Search results for "Lichen"

2020

Abstract Lichens are valuable models in symbiosis research and promising sources of biosynthetic genes for biotechnological applications. Most lichenized fungi grow slowly, resist aposymbiotic cultivation, and are poor candidates for experimentation. Obtaining contiguous, high-quality genomes for such symbiotic communities is technically challenging. Here, we present the first assembly of a lichen holo-genome from metagenomic whole-genome shotgun data comprising both PacBio long reads and Illumina short reads. The nuclear genomes of the two primary components of the lichen symbiosis—the fungus Umbilicaria pustulata (33 Mb) and the green alga Trebouxia sp. (53 Mb)—were assembled at contiguit…

Thallus Growth Stage and Geographic Origin Shape Microalgal Diversity in Ramalina farinacea Lichen Holobionts

2021

Lichen symbioses are microecosystems hosting many other living organisms besides the two major lichen symbionts (i.e., lichenized fungi [the mycobiont] and green microalgae or cyanobacteria [the photobiont]). Recent investigations evidenced that other fungi, non-photosynthetic bacteria, and microalgae co-inhabit within the lichen thalli, but their diversity and their roles are still underinvestigated. Here we present an ad hoc stratified sampling design and in-depth Illumina paired-end metabarcoding approach to explore microalgal diversity in lichen thalli of the model species Ramalina farinacea from different ecologies. Lichen thalli were surveyed according to three different sizes, and di…

Cryptogams signify key transition of bacteria and fungi in Arctic sand dune succession

2019

SummaryPrimary succession models focus on aboveground vascular plants. However, the prevalence of mosses and lichens, i.e. cryptogams, suggests they play a role in soil successions. Here, we explore whether effects of cryptogams on belowground microbes can facilitate progressive shifts in sand dune succession.We linked aboveground vegetation, belowground bacterial and fungal community, and soil chemistry in six successional stages in Arctic inland sand dunes: bare sand, grass, moss, lichen, ericoid heath and mountain birch forest.Compared to the bare sand and grass stages, microbial biomass and the proportion of fungi increased in the moss stage, and later stage microbial groups appeared de…

Scale- and taxon-dependent patterns of plant diversity in steppes of Khakassia, South Siberia (Russia)

2016

The drivers of plant richness at fine spatial scales in steppe ecosystems are still not sufficiently understood. Our main research questions were: (i) How rich in plant species are the natural steppes of Southern Siberia compared to natural and semi-natural grasslands in other regions of the Palaearctic? (ii) What are the main environmental drivers of the diversity patterns in these steppes? (iii) What are the diversity-environment relationships and do they vary between spatial scales and among different taxonomic groups? We sampled the steppe vegetation (vascular plants, bryophytes and lichens) in Khakassia (Russia) with 39 nested-plot series (0.0001-100-m(2) plot size) and 54 additional 1…

Comparative analysis of abundance–occupancy relationships for species at risk at both broad taxonomic and spatial scales

2015

The abundance–occupancy relationship is one of the most well-examined relationships in ecology. At the species level, a positive association has been widely documented. However, until recently, research on the nature of this relationship at broad taxonomic and spatial scales has been limited. Here, we perform a comparative analysis of 12 taxonomic groups across a large spatial scale (Canada), using data on Canadian species at risk: amphibians, arthropods, birds, freshwater fishes, lichens, marine fishes, marine mammals, molluscs, mosses, reptiles, terrestrial mammals, and vascular plants. We find a significantly positive relationship in all taxonomic groups with the exception of freshwater…

Opinions 100, 101 and 102

2020

The International Committee on Systematics of Prokaryotes has formally made final decisions, taking into account the conclusions of the Judicial Commission, on three pending Requests for an Opinion, thereby allowing the corresponding Opinions to be issued. According to Opinion 100, the request for the recognition of strain A1-86 (=DSM 17629=NCIMB 14373) as the neotype strain of Eubacterium rectale (Hauduroy et al. 1937) Prévot 1938 (Approved Lists 1980) is denied, ruling that a neotype does not need to be designated for E. rectale because strain VPI 0990 (=ATCC 33656=CIP 105953) is considered to be a duplicate isolate of the same strain as VPI 0989 (=ATCC 25578) and may serve as its nomencl…

Lichen communities on Populus   tremula are affected by the density of Picea   abies

2021

Questions Aspen (Populus tremula) is declining in the old‐growth forests of boreal Fennoscandia. This threatens the numerous taxa that are dependent on old aspens, including many epiphytic lichens. Potential methods to aid epiphytic lichens on aspen are centered around treatments which affect the density of Norway spruce (Picea abies). In this study, we investigated how epiphytic lichen communities on aspen are affected by the variation of spruce density in the immediate vicinity of the focal aspen. Location Southern boreal forests in Finland. Methods We recorded the occurrence of lichens from 120 aspens in 12 semi‐natural forest sites. We used spruce basal area as the measure for spruce de…

Effects of local forest continuity on the diversity of fungi on standing dead pines

2018

Human-induced fragmentation affects forest continuity, i.e. availability of a suitable habitat for the target species over a time period. The dependence of wood-inhabiting fungi on landscape level continuity has been well demonstrated, but the importance of local continuity has remained controversial. In this study, we explored the effects of local forest continuity (microhabitat and stand level) on the diversity of wood-inhabiting fungi on standing dead trunks of Scots pine (Pinus sylvestris L.). We studied species richness and community composition of decomposers and Micarea lichens on 70 trunks in 14 forests in central Finland that differed in their state of continuity. We used dendrochr…

Symbiosis between river and dry lands: phycobiont dynamics on river gravel bars

2020

AbstractRiver gravel bars are dynamic and heterogeneous habitats standing on transition between aquatic and terrestrial environment. Periodical flooding, low nutrient content, frost, missing safe sites, drought, and heat on the ground surface significantly influence life in these habitats. Mutualistic symbiosis may be a successful strategy for organisms to survive and to proliferate under harsh conditions. The lichen genus Stereocaulon was selected as a model symbiotic system among the organisms living on river gravel bars. The aim of our work was to determine effect of this dynamic environment on a phycobiont (i.e., green eukaryotic photobiont) community structure. We analysed 147 Stereoca…

The application protocol impacts the effectiveness of biocides against lichens

2020

Abstract This work analyzed the influence of different application protocols on the efficacy of two biocides against the foliose lichen Xanthoparmelia tinctina on the sandstones of the Roman Archaeological site of Luni (Italy). The hypotheses that (a) biocide application tools (brush vs. poultice), (b) pre-treatment hydration, and (c) post-treatment washing may affect devitalization success were verified by monitoring chlorophyll a fluorescence of thalli, both in situ and in laboratory conditions. The hypothesis that (d) stone substrate may act as reservoir for later biocide release under repeated cycles of wetting and drying was also assayed. Analyses confirmed the importance of the applic…