Search results for "Layers"

showing 10 items of 335 documents

Single Particle Plasmon Sensors as Label-Free Technique To Monitor MinDE Protein Wave Propagation on Membranes.

2016

We use individual gold nanorods as pointlike detectors for the intrinsic dynamics of an oscillating biological system. We chose the pattern forming MinDE protein system from Escherichia coli (E. coli), a prominent example for self-organized chemical oscillations of membrane-associated proteins that are involved in the bacterial cell division process. Similar to surface plasmon resonance (SPR), the gold nanorods report changes in their protein surface coverage without the need for fluorescence labeling, a technique we refer to as NanoSPR. Comparing the dynamics for fluorescence labeled and unlabeled proteins, we find a reduction of the oscillation period by about 20%. The absence of photoble…

0301 basic medicineLipid BilayersAnalytical chemistryBioengineeringCell Cycle Proteins02 engineering and technologyBiosensing Techniques03 medical and health sciencesMin SystemEscherichia coliGeneral Materials ScienceSurface plasmon resonancePlasmonFluorescent DyesAdenosine TriphosphatasesNanotubesOscillationChemistryMechanical EngineeringEscherichia coli ProteinsGeneral ChemistrySurface Plasmon Resonance021001 nanoscience & nanotechnologyCondensed Matter PhysicsFluorescencePhotobleaching030104 developmental biologyBiophysicsNanorodGold0210 nano-technologyBiosensorNano letters
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Polysialic acid chains exhibit enhanced affinity for ordered regions of membranes.

2018

Polysialic acid (polySia) forms linear chains which are usually attached to the external surface of the plasma membrane mainly through the Neural Cell Adhesion Molecule (NCAM) protein. It is exposed on neural cells, several types of cancer cells, dendritic cells, and egg and sperm cells. There are several lipid raft-related phenomena in which polySia is involved; however the mechanisms of polySia action as well as determinants of its localization in lipid raft microdomains are still unknown, although the majority of NCAM molecules in the liquid-ordered raft membrane fractions of neural cells appear to be polysialylated. Here we investigate the affinity of polySia (both soluble and NCAM-depe…

0301 basic medicineLipid BilayersBiophysicsPolysialic acidBiochemistryGiant vesicles03 medical and health sciencesNeuroblastomaRafts0302 clinical medicineMembrane MicrodomainsCell Line TumorNeuroblastoma cellsFluorescence Resonance Energy TransferHumansLipid raftNeuronsLiposomePolysialic acidChemistryCell MembraneCell BiologyRaftLipidsKinetics030104 developmental biologyMembraneFörster resonance energy transferMicroscopy FluorescenceSolubilityCancer cellLiposomesFRETBiophysicsSialic AcidsNeural cell adhesion molecule030217 neurology & neurosurgeryProtein BindingBiochimica et biophysica acta. Biomembranes
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Energy transduction and signal averaging of fluctuating electric fields by a single protein ion channel

2016

[EN] We demonstrate the electrical rectification and signal averaging of fluctuating signals using a biological nanostructure in aqueous solution: a single protein ion channel inserted in the lipid bilayer characteristic of cell membranes. The conversion of oscillating, zero time-average potentials into directional currents permits charging of a load capacitor to significant steady-state voltages within a few minutes in the case of the outer membrane porin F (OmpF) protein, a bacterial channel of Escherichia coli. The experiments and simulations show signal averaging effects at a more fundamental level than the traditional cell and tissue scales, which are characterized by ensembles of many…

0301 basic medicineLipid BilayersPorinsGeneral Physics and AstronomyNanotechnology02 engineering and technologyMolecular physicsIon Channelslaw.invention03 medical and health scienceslawElectric fieldEscherichia coliPhysical and Theoretical ChemistryLipid bilayerIon channelbiologyChemistryCell MembraneElectric Conductivity021001 nanoscience & nanotechnologybiology.organism_classificationCapacitor030104 developmental biologyMembraneFISICA APLICADASignal averagingNanodiodes0210 nano-technologyBacterial Outer Membrane ProteinsVoltagePhysical Chemistry Chemical Physics
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Incorporation of mRNA in Lamellar Lipid Matrices for Parenteral Administration

2018

Molecular pharmaceutics 15(2), 642 - 651 (2018). doi:10.1021/acs.molpharmaceut.7b01022

0301 basic medicineModels MolecularDrug CompoundingKineticsLipid BilayersPharmaceutical Science610TransfectionCell LineMyoblasts03 medical and health sciencesMiceX-Ray DiffractionCationsDrug DiscoveryScattering Small AngleAnimalsRNA Messengerddc:610Lipid bilayerLuciferasesMessenger RNALiposomeDrug CarriersChemistryAqueous two-phase systemRNATransfection030104 developmental biologyDelayed-Action PreparationsLiposomesBiophysicsMolecular Medicinelipids (amino acids peptides and proteins)Drug carrier
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Physical mechanisms of micro- and nanodomain formation in multicomponent lipid membranes.

2016

This article summarizes a variety of physical mechanisms proposed in the literature, which can generate micro- and nanodomains in multicomponent lipid bilayers and biomembranes. It mainly focusses on lipid-driven mechanisms that do not involve direct protein-protein interactions. Specifically, it considers (i) equilibrium mechanisms based on lipid-lipid phase separation such as critical cluster formation close to critical points, and multiple domain formation in curved geometries, (ii) equilibrium mechanisms that stabilize two-dimensional microemulsions, such as the effect of linactants and the effect of curvature-composition coupling in bilayers and monolayers, and (iii) non-equilibrium me…

0301 basic medicinePhase transitionCytoplasmCritical phenomenaLipid BilayersBiophysicsFOS: Physical sciencesCondensed Matter - Soft Condensed MatterMolecular Dynamics SimulationBiochemistryPhase TransitionQuantitative Biology::Subcellular Processes03 medical and health sciencesSurface-Active AgentsMembrane MicrodomainsMonolayerCluster (physics)AnimalsHumansMicroemulsionPhysics - Biological PhysicsLipid bilayerPhysics::Biological PhysicsBacteriaChemistryBiological membraneCell BiologyCrystallographyActin CytoskeletonKinetics030104 developmental biologyMembraneBiological Physics (physics.bio-ph)Chemical physicsSoft Condensed Matter (cond-mat.soft)ThermodynamicsEmulsionsSignal TransductionBiochimica et biophysica acta. Biomembranes
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Intramolecular structural parameters are key modulators of the gel-liquid transition in coarse grained simulations of DPPC and DOPC lipid bilayers

2018

The capability of coarse-grained models based on the MARTINI mapping to reproduce the gel-liquid phase transition in saturated and unsaturated model lipids was investigated. We found that the model is able to reproduce a lower critical temperature for 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) with respect to 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC). Nonetheless, the appearance of a gel phase for DOPC is strictly dependent on the intramolecular parameters chosen to model its molecular structure. In particular, we show that the bending angle at the coarse-grained bead corresponding to the unsaturated carbon-carbon bond acts as an order parameter determining the temperature of …

0301 basic medicinePhase transitionMolecular dynamic12-DipalmitoylphosphatidylcholineLipid BilayersMolecular ConformationBiophysicsBendingMolecular Dynamics SimulationMolecular dynamics01 natural sciencesBiochemistry03 medical and health sciencesMolecular dynamicsPhase (matter)BiomembranesBiomembrane0103 physical sciencesMoleculeLipid bilayerMolecular BiologyMulti-scalePhase transitionMARTINI010304 chemical physicsChemistryTransition temperatureTemperatureCell BiologyCrystallography030104 developmental biologyChemical physicsIntramolecular forcePhosphatidylcholinesBiomembranes; MARTINI; Molecular dynamics; Multi-scale; Phase transition; Biophysics; Biochemistry; Molecular Biology; Cell Biology
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Fractional hereditariness of lipid membranes: Instabilities and linearized evolution

2016

In this work lipid ordering phase changes arising in planar membrane bilayers is investigated both accounting for elas- ticity alone and for effective viscoelastic response of such assemblies. The mechanical response of such membranes is studied by minimizing the Gibbs free energy which penalizes perturbations of the changes of areal stretch and their gradients only [1]. As material instabilities arise whenever areal stretches characterizing homogeneous configurations lie inside the spinoidal zone of the free energy density, bifurcations from such configurations are shown to occur as oscillatory perturbations of the in-plane displacement. Experimental observations [2] show a power-law in-pl…

0301 basic medicineViscoelastic lipid membranePhase transitionMembrane Fluidity0206 medical engineeringLipid BilayersBiomedical EngineeringSeparation of variablesFOS: Physical sciences02 engineering and technologyviscoelastic lipid membranesCondensed Matter - Soft Condensed Matterfractional hereditary lipid membranesViscoelasticityFractional hereditary lipid membraneMaterial instabilitieBiomaterials03 medical and health sciencessymbols.namesakeFractional hereditary lipid membranes; Material instabilities; Phase transitions; Viscoelastic lipid membranes; Biomaterials; Biomedical Engineering; Mechanics of MaterialsVariational principleElasticity (economics)Phase transitionMembranesChemistryOscillationTime evolutionBiomaterial020601 biomedical engineeringElasticityGibbs free energyphase transitions030104 developmental biologyClassical mechanicsModels ChemicalMechanics of MaterialssymbolsSoft Condensed Matter (cond-mat.soft)material instabilitiesSettore ICAR/08 - Scienza Delle Costruzionifractional hereditary lipid membranes viscoelastic lipid membranes phase transitions material instabilities
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Interaction of C 60 fullerenes with asymmetric and curved lipid membranes: a molecular dynamics study

2015

Interaction of fullerenes with asymmetric and curved DOPC/DOPS bicelles is studied by means of coarse-grained molecular dynamics simulations. The effects caused by asymmetric lipid composition of the membrane leaflets and the curvature of the membrane are analyzed. It is shown that the aggregates of fullerenes prefer to penetrate into the membrane in the regions of the moderately positive mean curvature. Upon penetration into the hydrophobic core of the membrane fullerenes avoid the regions of the extreme positive or the negative curvature. Fullerenes increase the ordering of lipid tails, which are in direct contact with them, but do not influence other lipids significantly. Our data sugges…

0301 basic medicine[ SDV.BBM.BP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/BiophysicsFullereneLipid BilayersGeneral Physics and AstronomyPhosphatidylserinesModel lipid bilayerMolecular Dynamics SimulationCurvatureQuantitative Biology::Cell BehaviorQuantitative Biology::Subcellular Processes03 medical and health sciencesMolecular dynamicsPhysics::Atomic and Molecular ClustersOrganic chemistryPhysical and Theoretical ChemistryComputingMilieux_MISCELLANEOUSPhysics::Biological PhysicsMean curvatureChemistryPenetration (firestop)[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Biophysics030104 developmental biologyMembraneMembrane curvatureBiophysicsPhosphatidylcholineslipids (amino acids peptides and proteins)Fullerenes
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2018

Background Attempts to establish a biomarker reflecting individual player load in intermittent sports such as football have failed so far. Increases in circulating DNA (cfDNA) have been demonstrated in various endurance sports settings. While it has been proposed that cfDNA could be a suitable marker for player load in intermittent sports, the effects on cfDNA of repeated sprinting as an essential feature in intermittent sports are unknown. For the first time, we assessed both alterations of cfDNA due to repeated maximal sprints and due to a professional football game. Methods Nine participants were subjected to a standardised sprint training session with cross-over design of five maximal s…

0301 basic medicinemedicine.medical_specialtyFootball playersMultidisciplinarybusiness.industry030229 sport sciencesCirculating Cell-Free DNAIncremental exerciseSprint training03 medical and health sciences030104 developmental biology0302 clinical medicineSprintInternal medicinemedicineCardiologyCirculating DNATracking databusinesshuman activitiesPLOS ONE
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Stability of Asymmetric Lipid Bilayers Assessed by Molecular Dynamics Simulations

2009

The asymmetric insertion of amphiphiles into biological membranes compromises the balance between the inner and outer monolayers. As a result, area expansion of the receiving leaflet and curvature strain may lead to membrane permeation, shape changes, or membrane fusion events. We have conducted both atomistic and coarse-grained molecular dynamics simulations of dipalmitoyl-phosphatidylcholine (DPPC) bilayers to study the effect of an asymmetric distribution of lipids between the two monolayers on membrane stability. Highly asymmetric lipid bilayers were found to be surprisingly stable within the submicrosecond time span of the simulations. Even the limiting case of a monolayer immersed in …

12-DipalmitoylphosphatidylcholineLipid BilayersBiochemistryCatalysisColloid and Surface ChemistryCOARSE-GRAINED MODELSHAPE TRANSFORMATIONSMonolayerComputer SimulationLipid bilayer phase behaviorLipid bilayerChemistryBilayerLipid bilayer fusionBiological membraneGeneral ChemistryLipid bilayer mechanicsANTIMICROBIAL PEPTIDESCrystallographyMembraneTRANSMEMBRANE DISTRIBUTIONEGG PHOSPHATIDYLCHOLINEPhosphatidylcholinesPORE FORMATIONBiophysicsPRESSURE PROFILESMECHANOSENSITIVE CHANNELlipids (amino acids peptides and proteins)OCTYL GLUCOSIDEPHOSPHOLIPID-BILAYERSJournal of the American Chemical Society
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