:3, was also metabolized to 5c,8c,11c,14c,17t-20:5 and to an unknown compound, found in liver, platelets and aorta, which has been identified tentatively as 7c, 10c,13c,16c,19t-22:5. The greater 20:4…

Tuning Azoheteroarene Photoswitch Performance through Heteroaryl Design

2017

International audience; Photoswitchable compounds, which can be reversibly switched between two isomers by light, continue to attract significant attention for a wide array of applications. Azoheteroarenes represent a relatively new but understudied type of photoswitch, where one of the aryl rings from the conventional azobenzene class has been replaced with a five-membered heteroaromatic ring. Initial studies have suggested the azoheteroarenes – the arylazopyrazoles in particular – to have excellent photoswitching properties (quantitative switching and long Z isomer half-life). Here we present a systematic computational and experimental study to elucidate the origin of the long thermal hal…

Molecular orbital studies on the mechanism of catalytic isomerization of xylenes II. The photochemical process

1981

Abstract The feasibility of an intermediate step in the mechanism of photochemical isomerization of xylenes in acidic media is explored by using CNDO molecular orbital methods. Along the reaction path from 2,6-dimethylbenzenium ion to dimethylbicyclo[3.1.0]hexenyl cation, the energy surfaces for this intermediate step have been drawn both for the first singlet S1 and triplet T1 excited states. The energies of these excited states have been calculated by adding to the ground-state energy calculated by CNDO/2 method the excitation energy calculated by CNDO/S-CI method. An optimization of the saddle point energy is achieved by introducing the angle between methyl groups and the ring plane as a…

On the Photoisomerization of Caffeic Acid in the Presence of Nanostructured TiO2

2014

A kinetic study of the cracking, isomerization, and disproportionation of n-heptane on a chromium-exchanged Y zeolite

1982

The kinetic rate constants for the cracking, isomerization, and disproportionation of n-heptane over a CrHNaY (32% chromium exchanged) zeolite catalyst at 400, 450, and 470 °C have been calculated. The interaction of n-heptane with a model Lewis acid such as BF3 and progress along the reaction coordinate have been studied by means of molecular orbital calculations. From the kinetic results, i.e., activation energies and frequency factors, and the theoretical calculations, it can be concluded that the controlling step in these reactions is not the formation of the carbonium ion, but the subsequent transformation of this carbonium ion. In addition, the theoretical calculations show that the a…

1,6-π-Electrocyclization of 3-Vinyl-FunctionalizedN,N-Dimethyl-2,2′-Bisindolyl: Some analysis of the educt transformation process

1998

The thermally and photochemically induced 1,6-π-electrocyclization reaction of 3-vinyl-functionalized N, N'-dimethyl-2,2′-bisindolyls 4 has been analysed and some reactivity aspects are presented. On the basis of time dependent 1H nmr and uv spectroscopic measurements the educt transformations can be observed in detail. Some results of the isomerization process of the educts are also given.